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Spg020662 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg020662
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold9:15686084..15687907
RNA-Seq ExpressionSpg020662
SyntenySpg020662
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041121.1 hypothetical protein E6C27_scaffold128G00290 [Cucumis melo var. makuwa]5.1e-1061.43Show/hide
Query:  RGNRPSLQARELAKTNSIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDKLPKSAKS
        RGNRPSLQ  EL  T SIDYMTEILS RLYGTVCT                  VEIELPVPD+LP SA+S
Subjt:  RGNRPSLQARELAKTNSIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDKLPKSAKS

KAA0052217.1 hypothetical protein E6C27_scaffold207G00280 [Cucumis melo var. makuwa]2.2e-1349.55Show/hide
Query:  RGNRPSLQARELAKTNSIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDKLPKSAKSFQIKLQYLGWSRALCSTVQQGQQVSLEEDD
        RGNRP+LQ  EL KT SIDY+TEILS RLYGTVCTQ                 VEIEL VPD LP SA+S + K + +G  R                DD
Subjt:  RGNRPSLQARELAKTNSIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDKLPKSAKSFQIKLQYLGWSRALCSTVQQGQQVSLEEDD

Query:  VRWLHAVFRTK
        V WLH VFR K
Subjt:  VRWLHAVFRTK

TYK01784.1 hypothetical protein E5676_scaffold113G00120 [Cucumis melo var. makuwa]2.2e-1349.55Show/hide
Query:  RGNRPSLQARELAKTNSIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDKLPKSAKSFQIKLQYLGWSRALCSTVQQGQQVSLEEDD
        RGNRP+LQ  EL KT SIDY+TEILS RLYGTVCTQ                 VEIEL VPD LP SA+S + K + +G  R                DD
Subjt:  RGNRPSLQARELAKTNSIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDKLPKSAKSFQIKLQYLGWSRALCSTVQQGQQVSLEEDD

Query:  VRWLHAVFRTK
        V WLH VFR K
Subjt:  VRWLHAVFRTK

TYK08952.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.2e-1244.62Show/hide
Query:  RGNRPSLQARELAKTNSIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDKLPKSAKSFQ-------------IKLQYLGWS----RA
        R NR SLQ  EL KT SIDYMTEILS RL GTVCTQ                 VEIELPVPD LP SA+ F+             + ++ L +     RA
Subjt:  RGNRPSLQARELAKTNSIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDKLPKSAKSFQ-------------IKLQYLGWS----RA

Query:  LCSTVQQGQQVSLEEDDVRWLHAVFRTKLA
              +G    +  DDV WLHAVFR K A
Subjt:  LCSTVQQGQQVSLEEDDVRWLHAVFRTKLA

TYK21916.1 hypothetical protein E5676_scaffold494G00570 [Cucumis melo var. makuwa]7.9e-1151.49Show/hide
Query:  RGNRPSLQARELAKTNSIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDKLPKSAKSFQIKLQYLG---WSRALCSTVQQGQQVSLE
        RGNR SLQ  EL  T SIDYMTEILS RLYGTVCT                  VEIELPVPD+LP SA+S      Y      S      V +GQQ SLE
Subjt:  RGNRPSLQARELAKTNSIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDKLPKSAKSFQIKLQYLG---WSRALCSTVQQGQQVSLE

Query:  E
        E
Subjt:  E

TrEMBL top hitse value%identityAlignment
A0A5A7THH5 Uncharacterized protein2.5e-1061.43Show/hide
Query:  RGNRPSLQARELAKTNSIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDKLPKSAKS
        RGNRPSLQ  EL  T SIDYMTEILS RLYGTVCT                  VEIELPVPD+LP SA+S
Subjt:  RGNRPSLQARELAKTNSIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDKLPKSAKS

