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Spg020587 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg020587
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold9:15658549..15662209
RNA-Seq ExpressionSpg020587
SyntenySpg020587
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]9.9e-1250Show/hide
Query:  VEIELPVPDTLPTSAESSRSSSSTWVELYIESVNV----------------------VNVLGGRCRC-LHAIFRTKLAGGPGGGVTPAARATAQATRGTI
        VEIELPVPDTLPTSAES  S+SSTW+ELY ESV+V                      V ++ G   C LHA+FR K AGGPGGGVT   +A+  +TR  +
Subjt:  VEIELPVPDTLPTSAESSRSSSSTWVELYIESVNV----------------------VNVLGGRCRC-LHAIFRTKLAGGPGGGVTPAARATAQATRGTI

KAA0062407.1 uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa]2.3e-1350.96Show/hide
Query:  MTEILNPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWVELYIESVNV------------------------VNVLGGRCRC-LHAIFRTKLAGGPG
        MTEIL+ RLYGTVCTQV+IELP+PDTLPTSAESS S+ +TW+ELY ESV+V                          ++ G   C LHA+FR K A  PG
Subjt:  MTEILNPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWVELYIESVNV------------------------VNVLGGRCRC-LHAIFRTKLAGGPG

Query:  GGVT
          VT
Subjt:  GGVT

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]1.9e-1860.19Show/hide
Query:  MTEILNPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVNV-VNVLGGRCR-----CLHAIFRTKLAGGPGGG
        MTEIL+PRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTW+ELY+E V+V +  L G  R      LHA+FR K AGGPGGG
Subjt:  MTEILNPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVNV-VNVLGGRCR-----CLHAIFRTKLAGGPGGG

Query:  VTP
        V P
Subjt:  VTP

TYK08952.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]5.2e-1348.31Show/hide
Query:  MTEILNPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVNV---------------------VNVLGGRCRC-
        MTEIL+ RL GTVCTQ                 VEIELPVPDTLPTSAE   S+SSTW+ELY+ESV+V                       ++ G   C 
Subjt:  MTEILNPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVNV---------------------VNVLGGRCRC-

Query:  LHAIFRTKLAGGPGGGVT
        LHA+FR K AGGP GGVT
Subjt:  LHAIFRTKLAGGPGGGVT

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]1.9e-1860.19Show/hide
Query:  MTEILNPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVNV-VNVLGGRCR-----CLHAIFRTKLAGGPGGG
        MTEIL+PRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTW+ELY+E V+V +  L G  R      LHA+FR K AGGPGGG
Subjt:  MTEILNPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVNV-VNVLGGRCR-----CLHAIFRTKLAGGPGGG

Query:  VTP
        V P
Subjt:  VTP

TrEMBL top hitse value%identityAlignment
A0A5A7TKT0 Reverse transcriptase4.8e-1250Show/hide
Query:  VEIELPVPDTLPTSAESSRSSSSTWVELYIESVNV----------------------VNVLGGRCRC-LHAIFRTKLAGGPGGGVTPAARATAQATRGTI
        VEIELPVPDTLPTSAES  S+SSTW+ELY ESV+V                      V ++ G   C LHA+FR K AGGPGGGVT   +A+  +TR  +
Subjt:  VEIELPVPDTLPTSAESSRSSSSTWVELYIESVNV----------------------VNVLGGRCRC-LHAIFRTKLAGGPGGGVTPAARATAQATRGTI

A0A5A7V638 Uncharacterized protein1.1e-1350.96Show/hide
Query:  MTEILNPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWVELYIESVNV------------------------VNVLGGRCRC-LHAIFRTKLAGGPG
        MTEIL+ RLYGTVCTQV+IELP+PDTLPTSAESS S+ +TW+ELY ESV+V                          ++ G   C LHA+FR K A  PG
Subjt:  MTEILNPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWVELYIESVNV------------------------VNVLGGRCRC-LHAIFRTKLAGGPG

Query:  GGVT
          VT
Subjt:  GGVT

A0A5A7VMG9 Reverse transcriptase9.0e-1960.19Show/hide
Query:  MTEILNPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVNV-VNVLGGRCR-----CLHAIFRTKLAGGPGGG
        MTEIL+PRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTW+ELY+E V+V +  L G  R      LHA+FR K AGGPGGG
Subjt:  MTEILNPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVNV-VNVLGGRCR-----CLHAIFRTKLAGGPGGG

Query:  VTP
        V P
Subjt:  VTP

A0A5D3CCC7 DNA/RNA polymerases superfamily protein2.5e-1348.31Show/hide
Query:  MTEILNPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVNV---------------------VNVLGGRCRC-
        MTEIL+ RL GTVCTQ                 VEIELPVPDTLPTSAE   S+SSTW+ELY+ESV+V                       ++ G   C 
Subjt:  MTEILNPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVNV---------------------VNVLGGRCRC-

