; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg020588 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg020588
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Genome locationscaffold9:16613949..16617464
RNA-Seq ExpressionSpg020588
SyntenySpg020588
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040811.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.3e-2836.96Show/hide
Query:  LIQFGTLDPVVVRFQKEATMRGPQGKYNSVEDENEDWTLVVRRKKQKQSYARKESRLYRDSKRKVKSQRKKGK--KKSRKSKPVVEESEDFFCPPQPITL
        LIQFGT +P++VRFQ++      Q K   +EDE E+W +V  +K+++ S  +  S  ++   +   S +KKG+  KK  KSKP+  + EDF  P Q ITL
Subjt:  LIQFGTLDPVVVRFQKEATMRGPQGKYNSVEDENEDWTLVVRRKKQKQSYARKESRLYRDSKRKVKSQRKKGK--KKSRKSKPVVEESEDFFCPPQPITL

Query:  AEYFPRSFLDDSKEEALETVTCHVVDVGEDDDVLASSSGVAAGLGYKSPEPVRITRKGKAKVANINHITAEEVDDSKEEENVNKRASVFRRIRPPVARAS
        AE+FPRSFL+D  +E LE   CH   + E D+                                 N+ + EEVD+S E   + +R SVF RI+P   R+S
Subjt:  AEYFPRSFLDDSKEEALETVTCHVVDVGEDDDVLASSSGVAAGLGYKSPEPVRITRKGKAKVANINHITAEEVDDSKEEENVNKRASVFRRIRPPVARAS

Query:  VFQRLIVNETKEERVQPTNNSTRPSAFRRLNMSIGEEESTLSIPDITRPSAFRRLNM
        VFQRL +   +EE   PT+  TR SAF+ L++S  ++       D    SAF RL M
Subjt:  VFQRLIVNETKEERVQPTNNSTRPSAFRRLNMSIGEEESTLSIPDITRPSAFRRLNM

KAA0050736.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.3e-2636.54Show/hide
Query:  LIQFGTLDPVVVRFQKEATMRGPQGKYNSVEDENEDWTLVVRRKKQKQSYARKESRLYRDSKRKVKSQRKKGK--KKSRKSKPVVEESEDFFCPPQPITL
        LIQFGT +P++VRFQ++      Q K   +EDE E+W +V  +K+++ S  + +S  ++   +   S +KKG+  KK  K KP+ E+ E F  P + ITL
Subjt:  LIQFGTLDPVVVRFQKEATMRGPQGKYNSVEDENEDWTLVVRRKKQKQSYARKESRLYRDSKRKVKSQRKKGK--KKSRKSKPVVEESEDFFCPPQPITL

Query:  AEYFPRSFLDDSKEEALETVTCHVVDVGEDDDVLASSSGVAAGLGYKSPEPVRITRKGKAKVANINHITAEEVDDSKEEENVNKRASVFRRIRPPVARAS
        AE+FPRSFL+D  EE LE   CH   + E D+                                 N+ + EEVD+S E   + +R SVF RI+P   R+S
Subjt:  AEYFPRSFLDDSKEEALETVTCHVVDVGEDDDVLASSSGVAAGLGYKSPEPVRITRKGKAKVANINHITAEEVDDSKEEENVNKRASVFRRIRPPVARAS

Query:  VFQRLIVNETKEERVQPTNNSTRPSAFRRLNMSIGEEESTLSIPDITRP--SAFRRLNMS
        VFQRL +   +EE   P +  TR SAF+RL++S  ++          RP  SAF RL M+
Subjt:  VFQRLIVNETKEERVQPTNNSTRPSAFRRLNMSIGEEESTLSIPDITRP--SAFRRLNMS

