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Spg020564 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg020564
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold9:14864566..14866055
RNA-Seq ExpressionSpg020564
SyntenySpg020564
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041121.1 hypothetical protein E6C27_scaffold128G00290 [Cucumis melo var. makuwa]5.6e-1364.38Show/hide
Query:  ISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSRSSTWVELYIESVYI
        ISIDYMTEILS RLYGTVCT                  VEIELPVPD LPTSAESS S SSTW+ELY ESV++
Subjt:  ISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSRSSTWVELYIESVYI

KAA0062407.1 uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa]7.3e-1378.43Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSRSSTWVELYIESVYI
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS S  +TW+ELY ESV++
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSRSSTWVELYIESVYI

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]2.8e-1264.71Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSRSSTWVELYIESVYI
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S SSTW+ELY+E V++
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSRSSTWVELYIESVYI

TYK08952.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]8.0e-1261.64Show/hide
Query:  ISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSRSSTWVELYIESVYI
        +SIDYMTEILS RL GTVCTQ                 VEIELPVPDTLPTSAE   S SSTW+ELY+ESV++
Subjt:  ISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSRSSTWVELYIESVYI

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]2.8e-1264.71Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSRSSTWVELYIESVYI
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S SSTW+ELY+E V++
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSRSSTWVELYIESVYI

TrEMBL top hitse value%identityAlignment
A0A5A7THH5 Uncharacterized protein2.7e-1364.38Show/hide
Query:  ISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSRSSTWVELYIESVYI
        ISIDYMTEILS RLYGTVCT                  VEIELPVPD LPTSAESS S SSTW+ELY ESV++
Subjt:  ISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSRSSTWVELYIESVYI

A0A5A7V638 Uncharacterized protein3.5e-1378.43Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSRSSTWVELYIESVYI
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS S  +TW+ELY ESV++
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSRSSTWVELYIESVYI

A0A5A7VMG9 Reverse transcriptase1.3e-1264.71Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSRSSTWVELYIESVYI
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S SSTW+ELY+E V++
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSRSSTWVELYIESVYI

A0A5D3CCC7 DNA/RNA polymerases superfamily protein3.9e-1261.64Show/hide
Query:  ISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSRSSTWVELYIESVYI
        +SIDYMTEILS RL GTVCTQ                 VEIELPVPDTLPTSAE   S SSTW+ELY+ESV++
Subjt:  ISIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSRSSTWVELYIESVYI

A0A5D3DX39 Reverse transcriptase1.3e-1264.71Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSRSSTWVELYIESVYI
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S SSTW+ELY+E V++
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSRSSTWVELYIESVYI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTTTAGAATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGGTTTTTCGAGCATTCTGGGGTGTAAAAGTTGAATCCGAAGC
TCTATTTGATAACGATAAGCAGGCATGTTCTAATGTTTTCATGGGATTTTCTGAGATTTCTATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGT
GCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGATCCAGTACGTGGGTGGAGTTGTATATTGAGTCCGTCTAT
ATTGTAAATGTTTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTTTTAGAATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGGTTTTTCGAGCATTCTGGGGTGTAAAAGTTGAATCCGAAGC
TCTATTTGATAACGATAAGCAGGCATGTTCTAATGTTTTCATGGGATTTTCTGAGATTTCTATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGT
GCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGATCCAGTACGTGGGTGGAGTTGTATATTGAGTCCGTCTAT
ATTGTAAATGTTTTGTAA
Protein sequenceShow/hide protein sequence
MVFRMENRAQDFRAKQEDLWFSLVFRAFWGVKVESEALFDNDKQACSNVFMGFSEISIDYMTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSRSSTWVELYIESVY
IVNVL