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Spg020604 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg020604
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionGag/pol protein
Genome locationscaffold9:17575567..17587918
RNA-Seq ExpressionSpg020604
SyntenySpg020604
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025994.1 retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa]2.1e-0557.78Show/hide
Query:  IVLRLAWVRVTNTPTQYAFLFGDKTEWEAGDMTTQEGIHYFPHLG
        + + ++ VRV   PTQYA+ FGDKTEW AG+  TQ+GIH FP LG
Subjt:  IVLRLAWVRVTNTPTQYAFLFGDKTEWEAGDMTTQEGIHYFPHLG
KAA0043328.1 gag/pol protein [Cucumis melo var. makuwa]2.8e-0557.78Show/hide
Query:  LRLAWVRVTNTPTQYAFLFGDKTEWEAGDMTTQEGIHYFPHLGEV
        LR  ++RV   PTQYA+ F DKTEW AG++ TQ+GIH FP LG +
Subjt:  LRLAWVRVTNTPTQYAFLFGDKTEWEAGDMTTQEGIHYFPHLGEV
KAA0065950.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]3.6e-0568.42Show/hide
Query:  VRVTNTPTQYAFLFGDKTEWEAGDMTTQEGIHYFPHLG
        VRV   PTQYA+ FGDKTEW AG++ TQ+GIH FP LG
Subjt:  VRVTNTPTQYAFLFGDKTEWEAGDMTTQEGIHYFPHLG
TYK19425.1 gag/pol protein [Cucumis melo var. makuwa]1.2e-0560Show/hide
Query:  LRLAWVRVTNTPTQYAFLFGDKTEWEAGDMTTQEGIHYFPHLGEV
        LR  ++R+   PTQYA+ FGDKTEW AG++TTQ+GIH+FP LG +
Subjt:  LRLAWVRVTNTPTQYAFLFGDKTEWEAGDMTTQEGIHYFPHLGEV
TYK27885.1 retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa]6.0e-0860Show/hide
Query:  LRLAWVRVTNTPTQYAFLFGDKTEWEAGDMTTQEGIHYFPHLGEVDECPL
        LR  ++RV   PTQYA+ F DKTEW AG++ TQ+GIH+FP LG VD+C L
Subjt:  LRLAWVRVTNTPTQYAFLFGDKTEWEAGDMTTQEGIHYFPHLGEVDECPL
TrEMBL top hitse value%identityAlignment
A0A5A7SJY0 Retrotransposon protein putative ty3-gypsy sub-class1.0e-0557.78Show/hide
Query:  IVLRLAWVRVTNTPTQYAFLFGDKTEWEAGDMTTQEGIHYFPHLG
        + + ++ VRV   PTQYA+ FGDKTEW AG+  TQ+GIH FP LG
Subjt:  IVLRLAWVRVTNTPTQYAFLFGDKTEWEAGDMTTQEGIHYFPHLG
A0A5A7TKJ4 Gag/pol protein1.3e-0557.78Show/hide
Query:  LRLAWVRVTNTPTQYAFLFGDKTEWEAGDMTTQEGIHYFPHLGEV
        LR  ++RV   PTQYA+ F DKTEW AG++ TQ+GIH FP LG +
Subjt:  LRLAWVRVTNTPTQYAFLFGDKTEWEAGDMTTQEGIHYFPHLGEV
A0A5A7VFG5 Ty1-copia retrotransposon protein1.8e-0568.42Show/hide
Query:  VRVTNTPTQYAFLFGDKTEWEAGDMTTQEGIHYFPHLG
        VRV   PTQYA+ FGDKTEW AG++ TQ+GIH FP LG
Subjt:  VRVTNTPTQYAFLFGDKTEWEAGDMTTQEGIHYFPHLG
A0A5D3D7C0 Gag/pol protein6.0e-0660Show/hide
Query:  LRLAWVRVTNTPTQYAFLFGDKTEWEAGDMTTQEGIHYFPHLGEV
        LR  ++R+   PTQYA+ FGDKTEW AG++TTQ+GIH+FP LG +
Subjt:  LRLAWVRVTNTPTQYAFLFGDKTEWEAGDMTTQEGIHYFPHLGEV
A0A5D3DX33 Retrovirus-related pol polyprotein from transposon tnt 1-942.9e-0860Show/hide
Query:  LRLAWVRVTNTPTQYAFLFGDKTEWEAGDMTTQEGIHYFPHLGEVDECPL
        LR  ++RV   PTQYA+ F DKTEW AG++ TQ+GIH+FP LG VD+C L
