; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg020613 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg020613
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionPMD domain-containing protein
Genome locationscaffold9:18288182..18291978
RNA-Seq ExpressionSpg020613
SyntenySpg020613
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036933.1 uncharacterized protein E6C27_scaffold86G00060 [Cucumis melo var. makuwa]2.1e-4453.22Show/hide
Query:  MYIPVNRFTIQALLEFWDPTYRYFAFQDFDLVPTIEEYHTMLNIKEKGGEMIYCFNPQLTAKRTLSKFL-VVHLKEVQKNVKVKGVEESISADYLTELAP
        MYIPVN F ++A++ F DP Y  F F   DL+PTIEEY  ML++ +K  E++Y FNP+ T KRTLSKFL  VH  E+QK +K KG EE++  DYL ++  
Subjt:  MYIPVNRFTIQALLEFWDPTYRYFAFQDFDLVPTIEEYHTMLNIKEKGGEMIYCFNPQLTAKRTLSKFL-VVHLKEVQKNVKVKGVEESISADYLTELAP

Query:  KHINEEKGLILLALCIYGMILYPRVKGYVDGDVLKLFFSIEQGVDPAIPLLAETVRALNYYAGASTQSLYC
         +I+E+KGL LLALCIYG +++P+ +GYVD  V+KLFF +E+GV+P IP+LAET R+LNY        L C
Subjt:  KHINEEKGLILLALCIYGMILYPRVKGYVDGDVLKLFFSIEQGVDPAIPLLAETVRALNYYAGASTQSLYC

KAA0036941.1 girdin-like [Cucumis melo var. makuwa]2.7e-4731.49Show/hide
Query:  MYIPVNRFTIQALLEFWDPTYRYFAFQDFDLVPTIEEYHTMLNIKEKGGEMIYCFNPQLTAKRTLSKFL-VVHLKEVQKNVKVKGVEESISADYLTELAP
        MYIPVN F ++A++ F DP Y  F F   +L+PTIEEY  ML++ EK  E++Y FNP+ T KRTLSKFL  VH  E+QK +KVKG EE++  DYL ++  
Subjt:  MYIPVNRFTIQALLEFWDPTYRYFAFQDFDLVPTIEEYHTMLNIKEKGGEMIYCFNPQLTAKRTLSKFL-VVHLKEVQKNVKVKGVEESISADYLTELAP

Query:  KHINEEKGLILLALCIYGMILYPRVKGYVDGDVLKLFFSIEQGVDPAIPLLAETVRALNYYAGASTQSLYC-----------------------------
         +I+E+KGL LLALCIYG +++P+ +GYVD  V+KLFF +E+GV+P IP+LAET R+LNY        L C                             
Subjt:  KHINEEKGLILLALCIYGMILYPRVKGYVDGDVLKLFFSIEQGVDPAIPLLAETVRALNYYAGASTQSLYC-----------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -EDSNEKKRQVLTSWRTVRRINGNSHSKGVTPEYLQWRIKRSK-IPITTRDNVGESSNRAVDEPNLLATERKELVGRNQTLKLENEKLQQEVKCLMDQVT
         ED   KKRQ + +W+++R+I    H +GVT  Y  W+  R K I   +R+ V      + ++PN    +  EL  +N+ L+ ENEKL++E    MD  T
Subjt:  -EDSNEKKRQVLTSWRTVRRINGNSHSKGVTPEYLQWRIKRSK-IPITTRDNVGESSNRAVDEPNLLATERKELVGRNQTLKLENEKLQQEVKCLMDQVT

