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Spg020728 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg020728
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionExonuclease 1
Genome locationscaffold10:27828536..27834010
RNA-Seq ExpressionSpg020728
SyntenySpg020728
Gene Ontology termsGO:0006281 - DNA repair (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0017108 - 5'-flap endonuclease activity (molecular function)
GO:0035312 - 5'-3' exodeoxyribonuclease activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022954760.1 exonuclease 1 isoform X1 [Cucurbita moschata]2.2e-1180.43Show/hide
Query:  TRKENFARVREHETNGNSVAAYECYQKAVDITPLIAHELIQVHRKE
        TRKEN AR  EHETNGNS AAYECYQKAVDITP+IA+ELIQV ++E
Subjt:  TRKENFARVREHETNGNSVAAYECYQKAVDITPLIAHELIQVHRKE

XP_022954763.1 exonuclease 1 isoform X3 [Cucurbita moschata]2.2e-1180.43Show/hide
Query:  TRKENFARVREHETNGNSVAAYECYQKAVDITPLIAHELIQVHRKE
        TRKEN AR  EHETNGNS AAYECYQKAVDITP+IA+ELIQV ++E
Subjt:  TRKENFARVREHETNGNSVAAYECYQKAVDITPLIAHELIQVHRKE

XP_022994762.1 exonuclease 1 isoform X1 [Cucurbita maxima]2.2e-1180.43Show/hide
Query:  TRKENFARVREHETNGNSVAAYECYQKAVDITPLIAHELIQVHRKE
        TRKEN AR  EHETNGNS AAYECYQKAVDITP+IA+ELIQV ++E
Subjt:  TRKENFARVREHETNGNSVAAYECYQKAVDITPLIAHELIQVHRKE

XP_022994764.1 exonuclease 1 isoform X2 [Cucurbita maxima]2.2e-1180.43Show/hide
Query:  TRKENFARVREHETNGNSVAAYECYQKAVDITPLIAHELIQVHRKE
        TRKEN AR  EHETNGNS AAYECYQKAVDITP+IA+ELIQV ++E
Subjt:  TRKENFARVREHETNGNSVAAYECYQKAVDITPLIAHELIQVHRKE

XP_022994765.1 exonuclease 1 isoform X3 [Cucurbita maxima]2.2e-1180.43Show/hide
Query:  TRKENFARVREHETNGNSVAAYECYQKAVDITPLIAHELIQVHRKE
        TRKEN AR  EHETNGNS AAYECYQKAVDITP+IA+ELIQV ++E
Subjt:  TRKENFARVREHETNGNSVAAYECYQKAVDITPLIAHELIQVHRKE

TrEMBL top hitse value%identityAlignment
A0A6J1GRS7 Exonuclease 11.1e-1180.43Show/hide
Query:  TRKENFARVREHETNGNSVAAYECYQKAVDITPLIAHELIQVHRKE
        TRKEN AR  EHETNGNS AAYECYQKAVDITP+IA+ELIQV ++E
Subjt:  TRKENFARVREHETNGNSVAAYECYQKAVDITPLIAHELIQVHRKE

A0A6J1GRT3 Exonuclease 11.1e-1180.43Show/hide
Query:  TRKENFARVREHETNGNSVAAYECYQKAVDITPLIAHELIQVHRKE
        TRKEN AR  EHETNGNS AAYECYQKAVDITP+IA+ELIQV ++E
Subjt:  TRKENFARVREHETNGNSVAAYECYQKAVDITPLIAHELIQVHRKE

A0A6J1K294 Exonuclease 11.1e-1180.43Show/hide
Query:  TRKENFARVREHETNGNSVAAYECYQKAVDITPLIAHELIQVHRKE
        TRKEN AR  EHETNGNS AAYECYQKAVDITP+IA+ELIQV ++E
Subjt:  TRKENFARVREHETNGNSVAAYECYQKAVDITPLIAHELIQVHRKE

A0A6J1K3T0 Exonuclease 11.1e-1180.43Show/hide
Query:  TRKENFARVREHETNGNSVAAYECYQKAVDITPLIAHELIQVHRKE
        TRKEN AR  EHETNGNS AAYECYQKAVDITP+IA+ELIQV ++E
Subjt:  TRKENFARVREHETNGNSVAAYECYQKAVDITPLIAHELIQVHRKE

