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Spg020687 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg020687
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein, putative, Ty3-gypsy subclass
Genome locationscaffold10:25923048..25924934
RNA-Seq ExpressionSpg020687
SyntenySpg020687
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK16320.1 retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]1.7e-0761.11Show/hide
Query:  YVPSYPPGLILEMGGLLSQRTRVTLTHTDLRIIPNKQEFILSSRLRSSYVGHRM
        YVPSYP  L  EMGGLL QR R  LT+ DLRI+ N+Q+FI+S  LRSSY+G  +
Subjt:  YVPSYPPGLILEMGGLLSQRTRVTLTHTDLRIIPNKQEFILSSRLRSSYVGHRM
TrEMBL top hitse value%identityAlignment
A0A5D3CY86 Retrotransposon protein, putative, Ty3-gypsy subclass8.0e-0861.11Show/hide
Query:  YVPSYPPGLILEMGGLLSQRTRVTLTHTDLRIIPNKQEFILSSRLRSSYVGHRM
        YVPSYP  L  EMGGLL QR R  LT+ DLRI+ N+Q+FI+S  LRSSY+G  +
Subjt:  YVPSYPPGLILEMGGLLSQRTRVTLTHTDLRIIPNKQEFILSSRLRSSYVGHRM
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAATCCTTGAGGCTAAAGCAATTCTTGAGGGTTTAAGATCTTACGTGATTTCGACAGAGGAAGAACGGGTCAACACCCTTTTGTCGTTTGTGGTCGAGTCTGATTC
CAGCAAGGTCATCAATGCCCTAAATCAAGAGGTTGAAGACCATTCGAAAATTTCCTTGATGATCAAAGGCATTAGTGATCTTCTCCCCTCTGCAAATGTCTCATCTTTAT
CCAAATGCTCTAGGATGGAGAACAGGGGAGCTCAGACTTTGAAGCGCGCAACAACTCAGGTAGGAGCGAATTCCATCTTGCAGGACTATGTCCCTAGCTATCCACCCGGT
CTTATCCTTGAAATGGGGGGCTTATTGAGTCAGCGAACTCGGGTCACTCTCACCCATACAGATCTAAGGATAATCCCGAATAAACAGGAGTTCATACTTAGCTCAAGATT
AAGATCGAGTTACGTAGGTCATCGTATGAAATTG
mRNA sequenceShow/hide mRNA sequence
ATGAAAATCCTTGAGGCTAAAGCAATTCTTGAGGGTTTAAGATCTTACGTGATTTCGACAGAGGAAGAACGGGTCAACACCCTTTTGTCGTTTGTGGTCGAGTCTGATTC
CAGCAAGGTCATCAATGCCCTAAATCAAGAGGTTGAAGACCATTCGAAAATTTCCTTGATGATCAAAGGCATTAGTGATCTTCTCCCCTCTGCAAATGTCTCATCTTTAT
CCAAATGCTCTAGGATGGAGAACAGGGGAGCTCAGACTTTGAAGCGCGCAACAACTCAGGTAGGAGCGAATTCCATCTTGCAGGACTATGTCCCTAGCTATCCACCCGGT
CTTATCCTTGAAATGGGGGGCTTATTGAGTCAGCGAACTCGGGTCACTCTCACCCATACAGATCTAAGGATAATCCCGAATAAACAGGAGTTCATACTTAGCTCAAGATT
AAGATCGAGTTACGTAGGTCATCGTATGAAATTG
Protein sequenceShow/hide protein sequence
MKILEAKAILEGLRSYVISTEEERVNTLLSFVVESDSSKVINALNQEVEDHSKISLMIKGISDLLPSANVSSLSKCSRMENRGAQTLKRATTQVGANSILQDYVPSYPPG
LILEMGGLLSQRTRVTLTHTDLRIIPNKQEFILSSRLRSSYVGHRMKL