KAA0052018.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.8e-2636.92Show/hide
Query:  LIQFGTLDPVVVRFQKEATMRGPQGKYNSVEDENEDWTLVVRRKKQKQSYARKESRLYRDSKRKVKSQRKKGK--KKSRKSKPVVEESEDFFCPPQPITL
        LIQFGT +P++VRFQ++      Q K    EDE E+W  VV +K+++ S  +  S  ++   +   S +KKG+  KK  K KP+  + EDF  P Q ITL
Subjt:  LIQFGTLDPVVVRFQKEATMRGPQGKYNSVEDENEDWTLVVRRKKQKQSYARKESRLYRDSKRKVKSQRKKGK--KKSRKSKPVVEESEDFFCPPQPITL

Query:  AEYFPRSFLDDSKEEALETVTCHVVDVGEDDDVLASSSGVAAGLGYKSPEPVRITRKGKAKVANINHITAEEVDDSKEEENVNKRASVFRRIRPPVARAS
        AE+ PRSFL+D  EE LE   CH   + E D+                                 N+ + EE+D+S E   + +R SVF RI+P   R+S
Subjt:  AEYFPRSFLDDSKEEALETVTCHVVDVGEDDDVLASSSGVAAGLGYKSPEPVRITRKGKAKVANINHITAEEVDDSKEEENVNKRASVFRRIRPPVARAS

Query:  VFQRLIVNETKEERVQPTNNSTRPSAFRRLNMSIGEEESTLSIPDITRP--SAFRRLNMS
        VFQRL +   KEE   PT+   R SAF+RL++S  ++          RP  SAF RL M+
Subjt:  VFQRLIVNETKEERVQPTNNSTRPSAFRRLNMSIGEEESTLSIPDITRP--SAFRRLNMS

KAA0062458.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.8e-2634.88Show/hide
Query:  LIQFGTLDPVVVRFQKEATMRGPQGKYNSVEDENEDWTLVVRRKKQKQSYARKESRLYRDSKRKVKSQRKKGK--KKSRKSKPVVEESEDFFCPPQPITL
        LIQFG  +P++V+FQ++ T    Q K   +EDE ++W +V  +K+++ S  + +S  ++   +     +KKG+  KK RK K +  + EDF  P Q ITL
Subjt:  LIQFGTLDPVVVRFQKEATMRGPQGKYNSVEDENEDWTLVVRRKKQKQSYARKESRLYRDSKRKVKSQRKKGK--KKSRKSKPVVEESEDFFCPPQPITL

Query:  AEYFPRSFLDDSKEEALETVTCHVVDVGEDDDVLASSSGVAAGLGYKSPEPVRITRKGKAKVANINHITAEEVDDSKEEENVNKRASVFRRIRPPVARAS
         E+ PR FL+D  EE LE   CH V + E D+                                 N ++++EVD S E   + KR S+F RI+P   R+S
Subjt:  AEYFPRSFLDDSKEEALETVTCHVVDVGEDDDVLASSSGVAAGLGYKSPEPVRITRKGKAKVANINHITAEEVDDSKEEENVNKRASVFRRIRPPVARAS

Query:  VFQRLIVNETKEERVQPTNNSTRPSAFRRLNMSIGEEESTLSIPDITRPSAFRRLNMS
        VFQRL +   +EE   PT+ STR SAF+RL++S  ++       D    S F RL M+
Subjt:  VFQRLIVNETKEERVQPTNNSTRPSAFRRLNMSIGEEESTLSIPDITRPSAFRRLNMS

TYK27425.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.8e-2634.88Show/hide
Query:  LIQFGTLDPVVVRFQKEATMRGPQGKYNSVEDENEDWTLVVRRKKQKQSYARKESRLYRDSKRKVKSQRKKGK--KKSRKSKPVVEESEDFFCPPQPITL
        LIQFG  +P++V+FQ++ T    Q K   +EDE ++W +V  +K+++ S  + +S  ++   +     +KKG+  KK RK K +  + EDF  P Q ITL
Subjt:  LIQFGTLDPVVVRFQKEATMRGPQGKYNSVEDENEDWTLVVRRKKQKQSYARKESRLYRDSKRKVKSQRKKGK--KKSRKSKPVVEESEDFFCPPQPITL