Query:  QTSGKLEEVERVSKNR
            +LE+ +   KN+
Subjt:  QTSGKLEEVERVSKNR

KAA0036949.1 girdin-like [Cucumis melo var. makuwa]2.1e-4453.22Show/hide
Query:  MYIPVNRFTIQALLEFWDPTYRYFAFQDFDLVPTIEEYHTMLNIKEKGGEMIYCFNPQLTAKRTLSKFL-VVHLKEVQKNVKVKGVEESISADYLTELAP
        MYIPVN F ++A++ F DP Y  F F   DL+PTIEEY  ML++ +K  E++Y FNP+ T KRTLSKFL  VH  E+QK +K KG EE++  DYL ++  
Subjt:  MYIPVNRFTIQALLEFWDPTYRYFAFQDFDLVPTIEEYHTMLNIKEKGGEMIYCFNPQLTAKRTLSKFL-VVHLKEVQKNVKVKGVEESISADYLTELAP

Query:  KHINEEKGLILLALCIYGMILYPRVKGYVDGDVLKLFFSIEQGVDPAIPLLAETVRALNYYAGASTQSLYC
         +I+E+KGL LLALCIYG +++P+ +GYVD  V+KLFF +E+GV+P IP+LAET R+LNY        L C
Subjt:  KHINEEKGLILLALCIYGMILYPRVKGYVDGDVLKLFFSIEQGVDPAIPLLAETVRALNYYAGASTQSLYC

KAA0060423.1 uncharacterized protein E6C27_scaffold22G002420 [Cucumis melo var. makuwa]2.1e-4754.39Show/hide
Query:  MYIPVNRFTIQALLEFWDPTYRYFAFQDFDLVPTIEEYHTMLNIKEKGGEMIYCFNPQLTAKRTLSKFL-VVHLKEVQKNVKVKGVEESISADYLTELAP
        MYIPVN F ++A++ FWDP Y  F F   DL+PTIEEY  ML++ EK  E++Y FNP+ T KRTLSKFL  VH  E+QK +K+KG EE++  DYL ++  
Subjt:  MYIPVNRFTIQALLEFWDPTYRYFAFQDFDLVPTIEEYHTMLNIKEKGGEMIYCFNPQLTAKRTLSKFL-VVHLKEVQKNVKVKGVEESISADYLTELAP

Query:  KHINEEKGLILLALCIYGMILYPRVKGYVDGDVLKLFFSIEQGVDPAIPLLAETVRALNYYAGASTQSLYC
         +++E+KGL LLALCIYG +++P+ +GYVDG V+KLFF +E+GV+P IP+LAET R+LNY        L C
Subjt:  KHINEEKGLILLALCIYGMILYPRVKGYVDGDVLKLFFSIEQGVDPAIPLLAETVRALNYYAGASTQSLYC

KAA0066094.1 girdin-like [Cucumis melo var. makuwa]1.6e-4739Show/hide
Query:  MYIPVNRFTIQALLEFWDPTYRYFAFQDFDLVPTIEEYHTMLNIKEKGGEMIYCFNPQLTAKRTLSKFL-VVHLKEVQKNVKVKGVEESISADYLTELAP
        MYIPVN F ++A++ FWDP Y  F F   DL+PTIEEY  ML++  K  E++Y FNP+ T KRTLSKFL  VH  ++QK +KVKG EE++  DYL ++  
Subjt:  MYIPVNRFTIQALLEFWDPTYRYFAFQDFDLVPTIEEYHTMLNIKEKGGEMIYCFNPQLTAKRTLSKFL-VVHLKEVQKNVKVKGVEESISADYLTELAP

Query:  KHINEEKGLILLALCIYGMILYPRVKGYVDGDVLKL----FFSIE-----QGVDPAIPLLAETVRALNYYAGASTQ-----SLYCEDSNEKKRQVLTSWR
         +++E+KGL LLALCIYG +++P+ +GYVDG  +      F S+       GV+    L+   V    +            S   ED   KKRQ + +W+
Subjt:  KHINEEKGLILLALCIYGMILYPRVKGYVDGDVLKL----FFSIE-----QGVDPAIPLLAETVRALNYYAGASTQ-----SLYCEDSNEKKRQVLTSWR

