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Spg020690 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg020690
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein
Genome locationscaffold10:28941212..28942043
RNA-Seq ExpressionSpg020690
SyntenySpg020690
Gene Ontology termsGO:0044260 - cellular macromolecule metabolic process (biological process)
GO:0090304 - nucleic acid metabolic process (biological process)
GO:0016020 - membrane (cellular component)
GO:0000166 - nucleotide binding (molecular function)
GO:0016874 - ligase activity (molecular function)
GO:0043167 - ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056771.1 putative mitochondrial protein [Cucumis melo var. makuwa]8.7e-1636.56Show/hide
Query:  SSLMFLLSNICNLVPLCLDSTNYVLWKI------------------------------------------------------------------------
        +S +FLLSNICNLVP+ LDSTNYVLWK                                                                         
Subjt:  SSLMFLLSNICNLVPLCLDSTNYVLWKI------------------------------------------------------------------------

Query:  ---------KELVDKLVADSVSTNDEEILVYILNDLSEEFSAFWTSIRTQSGSLSLEELHALLIVEEKTITNNQKVEILPTTMVAF
                 K LV KL A S+S  DEEILV+ LN LS  F+AF TSIRT+SG++SLEELH LLI+EE T+     +E +PT M AF
Subjt:  ---------KELVDKLVADSVSTNDEEILVYILNDLSEEFSAFWTSIRTQSGSLSLEELHALLIVEEKTITNNQKVEILPTTMVAF

KAA0059710.1 retrotransposon protein [Cucumis melo var. makuwa]8.2e-1451.49Show/hide
Query:  KIKELVDKLVADSVSTNDEEILVYILNDLSEEFSAFWTSIRTQSGSLSLEELHALLIVEEKTITNNQKVEILPTTMVAFQQALQIVGEEDGSQIKGMRRS
        +IK LVDKLVA SVS  DEEILV+ LN     F+AF T IRT+SG++SLEELH LLI EE T+     +E +PT M AF        +  GS+ +G R +
Subjt:  KIKELVDKLVADSVSTNDEEILVYILNDLSEEFSAFWTSIRTQSGSLSLEELHALLIVEEKTITNNQKVEILPTTMVAFQQALQIVGEEDGSQIKGMRRS

Query:  S
        S
Subjt:  S

KAA0061282.1 putative mitochondrial protein [Cucumis melo var. makuwa]6.3e-1453.06Show/hide
Query:  KIKELVDKLVADSVSTNDEEILVYILNDLSEEFSAFWTSIRTQSGSLSLEELHALLIVEEKTITNNQKVEILPTTMVAFQQALQIVGEEDGSQIKGMR
        +IK LVDKL A SVS  DEEILV+ LN L   F+AF TSIRT+SG++SLEELH LLI EE  I     +E +PT M AF        +  GS+ +G R
Subjt:  KIKELVDKLVADSVSTNDEEILVYILNDLSEEFSAFWTSIRTQSGSLSLEELHALLIVEEKTITNNQKVEILPTTMVAFQQALQIVGEEDGSQIKGMR

KAA0067173.1 retrotransposon protein [Cucumis melo var. makuwa]8.7e-1636.02Show/hide
Query:  SSLMFLLSNICNLVPLCLDSTNYVLWKI------------------------------------------------------------------------
        +S +FLLSNICNLVP+ LDSTNY+LWK                                                                         
Subjt:  SSLMFLLSNICNLVPLCLDSTNYVLWKI------------------------------------------------------------------------

Query:  ---------KELVDKLVADSVSTNDEEILVYILNDLSEEFSAFWTSIRTQSGSLSLEELHALLIVEEKTITNNQKVEILPTTMVAF
                 K L+DKLVA S+S  DEEILV+ LN L   F+AF TSIRT+SG++SLEELH LLI EE T+     +E +PT M AF
Subjt:  ---------KELVDKLVADSVSTNDEEILVYILNDLSEEFSAFWTSIRTQSGSLSLEELHALLIVEEKTITNNQKVEILPTTMVAF