Query:  AEYFPRSFLDDSKEEALETVTCHVVDVGEDDDVLASSSGVAAGLGYKSPEPVRITRKGKAKVANINHITAEEVDDSKEEENVNKRASVFRRIRPPVARAS
         E+ PR FL+D  EE LE   CH V + E D+                                 N ++++EVD S E   + KR S+F RI+P   R+S
Subjt:  AEYFPRSFLDDSKEEALETVTCHVVDVGEDDDVLASSSGVAAGLGYKSPEPVRITRKGKAKVANINHITAEEVDDSKEEENVNKRASVFRRIRPPVARAS

Query:  VFQRLIVNETKEERVQPTNNSTRPSAFRRLNMSIGEEESTLSIPDITRPSAFRRLNMS
        VFQRL +   +EE   PT+ STR SAF+RL++S  ++       D    S F RL M+
Subjt:  VFQRLIVNETKEERVQPTNNSTRPSAFRRLNMSIGEEESTLSIPDITRPSAFRRLNMS

TrEMBL top hitse value%identityAlignment
A0A5A7TGM1 Retrotransposon gag protein1.1e-2836.96Show/hide
Query:  LIQFGTLDPVVVRFQKEATMRGPQGKYNSVEDENEDWTLVVRRKKQKQSYARKESRLYRDSKRKVKSQRKKGK--KKSRKSKPVVEESEDFFCPPQPITL
        LIQFGT +P++VRFQ++      Q K   +EDE E+W +V  +K+++ S  +  S  ++   +   S +KKG+  KK  KSKP+  + EDF  P Q ITL
Subjt:  LIQFGTLDPVVVRFQKEATMRGPQGKYNSVEDENEDWTLVVRRKKQKQSYARKESRLYRDSKRKVKSQRKKGK--KKSRKSKPVVEESEDFFCPPQPITL

Query:  AEYFPRSFLDDSKEEALETVTCHVVDVGEDDDVLASSSGVAAGLGYKSPEPVRITRKGKAKVANINHITAEEVDDSKEEENVNKRASVFRRIRPPVARAS
        AE+FPRSFL+D  +E LE   CH   + E D+                                 N+ + EEVD+S E   + +R SVF RI+P   R+S
Subjt:  AEYFPRSFLDDSKEEALETVTCHVVDVGEDDDVLASSSGVAAGLGYKSPEPVRITRKGKAKVANINHITAEEVDDSKEEENVNKRASVFRRIRPPVARAS

Query:  VFQRLIVNETKEERVQPTNNSTRPSAFRRLNMSIGEEESTLSIPDITRPSAFRRLNM
        VFQRL +   +EE   PT+  TR SAF+ L++S  ++       D    SAF RL M
Subjt:  VFQRLIVNETKEERVQPTNNSTRPSAFRRLNMSIGEEESTLSIPDITRPSAFRRLNM

A0A5A7U974 Retrotransposon gag protein6.2e-2736.54Show/hide
Query:  LIQFGTLDPVVVRFQKEATMRGPQGKYNSVEDENEDWTLVVRRKKQKQSYARKESRLYRDSKRKVKSQRKKGK--KKSRKSKPVVEESEDFFCPPQPITL
        LIQFGT +P++VRFQ++      Q K   +EDE E+W +V  +K+++ S  + +S  ++   +   S +KKG+  KK  K KP+ E+ E F  P + ITL
Subjt:  LIQFGTLDPVVVRFQKEATMRGPQGKYNSVEDENEDWTLVVRRKKQKQSYARKESRLYRDSKRKVKSQRKKGK--KKSRKSKPVVEESEDFFCPPQPITL