Query:  TVRRINGNSHSKGVTPEYLQWRIKRSK-IPITTRDNVGESSNRAVDEPNLLATERKELVGRNQTLKLENEKLQQEVKCLMDQVTQTSGKLEEVERVSKNR
        ++R+I    H +GVT  Y  W+  R K I   +R+ V      + ++PN    +  EL  +N+ L+ ENEKL++E    MD  T    +LE+ +   KN+
Subjt:  TVRRINGNSHSKGVTPEYLQWRIKRSK-IPITTRDNVGESSNRAVDEPNLLATERKELVGRNQTLKLENEKLQQEVKCLMDQVTQTSGKLEEVERVSKNR

TrEMBL top hitse value%identityAlignment
A0A5A7T1W2 Retrotrans_gag domain-containing protein1.0e-4453.22Show/hide
Query:  MYIPVNRFTIQALLEFWDPTYRYFAFQDFDLVPTIEEYHTMLNIKEKGGEMIYCFNPQLTAKRTLSKFL-VVHLKEVQKNVKVKGVEESISADYLTELAP
        MYIPVN F ++A++ F DP Y  F F   DL+PTIEEY  ML++ +K  E++Y FNP+ T KRTLSKFL  VH  E+QK +K KG EE++  DYL ++  
Subjt:  MYIPVNRFTIQALLEFWDPTYRYFAFQDFDLVPTIEEYHTMLNIKEKGGEMIYCFNPQLTAKRTLSKFL-VVHLKEVQKNVKVKGVEESISADYLTELAP

Query:  KHINEEKGLILLALCIYGMILYPRVKGYVDGDVLKLFFSIEQGVDPAIPLLAETVRALNYYAGASTQSLYC
         +I+E+KGL LLALCIYG +++P+ +GYVD  V+KLFF +E+GV+P IP+LAET R+LNY        L C
Subjt:  KHINEEKGLILLALCIYGMILYPRVKGYVDGDVLKLFFSIEQGVDPAIPLLAETVRALNYYAGASTQSLYC

A0A5A7T5S7 Girdin-like1.3e-4731.49Show/hide
Query:  MYIPVNRFTIQALLEFWDPTYRYFAFQDFDLVPTIEEYHTMLNIKEKGGEMIYCFNPQLTAKRTLSKFL-VVHLKEVQKNVKVKGVEESISADYLTELAP
        MYIPVN F ++A++ F DP Y  F F   +L+PTIEEY  ML++ EK  E++Y FNP+ T KRTLSKFL  VH  E+QK +KVKG EE++  DYL ++  
Subjt:  MYIPVNRFTIQALLEFWDPTYRYFAFQDFDLVPTIEEYHTMLNIKEKGGEMIYCFNPQLTAKRTLSKFL-VVHLKEVQKNVKVKGVEESISADYLTELAP

Query:  KHINEEKGLILLALCIYGMILYPRVKGYVDGDVLKLFFSIEQGVDPAIPLLAETVRALNYYAGASTQSLYC-----------------------------
         +I+E+KGL LLALCIYG +++P+ +GYVD  V+KLFF +E+GV+P IP+LAET R+LNY        L C                             
Subjt:  KHINEEKGLILLALCIYGMILYPRVKGYVDGDVLKLFFSIEQGVDPAIPLLAETVRALNYYAGASTQSLYC-----------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -EDSNEKKRQVLTSWRTVRRINGNSHSKGVTPEYLQWRIKRSK-IPITTRDNVGESSNRAVDEPNLLATERKELVGRNQTLKLENEKLQQEVKCLMDQVT
         ED   KKRQ + +W+++R+I    H +GVT  Y  W+  R K I   +R+ V      + ++PN    +  EL  +N+ L+ ENEKL++E    MD  T
Subjt:  -EDSNEKKRQVLTSWRTVRRINGNSHSKGVTPEYLQWRIKRSK-IPITTRDNVGESSNRAVDEPNLLATERKELVGRNQTLKLENEKLQQEVKCLMDQVT

