CuGenDBv2

Gene ID	Spg020616
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	E3 ubiquitin-protein ligase RNF170
Genome location	scaffold9:16707026..16707682
RNA-Seq Expression	Spg020616
Synteny	Spg020616
Gene Ontology terms	GO:0016567 - protein ubiquitination (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0046872 - metal ion binding (molecular function) GO:0061630 - ubiquitin protein ligase activity (molecular function)
InterPro domains	IPR010652 - Domain of unknown function DUF1232 IPR038896 - E3 ubiquitin-protein ligase RNF170

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7037201.1 E3 ubiquitin-protein ligase-like protein [Cucurbita argyrosperma subsp. argyrosperma]

6.1e-16

80.7

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Query:  FLQMVLGVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIATIYRSVLYNRHGGT
        +  M L VVY VSPIDIIPEALLGLFGLMDD FILLICFLY+A +YRSVL+NRHGGT
Subjt:  FLQMVLGVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIATIYRSVLYNRHGGT

XP_008463070.1 PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Cucumis melo]

2.5e-17

85.96

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Query:  FLQMVLGVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIATIYRSVLYNRHGGT
        ++ MVL VVY VSPIDIIPEALLGLFGLMDDI ILLICFLYIA +YRSVLYNRHGGT
Subjt:  FLQMVLGVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIATIYRSVLYNRHGGT

XP_022932121.1 E3 ubiquitin-protein ligase RNF170-like [Cucurbita moschata]

6.1e-16

80.7

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Query:  FLQMVLGVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIATIYRSVLYNRHGGT
        +  M L VVY VSPIDIIPEALLGLFGLMDD FILLICFLY+A +YRSVL+NRHGGT
Subjt:  FLQMVLGVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIATIYRSVLYNRHGGT

XP_031743956.1 E3 ubiquitin-protein ligase RNF170 isoform X5 [Cucumis sativus]

3.2e-17

84.21

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Query:  FLQMVLGVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIATIYRSVLYNRHGGT
        ++ MVL V+Y VSPIDIIPEALLGLFGLMDDI ILLICFLYIA +YRSVLYNRHGGT
Subjt:  FLQMVLGVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIATIYRSVLYNRHGGT

XP_038884720.1 E3 ubiquitin-protein ligase RNF170-like isoform X2 [Benincasa hispida]

1.7e-18

91.23

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Query:  FLQMVLGVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIATIYRSVLYNRHGGT
        +  MVL VVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIA IYRSVLYNRHGGT
Subjt:  FLQMVLGVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIATIYRSVLYNRHGGT

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CIS2 E3 ubiquitin-protein ligase RNF170

1.2e-17

85.96

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Query:  FLQMVLGVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIATIYRSVLYNRHGGT
        ++ MVL VVY VSPIDIIPEALLGLFGLMDDI ILLICFLYIA +YRSVLYNRHGGT
Subjt:  FLQMVLGVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIATIYRSVLYNRHGGT

A0A6A5PAC4 RING-type E3 ubiquitin transferase

1.0e-13

64.91

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Query:  FLQMVLGVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIATIYRSVLYNRHGGT
        F+QM+L  VY +SPIDIIPE +LG+ GL+DD+ I+LICFL++AT+YRSVL+ RHGG+
Subjt:  FLQMVLGVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIATIYRSVLYNRHGGT

A0A6J1DFH0 E3 ubiquitin-protein ligase RNF170

5.0e-16

78.95

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Query:  FLQMVLGVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIATIYRSVLYNRHGGT
        ++ MVL VVY +SPIDIIPEA+LG+FGLMDDIFILLICFLYIA +YRSVLY RHGG+
Subjt:  FLQMVLGVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIATIYRSVLYNRHGGT

A0A6J1EVH0 E3 ubiquitin-protein ligase RNF170

2.9e-16

80.7

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Query:  FLQMVLGVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIATIYRSVLYNRHGGT
        +  M L VVY VSPIDIIPEALLGLFGLMDD FILLICFLY+A +YRSVL+NRHGGT
Subjt:  FLQMVLGVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIATIYRSVLYNRHGGT

A0A6J1I9X5 E3 ubiquitin-protein ligase RNF170

2.9e-16

80.7

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Query:  FLQMVLGVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIATIYRSVLYNRHGGT
        +  M L VVY VSPIDIIPEALLGLFGLMDD FILLICFLY+A +YRSVL+NRHGGT
Subjt:  FLQMVLGVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIATIYRSVLYNRHGGT

SwissProt top hits

e value

%identity

Alignment

F1MK05 E3 ubiquitin-protein ligase RNF170

2.2e-05

43.18

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Query:  YAVSPIDIIPEALLGLFGLMDDIFILLICFLYIATIYRSVLYNR
        Y +SP+D +PEAL G+ G +DD F++ +  +YI+ +YR V+  R
Subjt:  YAVSPIDIIPEALLGLFGLMDDIFILLICFLYIATIYRSVLYNR

Q28DS3 E3 ubiquitin-protein ligase RNF170

4.5e-06

52.27

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Query:  YAVSPIDIIPEALLGLFGLMDDIFILLICFLYIATIYRSVLYNR
        Y VSP+DIIPEA+ GL G +DD F+L +  +YI+ +YR V+  R
Subjt:  YAVSPIDIIPEALLGLFGLMDDIFILLICFLYIATIYRSVLYNR

Q5PPX5 E3 ubiquitin-protein ligase RNF170

1.6e-06

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Query:  VVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIATIYRSVLYNR
        ++Y VSP+DIIPEAL G+ G +DD+F+L +  +YI+ +YR V+  R
Subjt:  VVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIATIYRSVLYNR

Q7SZN2 E3 ubiquitin-protein ligase RNF170

9.1e-07

46.94

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Query:  VVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIATIYRSVLYNRHGG
        + Y VSP+D +PE +LGL G +DD F++L+ F+YI+ +YR V+  R  G
Subjt:  VVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIATIYRSVLYNRHGG

Q96K19 E3 ubiquitin-protein ligase RNF170

2.2e-05

43.18

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Query:  YAVSPIDIIPEALLGLFGLMDDIFILLICFLYIATIYRSVLYNR
        Y +SP+D +PEAL G+ G +DD F++ +  +YI+ +YR V+  R
Subjt:  YAVSPIDIIPEALLGLFGLMDDIFILLICFLYIATIYRSVLYNR

Arabidopsis top hits

e value

%identity

Alignment

AT1G22510.1 RING/U-box protein with domain of unknown function (DUF 1232)

1.9e-15

57.89

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Query:  FLQMVLGVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIATIYRSVLYNRHGGT
        ++ ++L  +Y +SPIDIIPE +LG+ GL+DD+ I LICFL++A +YRSVLY+RHGG+
Subjt:  FLQMVLGVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIATIYRSVLYNRHGGT

AT1G22510.2 RING/U-box protein with domain of unknown function (DUF 1232)

1.9e-15

57.89

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Query:  FLQMVLGVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIATIYRSVLYNRHGGT
        ++ ++L  +Y +SPIDIIPE +LG+ GL+DD+ I LICFL++A +YRSVLY+RHGG+
Subjt:  FLQMVLGVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIATIYRSVLYNRHGGT

AT1G72175.1 RING/U-box protein with domain of unknown function (DUF 1232)

1.2e-14

59.65

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Query:  FLQMVLGVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIATIYRSVLYNRHGGT
        ++ M+L  VY +SPIDIIPE +LG+ GL+DD+ I LICFL++A +YRSVLY RH G+
Subjt:  FLQMVLGVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIATIYRSVLYNRHGGT

Sequences

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CDS sequence

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ATGTCAAGCCGTTGTACTTGTTCGTCGTCCTTTATAAATTATAACTGCTGTAATTTTTTTTTACAGATGGTACTAGGTGTAGTCTATGCTGTGAGTCCAATCGATATCAT
ACCCGAAGCATTACTAGGATTATTTGGACTGATGGATGATATCTTTATACTGCTCATCTGCTTCCTTTATATTGCTACTATATATCGATCGGTACTCTATAATCGCCATG
GGGGAACTTGA

mRNA sequence

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Protein sequence

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MSSRCTCSSSFINYNCCNFFLQMVLGVVYAVSPIDIIPEALLGLFGLMDDIFILLICFLYIATIYRSVLYNRHGGT

Spg020616 (gene) of Sponge gourd (cylindrica) v1 genome