Query:  AEYFPRSFLDDSKEEALETVTCHVVDVGEDDDVLASSSGVAAGLGYKSPEPVRITRKGKAKVANINHITAEEVDDSKEEENVNKRASVFRRIRPPVARAS
        AE+FPRSFL+D  EE LE   CH   + E D+                                 N+ + EEVD+S E   + +R SVF RI+P   R+S
Subjt:  AEYFPRSFLDDSKEEALETVTCHVVDVGEDDDVLASSSGVAAGLGYKSPEPVRITRKGKAKVANINHITAEEVDDSKEEENVNKRASVFRRIRPPVARAS

Query:  VFQRLIVNETKEERVQPTNNSTRPSAFRRLNMSIGEEESTLSIPDITRP--SAFRRLNMS
        VFQRL +   +EE   P +  TR SAF+RL++S  ++          RP  SAF RL M+
Subjt:  VFQRLIVNETKEERVQPTNNSTRPSAFRRLNMSIGEEESTLSIPDITRP--SAFRRLNMS

A0A5A7U9V3 Retrotransposon gag protein1.4e-2636.92Show/hide
Query:  LIQFGTLDPVVVRFQKEATMRGPQGKYNSVEDENEDWTLVVRRKKQKQSYARKESRLYRDSKRKVKSQRKKGK--KKSRKSKPVVEESEDFFCPPQPITL
        LIQFGT +P++VRFQ++      Q K    EDE E+W  VV +K+++ S  +  S  ++   +   S +KKG+  KK  K KP+  + EDF  P Q ITL
Subjt:  LIQFGTLDPVVVRFQKEATMRGPQGKYNSVEDENEDWTLVVRRKKQKQSYARKESRLYRDSKRKVKSQRKKGK--KKSRKSKPVVEESEDFFCPPQPITL

Query:  AEYFPRSFLDDSKEEALETVTCHVVDVGEDDDVLASSSGVAAGLGYKSPEPVRITRKGKAKVANINHITAEEVDDSKEEENVNKRASVFRRIRPPVARAS
        AE+ PRSFL+D  EE LE   CH   + E D+                                 N+ + EE+D+S E   + +R SVF RI+P   R+S
Subjt:  AEYFPRSFLDDSKEEALETVTCHVVDVGEDDDVLASSSGVAAGLGYKSPEPVRITRKGKAKVANINHITAEEVDDSKEEENVNKRASVFRRIRPPVARAS

Query:  VFQRLIVNETKEERVQPTNNSTRPSAFRRLNMSIGEEESTLSIPDITRP--SAFRRLNMS
        VFQRL +   KEE   PT+   R SAF+RL++S  ++          RP  SAF RL M+
Subjt:  VFQRLIVNETKEERVQPTNNSTRPSAFRRLNMSIGEEESTLSIPDITRP--SAFRRLNMS

A0A5A7V4E9 Retrotransposon gag protein2.3e-2634.88Show/hide
Query:  LIQFGTLDPVVVRFQKEATMRGPQGKYNSVEDENEDWTLVVRRKKQKQSYARKESRLYRDSKRKVKSQRKKGK--KKSRKSKPVVEESEDFFCPPQPITL
        LIQFG  +P++V+FQ++ T    Q K   +EDE ++W +V  +K+++ S  + +S  ++   +     +KKG+  KK RK K +  + EDF  P Q ITL
Subjt:  LIQFGTLDPVVVRFQKEATMRGPQGKYNSVEDENEDWTLVVRRKKQKQSYARKESRLYRDSKRKVKSQRKKGK--KKSRKSKPVVEESEDFFCPPQPITL

Query:  AEYFPRSFLDDSKEEALETVTCHVVDVGEDDDVLASSSGVAAGLGYKSPEPVRITRKGKAKVANINHITAEEVDDSKEEENVNKRASVFRRIRPPVARAS
         E+ PR FL+D  EE LE   CH V + E D+                                 N ++++EVD S E   + KR S+F RI+P   R+S
Subjt:  AEYFPRSFLDDSKEEALETVTCHVVDVGEDDDVLASSSGVAAGLGYKSPEPVRITRKGKAKVANINHITAEEVDDSKEEENVNKRASVFRRIRPPVARAS