Query:  QTSGKLEEVERVSKNR
            +LE+ +   KN+
Subjt:  QTSGKLEEVERVSKNR

A0A5A7T6E2 Girdin-like1.0e-4453.22Show/hide
Query:  MYIPVNRFTIQALLEFWDPTYRYFAFQDFDLVPTIEEYHTMLNIKEKGGEMIYCFNPQLTAKRTLSKFL-VVHLKEVQKNVKVKGVEESISADYLTELAP
        MYIPVN F ++A++ F DP Y  F F   DL+PTIEEY  ML++ +K  E++Y FNP+ T KRTLSKFL  VH  E+QK +K KG EE++  DYL ++  
Subjt:  MYIPVNRFTIQALLEFWDPTYRYFAFQDFDLVPTIEEYHTMLNIKEKGGEMIYCFNPQLTAKRTLSKFL-VVHLKEVQKNVKVKGVEESISADYLTELAP

Query:  KHINEEKGLILLALCIYGMILYPRVKGYVDGDVLKLFFSIEQGVDPAIPLLAETVRALNYYAGASTQSLYC
         +I+E+KGL LLALCIYG +++P+ +GYVD  V+KLFF +E+GV+P IP+LAET R+LNY        L C
Subjt:  KHINEEKGLILLALCIYGMILYPRVKGYVDGDVLKLFFSIEQGVDPAIPLLAETVRALNYYAGASTQSLYC

A0A5A7UWQ6 Uncharacterized protein1.0e-4754.39Show/hide
Query:  MYIPVNRFTIQALLEFWDPTYRYFAFQDFDLVPTIEEYHTMLNIKEKGGEMIYCFNPQLTAKRTLSKFL-VVHLKEVQKNVKVKGVEESISADYLTELAP
        MYIPVN F ++A++ FWDP Y  F F   DL+PTIEEY  ML++ EK  E++Y FNP+ T KRTLSKFL  VH  E+QK +K+KG EE++  DYL ++  
Subjt:  MYIPVNRFTIQALLEFWDPTYRYFAFQDFDLVPTIEEYHTMLNIKEKGGEMIYCFNPQLTAKRTLSKFL-VVHLKEVQKNVKVKGVEESISADYLTELAP

Query:  KHINEEKGLILLALCIYGMILYPRVKGYVDGDVLKLFFSIEQGVDPAIPLLAETVRALNYYAGASTQSLYC
         +++E+KGL LLALCIYG +++P+ +GYVDG V+KLFF +E+GV+P IP+LAET R+LNY        L C
Subjt:  KHINEEKGLILLALCIYGMILYPRVKGYVDGDVLKLFFSIEQGVDPAIPLLAETVRALNYYAGASTQSLYC

A0A5A7VFL0 Girdin-like7.6e-4839Show/hide
Query:  MYIPVNRFTIQALLEFWDPTYRYFAFQDFDLVPTIEEYHTMLNIKEKGGEMIYCFNPQLTAKRTLSKFL-VVHLKEVQKNVKVKGVEESISADYLTELAP
        MYIPVN F ++A++ FWDP Y  F F   DL+PTIEEY  ML++  K  E++Y FNP+ T KRTLSKFL  VH  ++QK +KVKG EE++  DYL ++  
Subjt:  MYIPVNRFTIQALLEFWDPTYRYFAFQDFDLVPTIEEYHTMLNIKEKGGEMIYCFNPQLTAKRTLSKFL-VVHLKEVQKNVKVKGVEESISADYLTELAP

Query:  KHINEEKGLILLALCIYGMILYPRVKGYVDGDVLKL----FFSIE-----QGVDPAIPLLAETVRALNYYAGASTQ-----SLYCEDSNEKKRQVLTSWR
         +++E+KGL LLALCIYG +++P+ +GYVDG  +      F S+       GV+    L+   V    +            S   ED   KKRQ + +W+
Subjt:  KHINEEKGLILLALCIYGMILYPRVKGYVDGDVLKL----FFSIE-----QGVDPAIPLLAETVRALNYYAGASTQ-----SLYCEDSNEKKRQVLTSWR