TYJ97594.1 putative mitochondrial protein [Cucumis melo var. makuwa]8.7e-1636.56Show/hide
Query:  SSLMFLLSNICNLVPLCLDSTNYVLWKI------------------------------------------------------------------------
        +S +FLLSNICNLVP+ LDSTNYVLWK                                                                         
Subjt:  SSLMFLLSNICNLVPLCLDSTNYVLWKI------------------------------------------------------------------------

Query:  ---------KELVDKLVADSVSTNDEEILVYILNDLSEEFSAFWTSIRTQSGSLSLEELHALLIVEEKTITNNQKVEILPTTMVAF
                 K LV KL A S+S  DEEILV+ LN LS  F+AF TSIRT+SG++SLEELH LLI+EE T+     +E +PT M AF
Subjt:  ---------KELVDKLVADSVSTNDEEILVYILNDLSEEFSAFWTSIRTQSGSLSLEELHALLIVEEKTITNNQKVEILPTTMVAF

TrEMBL top hitse value%identityAlignment
A0A5A7UTE5 Putative mitochondrial protein4.2e-1636.56Show/hide
Query:  SSLMFLLSNICNLVPLCLDSTNYVLWKI------------------------------------------------------------------------
        +S +FLLSNICNLVP+ LDSTNYVLWK                                                                         
Subjt:  SSLMFLLSNICNLVPLCLDSTNYVLWKI------------------------------------------------------------------------

Query:  ---------KELVDKLVADSVSTNDEEILVYILNDLSEEFSAFWTSIRTQSGSLSLEELHALLIVEEKTITNNQKVEILPTTMVAF
                 K LV KL A S+S  DEEILV+ LN LS  F+AF TSIRT+SG++SLEELH LLI+EE T+     +E +PT M AF
Subjt:  ---------KELVDKLVADSVSTNDEEILVYILNDLSEEFSAFWTSIRTQSGSLSLEELHALLIVEEKTITNNQKVEILPTTMVAF

A0A5A7UZE5 Putative mitochondrial protein3.0e-1453.06Show/hide
Query:  KIKELVDKLVADSVSTNDEEILVYILNDLSEEFSAFWTSIRTQSGSLSLEELHALLIVEEKTITNNQKVEILPTTMVAFQQALQIVGEEDGSQIKGMR
        +IK LVDKL A SVS  DEEILV+ LN L   F+AF TSIRT+SG++SLEELH LLI EE  I     +E +PT M AF        +  GS+ +G R
Subjt:  KIKELVDKLVADSVSTNDEEILVYILNDLSEEFSAFWTSIRTQSGSLSLEELHALLIVEEKTITNNQKVEILPTTMVAFQQALQIVGEEDGSQIKGMR

A0A5A7UZE5 Putative mitochondrial protein3.5e-0281.48Show/hide
Query:  SSLMFLLSNICNLVPLCLDSTNYVLWK
        +S +FLLSNICNLVP+ LDSTNYVLWK
Subjt:  SSLMFLLSNICNLVPLCLDSTNYVLWK

A0A5A7UZE5 Putative mitochondrial protein4.0e-1451.49Show/hide
Query:  KIKELVDKLVADSVSTNDEEILVYILNDLSEEFSAFWTSIRTQSGSLSLEELHALLIVEEKTITNNQKVEILPTTMVAFQQALQIVGEEDGSQIKGMRRS
        +IK LVDKLVA SVS  DEEILV+ LN     F+AF T IRT+SG++SLEELH LLI EE T+     +E +PT M AF        +  GS+ +G R +
Subjt:  KIKELVDKLVADSVSTNDEEILVYILNDLSEEFSAFWTSIRTQSGSLSLEELHALLIVEEKTITNNQKVEILPTTMVAFQQALQIVGEEDGSQIKGMRRS