Query:  VFQRLIVNETKEERVQPTNNSTRPSAFRRLNMSIGEEESTLSIPDITRPSAFRRLNMS
        VFQRL +   +EE   PT+ STR SAF+RL++S  ++       D    S F RL M+
Subjt:  VFQRLIVNETKEERVQPTNNSTRPSAFRRLNMSIGEEESTLSIPDITRPSAFRRLNMS

A0A5D3DVW2 Retrotransposon gag protein2.3e-2634.88Show/hide
Query:  LIQFGTLDPVVVRFQKEATMRGPQGKYNSVEDENEDWTLVVRRKKQKQSYARKESRLYRDSKRKVKSQRKKGK--KKSRKSKPVVEESEDFFCPPQPITL
        LIQFG  +P++V+FQ++ T    Q K   +EDE ++W +V  +K+++ S  + +S  ++   +     +KKG+  KK RK K +  + EDF  P Q ITL
Subjt:  LIQFGTLDPVVVRFQKEATMRGPQGKYNSVEDENEDWTLVVRRKKQKQSYARKESRLYRDSKRKVKSQRKKGK--KKSRKSKPVVEESEDFFCPPQPITL

Query:  AEYFPRSFLDDSKEEALETVTCHVVDVGEDDDVLASSSGVAAGLGYKSPEPVRITRKGKAKVANINHITAEEVDDSKEEENVNKRASVFRRIRPPVARAS
         E+ PR FL+D  EE LE   CH V + E D+                                 N ++++EVD S E   + KR S+F RI+P   R+S
Subjt:  AEYFPRSFLDDSKEEALETVTCHVVDVGEDDDVLASSSGVAAGLGYKSPEPVRITRKGKAKVANINHITAEEVDDSKEEENVNKRASVFRRIRPPVARAS