Subjt:  LRLAWVRVTNTPTQYAFLFGDKTEWEAGDMTTQEGIHYFPHLGEVDECPL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGGCGGTACAGCAGCTAAGGCTTACGCAAAGGGGTGGTTTTCACGGTCAGTAGCTCTCGATCGTGTGCCACCCATTGTTGCAGTGTGGGTGTCAAGCGGCAGCGT
TTTCAGCAGCTTTCGGGGTGGATTTCTGGCGTTTCGTTCAGTGGGGATTGTCCTTCGATTAGCATGGGTGAGAGTGACCAATACGCCGACTCAATATGCCTTCCTTTTTG
GGGACAAGACCGAGTGGGAGGCTGGGGACATGACAACACAAGAAGGAATTCACTACTTCCCACATCTAGGAGAAGTAGATGAGTGTCCATTAGGTCCCCCTGCTAGCTCA
GTTATAGCGGGGAAGATCAAATGGTGGTGTTCTTCGTTGTTGCAGAGCAAACAAAAATCATCCGTTGAAGTATTCAGAGTCGTCAACGGAGCTGTGGTTGAGTTGTGGAT
GCGAGATCTGACTCGCTTTGGTTATAGAAGTGTATTGTCTTATTCTCAGGACGGTGTTGAGCTTATGATCAGGCACGTAATTCGTGCGCCAGATGACACCCAGGCATGTT
TTCATGCGTCAGTTGCTCCACTGTATTTTATCAACCACACGCCGCCGCCGCCCTTTCTCTTCTTCGGTCACCGCCAGCCGCACGTCGCCGCTCAGATCTGTGTGCTGCCC
ACCGCCGCCGCGCCTTATGGTAAGTCTTTCTCTCTCTCTCGTGGGTCTCAAACTCGACCTCACACTCTCTCTCTCTACGGTAGATCAGTCACTCCGCCACTGCCCAGATC
CGGCCGTCGTAAAGTTGTGCCGCCACCGTCGCTGTCTTCAGCCAAACCTCACATCGCCGCCGCCTTCAACCAAACAGCCAAACGCCACCTCCAGCCGCTTTGGATCTTGT
TTTCAAAGCTGTATCTTGGAATGCTAAATCGAGAATCTGGAGTTGATTGGGTGTTCGGGACGCTAAAAGAAGCCAAAGAAGCAAAAAGGAATCAAGTTGGAGGCTTGACA
AAGTGGGCATACTCGAGAGCTAGCGTCGAGACGCTAACAAACTTTCCATATCTGATTCAGGAGGCAAAGGTCCTAGCGTTGAGACGCTGTGACAATAGCGTCTCGATGCT
CTCGATTTTTCCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCAGGCGGTACAGCAGCTAAGGCTTACGCAAAGGGGTGGTTTTCACGGTCAGTAGCTCTCGATCGTGTGCCACCCATTGTTGCAGTGTGGGTGTCAAGCGGCAGCGT
TTTCAGCAGCTTTCGGGGTGGATTTCTGGCGTTTCGTTCAGTGGGGATTGTCCTTCGATTAGCATGGGTGAGAGTGACCAATACGCCGACTCAATATGCCTTCCTTTTTG
GGGACAAGACCGAGTGGGAGGCTGGGGACATGACAACACAAGAAGGAATTCACTACTTCCCACATCTAGGAGAAGTAGATGAGTGTCCATTAGGTCCCCCTGCTAGCTCA
GTTATAGCGGGGAAGATCAAATGGTGGTGTTCTTCGTTGTTGCAGAGCAAACAAAAATCATCCGTTGAAGTATTCAGAGTCGTCAACGGAGCTGTGGTTGAGTTGTGGAT
GCGAGATCTGACTCGCTTTGGTTATAGAAGTGTATTGTCTTATTCTCAGGACGGTGTTGAGCTTATGATCAGGCACGTAATTCGTGCGCCAGATGACACCCAGGCATGTT
TTCATGCGTCAGTTGCTCCACTGTATTTTATCAACCACACGCCGCCGCCGCCCTTTCTCTTCTTCGGTCACCGCCAGCCGCACGTCGCCGCTCAGATCTGTGTGCTGCCC
ACCGCCGCCGCGCCTTATGGTAAGTCTTTCTCTCTCTCTCGTGGGTCTCAAACTCGACCTCACACTCTCTCTCTCTACGGTAGATCAGTCACTCCGCCACTGCCCAGATC
CGGCCGTCGTAAAGTTGTGCCGCCACCGTCGCTGTCTTCAGCCAAACCTCACATCGCCGCCGCCTTCAACCAAACAGCCAAACGCCACCTCCAGCCGCTTTGGATCTTGT
TTTCAAAGCTGTATCTTGGAATGCTAAATCGAGAATCTGGAGTTGATTGGGTGTTCGGGACGCTAAAAGAAGCCAAAGAAGCAAAAAGGAATCAAGTTGGAGGCTTGACA
AAGTGGGCATACTCGAGAGCTAGCGTCGAGACGCTAACAAACTTTCCATATCTGATTCAGGAGGCAAAGGTCCTAGCGTTGAGACGCTGTGACAATAGCGTCTCGATGCT
CTCGATTTTTCCTTAA
Protein sequenceShow/hide protein sequence
MAGGTAAKAYAKGWFSRSVALDRVPPIVAVWVSSGSVFSSFRGGFLAFRSVGIVLRLAWVRVTNTPTQYAFLFGDKTEWEAGDMTTQEGIHYFPHLGEVDECPLGPPASS
VIAGKIKWWCSSLLQSKQKSSVEVFRVVNGAVVELWMRDLTRFGYRSVLSYSQDGVELMIRHVIRAPDDTQACFHASVAPLYFINHTPPPPFLFFGHRQPHVAAQICVLP
TAAAPYGKSFSLSRGSQTRPHTLSLYGRSVTPPLPRSGRRKVVPPPSLSSAKPHIAAAFNQTAKRHLQPLWILFSKLYLGMLNRESGVDWVFGTLKEAKEAKRNQVGGLT
KWAYSRASVETLTNFPYLIQEAKVLALRRCDNSVSMLSIFP