Query:  TVRRINGNSHSKGVTPEYLQWRIKRSK-IPITTRDNVGESSNRAVDEPNLLATERKELVGRNQTLKLENEKLQQEVKCLMDQVTQTSGKLEEVERVSKNR
        ++R+I    H +GVT  Y  W+  R K I   +R+ V      + ++PN    +  EL  +N+ L+ ENEKL++E    MD  T    +LE+ +   KN+
Subjt:  TVRRINGNSHSKGVTPEYLQWRIKRSK-IPITTRDNVGESSNRAVDEPNLLATERKELVGRNQTLKLENEKLQQEVKCLMDQVTQTSGKLEEVERVSKNR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATATTCCAGTTAATCGATTCACCATCCAGGCTTTGTTAGAATTCTGGGACCCGACCTACAGGTATTTCGCATTCCAAGATTTTGACTTGGTCCCGACCATTGAGGA
GTACCACACGATGTTGAACATTAAAGAAAAAGGTGGAGAAATGATCTATTGTTTCAACCCACAGTTAACTGCAAAGAGAACTTTATCCAAATTTCTAGTTGTACACCTGA
AGGAAGTGCAGAAAAATGTGAAAGTGAAAGGGGTCGAAGAGTCTATATCTGCAGATTATCTAACAGAACTCGCTCCCAAACACATAAATGAAGAAAAGGGCTTGATTTTG
TTAGCTTTATGCATCTACGGGATGATCTTGTATCCCAGAGTTAAAGGATATGTGGATGGCGATGTCTTGAAGCTATTCTTTAGCATTGAGCAAGGGGTGGATCCAGCCAT
ACCTCTTCTAGCGGAAACGGTTCGGGCGCTCAATTATTATGCGGGAGCTTCCACACAGTCCCTCTATTGCGAGGATTCTAACGAAAAGAAGCGACAAGTGCTGACTTCCT
GGAGAACAGTTAGAAGGATAAATGGCAATAGTCATTCTAAGGGAGTTACTCCAGAATATTTGCAATGGCGCATTAAGAGGAGCAAGATCCCAATTACGACTCGTGACAAT
GTGGGAGAATCATCTAATAGAGCAGTAGATGAGCCTAACCTGTTAGCGACAGAGCGGAAAGAGTTAGTGGGAAGAAATCAAACATTGAAACTAGAAAATGAAAAATTACA
GCAAGAGGTCAAATGTTTGATGGACCAGGTAACTCAAACTAGTGGCAAACTCGAAGAAGTAGAGAGAGTTTCAAAAAACCGAGCCAACGAGATAGAGATTATGTGTTGGG
ATTGTTCTCTCATCTCTCATTCTTCTCCATTGCTTGATGCTTCAAGCATTCCCTTCCCATTCCCTATCTTATATAGACTCCCACAAGTCGTTCTTGGCCCGGAGTATAGT
AGGGAAGACTCTAGAGAACATGCATGCTTTAGGAGTAAAATTGAATGTCTTAAGTGCTTTCGATCTTCAATTGCTTCCGCATGTGTAATATGTACACCTTCAGTACCTTC
CACTTTCGATCTTGTAATTGCTTCCGCTCTGATACCAATTGAAGGTGTACATATTACACATGCGGAAGCAATTGAAGATCGAAAGCACTTAAGACATTCAATTTTACTCC
TAAAGCATGCATGTTCTAGAAAAGACAGAATAGAGAGTATAGAAAACACCAACCTTTGTAGCTCACTTATGTTGAACTCCTTGTGGTGTTTGCCTCTCCTATGCTCCTTG
GACAACCTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTATATTCCAGTTAATCGATTCACCATCCAGGCTTTGTTAGAATTCTGGGACCCGACCTACAGGTATTTCGCATTCCAAGATTTTGACTTGGTCCCGACCATTGAGGA