Query:  VFQRLIVNETKEERVQPTNNSTRPSAFRRLNMSIGEEESTLSIPDITRPSAFRRLNMS
        VFQRL +   +EE   PT+ STR SAF+RL++S  ++       D    S F RL M+
Subjt:  VFQRLIVNETKEERVQPTNNSTRPSAFRRLNMSIGEEESTLSIPDITRPSAFRRLNMS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATTGAGATCAAGGAGGATCATACTCCTCTGGCTGTTGTAAGCAAAATCTCAAAGTTGATTGAAGAATCCTCTAAGGATAAGGTTGCAGTCAAAGACAACCCACTGTTCGA
ATCTGTCGTTCCAACATCTAAGCAGCCAAAGGATACACTAAATCCTGATGTGATGTCCGTCATGATGGCTGATGTAGACCAAGATGAAAGAATGGCAGAGATGGAAAGGA
AACTCAATCTCTTAATGAAGGCAGTTGATGAGAGAGATCTTGAGATTGCCTATTTGAAGAACCAGCTGCAGAGCCGAGAAGTGGCTGAATTAATTCAATTTGGGACCCTT
GATCCTGTAGTGGTTCGATTTCAAAAAGAAGCCACAATGAGGGGACCCCAAGGAAAATATAATTCCGTTGAAGATGAGAACGAAGACTGGACCCTTGTCGTTCGCCGCAA
AAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCGCCTATATCGAGATAGTAAAAGAAAAGTTAAGTCTCAAAGGAAGAAAGGAAAAAAGAAGTCAAGGAAGTCAAAGC
CTGTCGTGGAGGAAAGTGAAGATTTCTTTTGCCCTCCACAACCCATAACTTTGGCAGAATACTTCCCAAGGAGCTTTCTCGATGATAGTAAAGAGGAGGCACTTGAAACT
GTCACGTGTCACGTTGTGGACGTGGGGGAAGATGATGACGTCCTTGCTAGCTCCTCGGGAGTGGCGGCAGGACTTGGATATAAGTCGCCTGAACCAGTTCGCATAACAAG
AAAAGGGAAGGCGAAAGTGGCAAACATAAATCATATAACAGCAGAGGAGGTCGATGACTCAAAAGAAGAAGAGAACGTCAACAAACGAGCTTCTGTTTTTAGGCGCATCA
GGCCACCAGTTGCTCGTGCTTCAGTATTTCAAAGATTAATTGTGAATGAAACAAAAGAAGAAAGAGTACAGCCTACCAATAACTCCACGCGACCGTCAGCTTTTCGAAGG
TTAAATATGTCCATTGGGGAAGAAGAGAGTACACTTTCAATTCCGGATATCACACGACCTTCAGCTTTTAGAAGATTAAATATGTCTGTTGCGGAAGAAGATGGCACATT
TTCA
mRNA sequenceShow/hide mRNA sequence
ATTGAGATCAAGGAGGATCATACTCCTCTGGCTGTTGTAAGCAAAATCTCAAAGTTGATTGAAGAATCCTCTAAGGATAAGGTTGCAGTCAAAGACAACCCACTGTTCGA
ATCTGTCGTTCCAACATCTAAGCAGCCAAAGGATACACTAAATCCTGATGTGATGTCCGTCATGATGGCTGATGTAGACCAAGATGAAAGAATGGCAGAGATGGAAAGGA
AACTCAATCTCTTAATGAAGGCAGTTGATGAGAGAGATCTTGAGATTGCCTATTTGAAGAACCAGCTGCAGAGCCGAGAAGTGGCTGAATTAATTCAATTTGGGACCCTT
GATCCTGTAGTGGTTCGATTTCAAAAAGAAGCCACAATGAGGGGACCCCAAGGAAAATATAATTCCGTTGAAGATGAGAACGAAGACTGGACCCTTGTCGTTCGCCGCAA
AAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCGCCTATATCGAGATAGTAAAAGAAAAGTTAAGTCTCAAAGGAAGAAAGGAAAAAAGAAGTCAAGGAAGTCAAAGC
CTGTCGTGGAGGAAAGTGAAGATTTCTTTTGCCCTCCACAACCCATAACTTTGGCAGAATACTTCCCAAGGAGCTTTCTCGATGATAGTAAAGAGGAGGCACTTGAAACT
GTCACGTGTCACGTTGTGGACGTGGGGGAAGATGATGACGTCCTTGCTAGCTCCTCGGGAGTGGCGGCAGGACTTGGATATAAGTCGCCTGAACCAGTTCGCATAACAAG
AAAAGGGAAGGCGAAAGTGGCAAACATAAATCATATAACAGCAGAGGAGGTCGATGACTCAAAAGAAGAAGAGAACGTCAACAAACGAGCTTCTGTTTTTAGGCGCATCA
GGCCACCAGTTGCTCGTGCTTCAGTATTTCAAAGATTAATTGTGAATGAAACAAAAGAAGAAAGAGTACAGCCTACCAATAACTCCACGCGACCGTCAGCTTTTCGAAGG
TTAAATATGTCCATTGGGGAAGAAGAGAGTACACTTTCAATTCCGGATATCACACGACCTTCAGCTTTTAGAAGATTAAATATGTCTGTTGCGGAAGAAGATGGCACATT
TTCA
Protein sequenceShow/hide protein sequence
IEIKEDHTPLAVVSKISKLIEESSKDKVAVKDNPLFESVVPTSKQPKDTLNPDVMSVMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQSREVAELIQFGTL
DPVVVRFQKEATMRGPQGKYNSVEDENEDWTLVVRRKKQKQSYARKESRLYRDSKRKVKSQRKKGKKKSRKSKPVVEESEDFFCPPQPITLAEYFPRSFLDDSKEEALET
VTCHVVDVGEDDDVLASSSGVAAGLGYKSPEPVRITRKGKAKVANINHITAEEVDDSKEEENVNKRASVFRRIRPPVARASVFQRLIVNETKEERVQPTNNSTRPSAFRR
LNMSIGEEESTLSIPDITRPSAFRRLNMSVAEEDGTFS