Query:  S
        S
Subjt:  S

A0A5A7VGG0 Retrotransposon protein4.2e-1636.02Show/hide
Query:  SSLMFLLSNICNLVPLCLDSTNYVLWKI------------------------------------------------------------------------
        +S +FLLSNICNLVP+ LDSTNY+LWK                                                                         
Subjt:  SSLMFLLSNICNLVPLCLDSTNYVLWKI------------------------------------------------------------------------

Query:  ---------KELVDKLVADSVSTNDEEILVYILNDLSEEFSAFWTSIRTQSGSLSLEELHALLIVEEKTITNNQKVEILPTTMVAF
                 K L+DKLVA S+S  DEEILV+ LN L   F+AF TSIRT+SG++SLEELH LLI EE T+     +E +PT M AF
Subjt:  ---------KELVDKLVADSVSTNDEEILVYILNDLSEEFSAFWTSIRTQSGSLSLEELHALLIVEEKTITNNQKVEILPTTMVAF

A0A5D3BEU0 Putative mitochondrial protein4.2e-1636.56Show/hide
Query:  SSLMFLLSNICNLVPLCLDSTNYVLWKI------------------------------------------------------------------------
        +S +FLLSNICNLVP+ LDSTNYVLWK                                                                         
Subjt:  SSLMFLLSNICNLVPLCLDSTNYVLWKI------------------------------------------------------------------------

Query:  ---------KELVDKLVADSVSTNDEEILVYILNDLSEEFSAFWTSIRTQSGSLSLEELHALLIVEEKTITNNQKVEILPTTMVAF
                 K LV KL A S+S  DEEILV+ LN LS  F+AF TSIRT+SG++SLEELH LLI+EE T+     +E +PT M AF
Subjt:  ---------KELVDKLVADSVSTNDEEILVYILNDLSEEFSAFWTSIRTQSGSLSLEELHALLIVEEKTITNNQKVEILPTTMVAF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTCTCTCATGTTCCTGCTATCAAACATATGCAATTTGGTTCCTCTTTGCCTAGACTCCACCAACTATGTACTATGGAAAATCAAAGAACTTGTTGATAAGCTTGT
TGCAGATTCTGTTTCTACTAATGATGAGGAGATATTGGTGTATATATTGAACGACTTATCAGAAGAATTTAGTGCTTTTTGGACCTCTATTCGAACTCAGAGTGGTTCTC
TGTCTCTTGAAGAGCTTCATGCTCTCCTTATTGTTGAAGAAAAGACAATAACAAATAACCAGAAAGTTGAAATTTTGCCGACAACCATGGTTGCCTTCCAACAAGCTTTG
CAAATCGTGGGCGAGGAAGATGGTTCACAAATCAAGGGCATGCGACGCAGTTCTCCAGCCCTAATTTCAATCGAAATCACGGTTTTGGGCCACAAATCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTTCTCTCATGTTCCTGCTATCAAACATATGCAATTTGGTTCCTCTTTGCCTAGACTCCACCAACTATGTACTATGGAAAATCAAAGAACTTGTTGATAAGCTTGT
TGCAGATTCTGTTTCTACTAATGATGAGGAGATATTGGTGTATATATTGAACGACTTATCAGAAGAATTTAGTGCTTTTTGGACCTCTATTCGAACTCAGAGTGGTTCTC
TGTCTCTTGAAGAGCTTCATGCTCTCCTTATTGTTGAAGAAAAGACAATAACAAATAACCAGAAAGTTGAAATTTTGCCGACAACCATGGTTGCCTTCCAACAAGCTTTG
CAAATCGTGGGCGAGGAAGATGGTTCACAAATCAAGGGCATGCGACGCAGTTCTCCAGCCCTAATTTCAATCGAAATCACGGTTTTGGGCCACAAATCGTGA
Protein sequenceShow/hide protein sequence
MSSLMFLLSNICNLVPLCLDSTNYVLWKIKELVDKLVADSVSTNDEEILVYILNDLSEEFSAFWTSIRTQSGSLSLEELHALLIVEEKTITNNQKVEILPTTMVAFQQAL
QIVGEEDGSQIKGMRRSSPALISIEITVLGHKS