GTACCACACGATGTTGAACATTAAAGAAAAAGGTGGAGAAATGATCTATTGTTTCAACCCACAGTTAACTGCAAAGAGAACTTTATCCAAATTTCTAGTTGTACACCTGA
AGGAAGTGCAGAAAAATGTGAAAGTGAAAGGGGTCGAAGAGTCTATATCTGCAGATTATCTAACAGAACTCGCTCCCAAACACATAAATGAAGAAAAGGGCTTGATTTTG
TTAGCTTTATGCATCTACGGGATGATCTTGTATCCCAGAGTTAAAGGATATGTGGATGGCGATGTCTTGAAGCTATTCTTTAGCATTGAGCAAGGGGTGGATCCAGCCAT
ACCTCTTCTAGCGGAAACGGTTCGGGCGCTCAATTATTATGCGGGAGCTTCCACACAGTCCCTCTATTGCGAGGATTCTAACGAAAAGAAGCGACAAGTGCTGACTTCCT
GGAGAACAGTTAGAAGGATAAATGGCAATAGTCATTCTAAGGGAGTTACTCCAGAATATTTGCAATGGCGCATTAAGAGGAGCAAGATCCCAATTACGACTCGTGACAAT
GTGGGAGAATCATCTAATAGAGCAGTAGATGAGCCTAACCTGTTAGCGACAGAGCGGAAAGAGTTAGTGGGAAGAAATCAAACATTGAAACTAGAAAATGAAAAATTACA
GCAAGAGGTCAAATGTTTGATGGACCAGGTAACTCAAACTAGTGGCAAACTCGAAGAAGTAGAGAGAGTTTCAAAAAACCGAGCCAACGAGATAGAGATTATGTGTTGGG
ATTGTTCTCTCATCTCTCATTCTTCTCCATTGCTTGATGCTTCAAGCATTCCCTTCCCATTCCCTATCTTATATAGACTCCCACAAGTCGTTCTTGGCCCGGAGTATAGT
AGGGAAGACTCTAGAGAACATGCATGCTTTAGGAGTAAAATTGAATGTCTTAAGTGCTTTCGATCTTCAATTGCTTCCGCATGTGTAATATGTACACCTTCAGTACCTTC
CACTTTCGATCTTGTAATTGCTTCCGCTCTGATACCAATTGAAGGTGTACATATTACACATGCGGAAGCAATTGAAGATCGAAAGCACTTAAGACATTCAATTTTACTCC
TAAAGCATGCATGTTCTAGAAAAGACAGAATAGAGAGTATAGAAAACACCAACCTTTGTAGCTCACTTATGTTGAACTCCTTGTGGTGTTTGCCTCTCCTATGCTCCTTG
GACAACCTCTAG
Protein sequenceShow/hide protein sequence
MYIPVNRFTIQALLEFWDPTYRYFAFQDFDLVPTIEEYHTMLNIKEKGGEMIYCFNPQLTAKRTLSKFLVVHLKEVQKNVKVKGVEESISADYLTELAPKHINEEKGLIL
LALCIYGMILYPRVKGYVDGDVLKLFFSIEQGVDPAIPLLAETVRALNYYAGASTQSLYCEDSNEKKRQVLTSWRTVRRINGNSHSKGVTPEYLQWRIKRSKIPITTRDN
VGESSNRAVDEPNLLATERKELVGRNQTLKLENEKLQQEVKCLMDQVTQTSGKLEEVERVSKNRANEIEIMCWDCSLISHSSPLLDASSIPFPFPILYRLPQVVLGPEYS
REDSREHACFRSKIECLKCFRSSIASACVICTPSVPSTFDLVIASALIPIEGVHITHAEAIEDRKHLRHSILLLKHACSRKDRIESIENTNLCSSLMLNSLWCLPLLCSL
DNL