; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg020580 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg020580
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionNBS-LRR type resistance protein
Genome locationscaffold9:15355155..15358593
RNA-Seq ExpressionSpg020580
SyntenySpg020580
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]5.0e-1446.09Show/hide
Query:  LCSEDFWTNPLGSSFHFFG----------------PRGNRSSLQTKELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVSTGRAPLRQRRWEFTVLNLVT
        LCS  FW N L  SF F                  PRGNR SLQT+E+ KT             PL TLSVL DNDAVVS G+APLRQRRWE        
Subjt:  LCSEDFWTNPLGSSFHFFG----------------PRGNRSSLQTKELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVSTGRAPLRQRRWEFTVLNLVT

Query:  HWASYLTLSKNFPILQVEIELPVPDKLP
              +  K F    VEIELPVPD LP
Subjt:  HWASYLTLSKNFPILQVEIELPVPDKLP

KAA0037923.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]6.0e-0764Show/hide
Query:  HFFGPRGNRSSLQTKELAK---TPEAIWYRVHTGYIPLLTLSVLRDNDAV
        H F  R  + S QTK+LA+    PEAIWYRVH G+IPLLTLSVLR+ND V
Subjt:  HFFGPRGNRSSLQTKELAK---TPEAIWYRVHTGYIPLLTLSVLRDNDAV

KAA0045180.1 uncharacterized protein E6C27_scaffold30G001810 [Cucumis melo var. makuwa]3.2e-0850.54Show/hide
Query:  PRGNRSSLQTKELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVSTGRAPLRQRRWEFTVLNLVTHWASYLTLSKNFPILQVEIELPVPDKLP
        PRGNR SLQT EL KT              L TLSVL DND VVS GRA LRQRRWE                       QVEIELPVPD LP
Subjt:  PRGNRSSLQTKELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVSTGRAPLRQRRWEFTVLNLVTHWASYLTLSKNFPILQVEIELPVPDKLP

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]5.0e-1446.09Show/hide
Query:  LCSEDFWTNPLGSSFHFFG----------------PRGNRSSLQTKELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVSTGRAPLRQRRWEFTVLNLVT
        LCS  FW N L  SF F                  PRGNR SLQT+E+ KT             PL TLSVL DNDAVVS G+APLRQRRWE        
Subjt:  LCSEDFWTNPLGSSFHFFG----------------PRGNRSSLQTKELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVSTGRAPLRQRRWEFTVLNLVT

Query:  HWASYLTLSKNFPILQVEIELPVPDKLP
              +  K F    VEIELPVPD LP
Subjt:  HWASYLTLSKNFPILQVEIELPVPDKLP

TYK27372.1 uncharacterized protein E5676_scaffold325G00500 [Cucumis melo var. makuwa]3.2e-0850.54Show/hide
Query:  PRGNRSSLQTKELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVSTGRAPLRQRRWEFTVLNLVTHWASYLTLSKNFPILQVEIELPVPDKLP
        PRGNR SLQT EL KT              L TLSVL DND VVS GRA LRQRRWE                       QVEIELPVPD LP
Subjt:  PRGNRSSLQTKELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVSTGRAPLRQRRWEFTVLNLVTHWASYLTLSKNFPILQVEIELPVPDKLP

TrEMBL top hitse value%identityAlignment
A0A5A7T4K8 Reverse transcriptase2.9e-0764Show/hide
Query:  HFFGPRGNRSSLQTKELAK---TPEAIWYRVHTGYIPLLTLSVLRDNDAV
        H F  R  + S QTK+LA+    PEAIWYRVH G+IPLLTLSVLR+ND V
Subjt:  HFFGPRGNRSSLQTKELAK---TPEAIWYRVHTGYIPLLTLSVLRDNDAV

A0A5A7T7M6 Reverse transcriptase2.4e-1446.09Show/hide
Query:  LCSEDFWTNPLGSSFHFFG----------------PRGNRSSLQTKELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVSTGRAPLRQRRWEFTVLNLVT
        LCS  FW N L  SF F                  PRGNR SLQT+E+ KT             PL TLSVL DNDAVVS G+APLRQRRWE        
Subjt:  LCSEDFWTNPLGSSFHFFG----------------PRGNRSSLQTKELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVSTGRAPLRQRRWEFTVLNLVT

Query:  HWASYLTLSKNFPILQVEIELPVPDKLP
              +  K F    VEIELPVPD LP
Subjt:  HWASYLTLSKNFPILQVEIELPVPDKLP

A0A5A7TPS6 Retrotrans_gag domain-containing protein1.5e-0850.54Show/hide
Query:  PRGNRSSLQTKELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVSTGRAPLRQRRWEFTVLNLVTHWASYLTLSKNFPILQVEIELPVPDKLP
        PRGNR SLQT EL KT              L TLSVL DND VVS GRA LRQRRWE                       QVEIELPVPD LP
Subjt:  PRGNRSSLQTKELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVSTGRAPLRQRRWEFTVLNLVTHWASYLTLSKNFPILQVEIELPVPDKLP

A0A5D3BTP3 Reverse transcriptase2.4e-1446.09Show/hide
Query:  LCSEDFWTNPLGSSFHFFG----------------PRGNRSSLQTKELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVSTGRAPLRQRRWEFTVLNLVT
        LCS  FW N L  SF F                  PRGNR SLQT+E+ KT             PL TLSVL DNDAVVS G+APLRQRRWE        
Subjt:  LCSEDFWTNPLGSSFHFFG----------------PRGNRSSLQTKELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVSTGRAPLRQRRWEFTVLNLVT

Query:  HWASYLTLSKNFPILQVEIELPVPDKLP
              +  K F    VEIELPVPD LP
Subjt:  HWASYLTLSKNFPILQVEIELPVPDKLP

A0A5D3DV36 Retrotrans_gag domain-containing protein1.5e-0850.54Show/hide
Query:  PRGNRSSLQTKELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVSTGRAPLRQRRWEFTVLNLVTHWASYLTLSKNFPILQVEIELPVPDKLP
        PRGNR SLQT EL KT              L TLSVL DND VVS GRA LRQRRWE                       QVEIELPVPD LP
Subjt:  PRGNRSSLQTKELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVSTGRAPLRQRRWEFTVLNLVTHWASYLTLSKNFPILQVEIELPVPDKLP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTTGCTGTGTTCGGAGGATTTCTGGACAAATCCGTTGGGAAGTTCATTTCATTTCTTTGGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAAAGAACTAGCCAA
GACTCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTACTGGACGGGCCCCACTAC
GACAAAGACGATGGGAATTTACAGTTTTAAATTTAGTCACTCATTGGGCTTCATATCTCACTCTTTCAAAAAATTTTCCCATTCTCCAGGTAGAGATCGAGCTCCCGGTG
CCTGATAAACTGCCATAG
mRNA sequenceShow/hide mRNA sequence
ATGGATTTGCTGTGTTCGGAGGATTTCTGGACAAATCCGTTGGGAAGTTCATTTCATTTCTTTGGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAAAGAACTAGCCAA
GACTCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTACTGGACGGGCCCCACTAC
GACAAAGACGATGGGAATTTACAGTTTTAAATTTAGTCACTCATTGGGCTTCATATCTCACTCTTTCAAAAAATTTTCCCATTCTCCAGGTAGAGATCGAGCTCCCGGTG
CCTGATAAACTGCCATAG
Protein sequenceShow/hide protein sequence
MDLLCSEDFWTNPLGSSFHFFGPRGNRSSLQTKELAKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVSTGRAPLRQRRWEFTVLNLVTHWASYLTLSKNFPILQVEIELPV
PDKLP