Query:  LHAIFRTKLAGGPGGGVT
        LHA+FR K AGGP GGVT
Subjt:  LHAIFRTKLAGGPGGGVT

A0A5D3DX39 Reverse transcriptase9.0e-1960.19Show/hide
Query:  MTEILNPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVNV-VNVLGGRCR-----CLHAIFRTKLAGGPGGG
        MTEIL+PRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTW+ELY+E V+V +  L G  R      LHA+FR K AGGPGGG
Subjt:  MTEILNPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVNV-VNVLGGRCR-----CLHAIFRTKLAGGPGGG

Query:  VTP
        V P
Subjt:  VTP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGATATTGAACCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAG
CTCCAGTACATGGGTGGAGTTGTATATTGAGTCTGTCAATGTTGTAAATGTTTTAGGAGGACGATGTCGTTGCCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTC
CGGGAGGGGGTGTGACACCAGCAGCAAGAGCTACTGCACAAGCAACAAGAGGAACTATCCACACGCGTAAACTCCTTGGTGCTCTTATTTTTGCGATGGACAGAGTCTTT
TGGCCGCCTACCACTCAGGCCAAATCTGTTTGTGTGGCCAACTGCGCAACAAAGACCCAATGGCGCAGGCCCATCACAAGTGTGCGATTCCATGCCTCCGTCTGCGCCGA
GAGATCGAAGACCACCTCCACCACCGCCACCGCAGGAATAAAAAACACTTCTCTATTTTTTCTCTTATTTTCTTTTGTTTACTTTAGATGGGCATTTATGACACCCATAG
TTTGCCACTGCGCGAAGACGCAAACGCATCCCATGAGCGACACTAACGCAGCTAATTCAGTTGTTTTCCAAGTTTCTTCTCAGCGCAGGCACACATCCCAAGACGATCAA
GAGACAGACAAGATGGATGAAGGGACAATACTGACACAACTGACGCAAGTAATGCATGCGGACAACTCTAAGTGGAACAAGTTAGCGCATGACATGACCAGCGTCTCGAC
GTTGTCCTTAGAGCATCTCGACACTGGTTGGAGTAAGCGGCAAGAATCATACGTCATAGCGTCGCGACGCTGTGCGACTTGGGCAGCAAGGCAATCCGATTCTTCTCCTA
TAAAAGGGCCACTTCTCATTGGTGAAAGGCATCCAATTTTGGGGGGTTCTCCCCTAGCTCAATAG
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGATATTGAACCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAG
CTCCAGTACATGGGTGGAGTTGTATATTGAGTCTGTCAATGTTGTAAATGTTTTAGGAGGACGATGTCGTTGCCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTC
CGGGAGGGGGTGTGACACCAGCAGCAAGAGCTACTGCACAAGCAACAAGAGGAACTATCCACACGCGTAAACTCCTTGGTGCTCTTATTTTTGCGATGGACAGAGTCTTT
TGGCCGCCTACCACTCAGGCCAAATCTGTTTGTGTGGCCAACTGCGCAACAAAGACCCAATGGCGCAGGCCCATCACAAGTGTGCGATTCCATGCCTCCGTCTGCGCCGA
GAGATCGAAGACCACCTCCACCACCGCCACCGCAGGAATAAAAAACACTTCTCTATTTTTTCTCTTATTTTCTTTTGTTTACTTTAGATGGGCATTTATGACACCCATAG
TTTGCCACTGCGCGAAGACGCAAACGCATCCCATGAGCGACACTAACGCAGCTAATTCAGTTGTTTTCCAAGTTTCTTCTCAGCGCAGGCACACATCCCAAGACGATCAA
GAGACAGACAAGATGGATGAAGGGACAATACTGACACAACTGACGCAAGTAATGCATGCGGACAACTCTAAGTGGAACAAGTTAGCGCATGACATGACCAGCGTCTCGAC
GTTGTCCTTAGAGCATCTCGACACTGGTTGGAGTAAGCGGCAAGAATCATACGTCATAGCGTCGCGACGCTGTGCGACTTGGGCAGCAAGGCAATCCGATTCTTCTCCTA
TAAAAGGGCCACTTCTCATTGGTGAAAGGCATCCAATTTTGGGGGGTTCTCCCCTAGCTCAATAG
Protein sequenceShow/hide protein sequence
MTEILNPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWVELYIESVNVVNVLGGRCRCLHAIFRTKLAGGPGGGVTPAARATAQATRGTIHTRKLLGALIFAMDRVF
WPPTTQAKSVCVANCATKTQWRRPITSVRFHASVCAERSKTTSTTATAGIKNTSLFFLLFSFVYFRWAFMTPIVCHCAKTQTHPMSDTNAANSVVFQVSSQRRHTSQDDQ
ETDKMDEGTILTQLTQVMHADNSKWNKLAHDMTSVSTLSLEHLDTGWSKRQESYVIASRRCATWAARQSDSSPIKGPLLIGERHPILGGSPLAQ