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Spg020652 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg020652
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold9:16392832..16394038
RNA-Seq ExpressionSpg020652
SyntenySpg020652
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062407.1 uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa]1.6e-1348.62Show/hide
Query:  MTEILSPRLYGTVCTQVEIELSVPDTLPTSAESSRSSSSTWVELYIE------------------------SEGQRVSLEEDDVRWLHAIFRTELAGGSG
        MTEILS RLYGTVCTQV+IEL +PDTLPTSAESS S+ +TW+ELY E                        S G    +  DDV WLHA+FR + A   G
Subjt:  MTEILSPRLYGTVCTQVEIELSVPDTLPTSAESSRSSSSTWVELYIE------------------------SEGQRVSLEEDDVRWLHAIFRTELAGGSG

Query:  GGVDEIYVS
          V   Y S
Subjt:  GGVDEIYVS

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]1.3e-1858.42Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELSVPDTLPTSAESSRSSSSTWVELYIESEGQRV-----SLEEDDVRWLHAIFRTELAGGSGGG
        MTEILSPRLYGTVCTQ                 VEIEL VPDTLPTSAESS S+SSTW+ELY+E     +      + EDDV WLHA+FR + AGG GGG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELSVPDTLPTSAESSRSSSSTWVELYIESEGQRV-----SLEEDDVRWLHAIFRTELAGGSGGG

Query:  V
        V
Subjt:  V

TYK08952.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.7e-1347.86Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELSVPDTLPTSAESSRSSSSTWVELYIES---------------------EGQRVSLEEDDVRW
        MTEILS RL GTVCTQ                 VEIEL VPDTLPTSAE   S+SSTW+ELY+ES                     EG    +  DDV W
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELSVPDTLPTSAESSRSSSSTWVELYIES---------------------EGQRVSLEEDDVRW

Query:  LHAIFRTELAGGSGGGV
        LHA+FR + AGG  GGV
Subjt:  LHAIFRTELAGGSGGGV

TYK25935.1 gag/pol protein [Cucumis melo var. makuwa]7.4e-1153.57Show/hide
Query:  VEIELSVPDTLPTSAESSRSSSSTWVELYIES---------------------EGQRVSLEEDDVRWLHAIFRTELAGGSGGGV
        VEIEL +PDTLPTSAESS S+SSTW+ELY ES                     EG    +  DDV WLHAIFR + AGG GGGV
Subjt:  VEIELSVPDTLPTSAESSRSSSSTWVELYIES---------------------EGQRVSLEEDDVRWLHAIFRTELAGGSGGGV

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]1.3e-1858.42Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELSVPDTLPTSAESSRSSSSTWVELYIESEGQRV-----SLEEDDVRWLHAIFRTELAGGSGGG
        MTEILSPRLYGTVCTQ                 VEIEL VPDTLPTSAESS S+SSTW+ELY+E     +      + EDDV WLHA+FR + AGG GGG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELSVPDTLPTSAESSRSSSSTWVELYIESEGQRV-----SLEEDDVRWLHAIFRTELAGGSGGG

Query:  V
        V
Subjt:  V

TrEMBL top hitse value%identityAlignment
A0A5A7T9P7 Gag/pol protein3.6e-1153.57Show/hide
Query:  VEIELSVPDTLPTSAESSRSSSSTWVELYIES---------------------EGQRVSLEEDDVRWLHAIFRTELAGGSGGGV
        VEIEL +PDTLPTSAESS S+SSTW+ELY ES                     EG    +  DDV WLHAIFR + AGG GGGV
Subjt:  VEIELSVPDTLPTSAESSRSSSSTWVELYIES---------------------EGQRVSLEEDDVRWLHAIFRTELAGGSGGGV

A0A5A7V638 Uncharacterized protein7.7e-1448.62Show/hide
Query:  MTEILSPRLYGTVCTQVEIELSVPDTLPTSAESSRSSSSTWVELYIE------------------------SEGQRVSLEEDDVRWLHAIFRTELAGGSG
        MTEILS RLYGTVCTQV+IEL +PDTLPTSAESS S+ +TW+ELY E                        S G    +  DDV WLHA+FR + A   G
Subjt:  MTEILSPRLYGTVCTQVEIELSVPDTLPTSAESSRSSSSTWVELYIE------------------------SEGQRVSLEEDDVRWLHAIFRTELAGGSG

Query:  GGVDEIYVS
          V   Y S
Subjt:  GGVDEIYVS

A0A5A7VMG9 Reverse transcriptase6.1e-1958.42Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELSVPDTLPTSAESSRSSSSTWVELYIESEGQRV-----SLEEDDVRWLHAIFRTELAGGSGGG
        MTEILSPRLYGTVCTQ                 VEIEL VPDTLPTSAESS S+SSTW+ELY+E     +      + EDDV WLHA+FR + AGG GGG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELSVPDTLPTSAESSRSSSSTWVELYIESEGQRV-----SLEEDDVRWLHAIFRTELAGGSGGG

Query:  V
        V
Subjt:  V

A0A5D3CCC7 DNA/RNA polymerases superfamily protein1.3e-1347.86Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELSVPDTLPTSAESSRSSSSTWVELYIES---------------------EGQRVSLEEDDVRW
        MTEILS RL GTVCTQ                 VEIEL VPDTLPTSAE   S+SSTW+ELY+ES                     EG    +  DDV W
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELSVPDTLPTSAESSRSSSSTWVELYIES---------------------EGQRVSLEEDDVRW

Query:  LHAIFRTELAGGSGGGV
        LHA+FR + AGG  GGV
Subjt:  LHAIFRTELAGGSGGGV

A0A5D3DX39 Reverse transcriptase6.1e-1958.42Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELSVPDTLPTSAESSRSSSSTWVELYIESEGQRV-----SLEEDDVRWLHAIFRTELAGGSGGG
        MTEILSPRLYGTVCTQ                 VEIEL VPDTLPTSAESS S+SSTW+ELY+E     +      + EDDV WLHA+FR + AGG GGG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELSVPDTLPTSAESSRSSSSTWVELYIESEGQRV-----SLEEDDVRWLHAIFRTELAGGSGGG

Query:  V
        V
Subjt:  V

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCTCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAG
CTCCAGTACATGGGTGGAGTTGTATATTGAGTCTGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTGAGCTAGCAGGTG
GTTCGGGAGGGGGTGTTGACGAGATTTATGTGTCTGGTGATGTAGATGAGGGGGTTCACGAGGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCTCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAG
CTCCAGTACATGGGTGGAGTTGTATATTGAGTCTGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTGAGCTAGCAGGTG
GTTCGGGAGGGGGTGTTGACGAGATTTATGTGTCTGGTGATGTAGATGAGGGGGTTCACGAGGGATGA
Protein sequenceShow/hide protein sequence
MTEILSPRLYGTVCTQVEIELSVPDTLPTSAESSRSSSSTWVELYIESEGQRVSLEEDDVRWLHAIFRTELAGGSGGGVDEIYVSGDVDEGVHEG