A0A5A7UCL6 Reverse transcriptase domain-containing protein1.1e-1349.55Show/hide
Query:  RGNRPSLQARELAKTNSIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDKLPKSAKSFQIKLQYLGWSRALCSTVQQGQQVSLEEDD
        RGNRP+LQ  EL KT SIDY+TEILS RLYGTVCTQ                 VEIEL VPD LP SA+S + K + +G  R                DD
Subjt:  RGNRPSLQARELAKTNSIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDKLPKSAKSFQIKLQYLGWSRALCSTVQQGQQVSLEEDD

Query:  VRWLHAVFRTK
        V WLH VFR K
Subjt:  VRWLHAVFRTK

A0A5D3BRJ2 Reverse transcriptase domain-containing protein1.1e-1349.55Show/hide
Query:  RGNRPSLQARELAKTNSIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDKLPKSAKSFQIKLQYLGWSRALCSTVQQGQQVSLEEDD
        RGNRP+LQ  EL KT SIDY+TEILS RLYGTVCTQ                 VEIEL VPD LP SA+S + K + +G  R                DD
Subjt:  RGNRPSLQARELAKTNSIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDKLPKSAKSFQIKLQYLGWSRALCSTVQQGQQVSLEEDD

Query:  VRWLHAVFRTK
        V WLH VFR K
Subjt:  VRWLHAVFRTK

A0A5D3CCC7 DNA/RNA polymerases superfamily protein2.0e-1244.62Show/hide
Query:  RGNRPSLQARELAKTNSIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDKLPKSAKSFQ-------------IKLQYLGWS----RA
        R NR SLQ  EL KT SIDYMTEILS RL GTVCTQ                 VEIELPVPD LP SA+ F+             + ++ L +     RA
Subjt:  RGNRPSLQARELAKTNSIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDKLPKSAKSFQ-------------IKLQYLGWS----RA

Query:  LCSTVQQGQQVSLEEDDVRWLHAVFRTKLA
              +G    +  DDV WLHAVFR K A
Subjt:  LCSTVQQGQQVSLEEDDVRWLHAVFRTKLA

A0A5D3DE96 Uncharacterized protein3.8e-1151.49Show/hide
Query:  RGNRPSLQARELAKTNSIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDKLPKSAKSFQIKLQYLG---WSRALCSTVQQGQQVSLE
        RGNR SLQ  EL  T SIDYMTEILS RLYGTVCT                  VEIELPVPD+LP SA+S      Y      S      V +GQQ SLE
Subjt:  RGNRPSLQARELAKTNSIDYMTEILSPRLYGTVCTQ-----------------VEIELPVPDKLPKSAKSFQIKLQYLG---WSRALCSTVQQGQQVSLE

Query:  E
        E
Subjt:  E

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGAATCTGGGCTAAGAGGAAATAGGCCGAGTCTACAGGCCAGGGAACTAGCCAAGACTAATTCTATTGACTACATGACTGAGATATTGAGCCCGAGGTTATATGG
TACCGTGTGCACACAGGTAGAGATCGAGCTCCCAGTGCCTGATAAACTGCCAAAGTCTGCTAAAAGCTTCCAGATCAAGCTCCAGTACCTTGGGTGGAGTCGTGCATTGT
GTTCAACGGTTCAGCAGGGTCAACAGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCGTCTTTCGGACTAAGCTAGCA
mRNA sequenceShow/hide mRNA sequence
ATGGCAGAATCTGGGCTAAGAGGAAATAGGCCGAGTCTACAGGCCAGGGAACTAGCCAAGACTAATTCTATTGACTACATGACTGAGATATTGAGCCCGAGGTTATATGG
TACCGTGTGCACACAGGTAGAGATCGAGCTCCCAGTGCCTGATAAACTGCCAAAGTCTGCTAAAAGCTTCCAGATCAAGCTCCAGTACCTTGGGTGGAGTCGTGCATTGT
GTTCAACGGTTCAGCAGGGTCAACAGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCGTCTTTCGGACTAAGCTAGCA
Protein sequenceShow/hide protein sequence
MAESGLRGNRPSLQARELAKTNSIDYMTEILSPRLYGTVCTQVEIELPVPDKLPKSAKSFQIKLQYLGWSRALCSTVQQGQQVSLEEDDVRWLHAVFRTKLA