A0A6J1K615 Exonuclease 11.1e-1180.43Show/hide
Query:  TRKENFARVREHETNGNSVAAYECYQKAVDITPLIAHELIQVHRKE
        TRKEN AR  EHETNGNS AAYECYQKAVDITP+IA+ELIQV ++E
Subjt:  TRKENFARVREHETNGNSVAAYECYQKAVDITPLIAHELIQVHRKE

SwissProt top hitse value%identityAlignment
B8AFI3 Very-long-chain aldehyde decarbonylase GL1-46.2e-0956.6Show/hide
Query:  WSSLLLFATLMFTSEKPRMIHSQIWISYSRYRTAKGTARIVDKGVEFEQVDRE
        W  L +  +L+  S   RMIH+QIWIS SRY+TA+   RIVD+G+EF+QVDRE
Subjt:  WSSLLLFATLMFTSEKPRMIHSQIWISYSRYRTAKGTARIVDKGVEFEQVDRE

F4HVX7 Protein CER1-like 11.8e-0877.78Show/hide
Query:  RMIHSQIWISYSRYRTAKGTARIVDKGVEFEQVDRE
        R++HSQIWIS SR RTAKGT +IVDK +EFEQVDRE
Subjt:  RMIHSQIWISYSRYRTAKGTARIVDKGVEFEQVDRE

Q60GC1 Exonuclease 11.9e-1069.57Show/hide
Query:  TRKENFARVREHETNGNSVAAYECYQKAVDITPLIAHELIQVHRKE
        +RKEN  R +EHE+ GNS AA+ECYQKAVDITP IA ELIQV ++E
Subjt:  TRKENFARVREHETNGNSVAAYECYQKAVDITPLIAHELIQVHRKE

Q6K9F6 Very-long-chain aldehyde decarbonylase GL1-46.2e-0956.6Show/hide
Query:  WSSLLLFATLMFTSEKPRMIHSQIWISYSRYRTAKGTARIVDKGVEFEQVDRE
        W  L +  +L+  S   RMIH+QIWIS SRY+TA+   RIVD+G+EF+QVDRE
Subjt:  WSSLLLFATLMFTSEKPRMIHSQIWISYSRYRTAKGTARIVDKGVEFEQVDRE

Q8L6Z7 Exonuclease 12.7e-1276.09Show/hide
Query:  TRKENFARVREHETNGNSVAAYECYQKAVDITPLIAHELIQVHRKE
        +RKEN AR  EHE NGNS AAYECY KAVDI+P IAHELIQV R+E
Subjt:  TRKENFARVREHETNGNSVAAYECYQKAVDITPLIAHELIQVHRKE

Arabidopsis top hitse value%identityAlignment
AT1G02190.1 Fatty acid hydroxylase superfamily1.3e-0977.78Show/hide
Query:  RMIHSQIWISYSRYRTAKGTARIVDKGVEFEQVDRE
        R++HSQIWIS SR RTAKGT +IVDK +EFEQVDRE
Subjt:  RMIHSQIWISYSRYRTAKGTARIVDKGVEFEQVDRE

AT1G02190.2 Fatty acid hydroxylase superfamily1.3e-0977.78Show/hide
Query:  RMIHSQIWISYSRYRTAKGTARIVDKGVEFEQVDRE
        R++HSQIWIS SR RTAKGT +IVDK +EFEQVDRE
Subjt:  RMIHSQIWISYSRYRTAKGTARIVDKGVEFEQVDRE

AT1G29630.1 5'-3' exonuclease family protein1.9e-1376.09Show/hide
Query:  TRKENFARVREHETNGNSVAAYECYQKAVDITPLIAHELIQVHRKE
        +RKEN AR  EHE NGNS AAYECY KAVDI+P IAHELIQV R+E
Subjt:  TRKENFARVREHETNGNSVAAYECYQKAVDITPLIAHELIQVHRKE

AT1G29630.2 5'-3' exonuclease family protein1.9e-1376.09Show/hide
Query:  TRKENFARVREHETNGNSVAAYECYQKAVDITPLIAHELIQVHRKE
        +RKEN AR  EHE NGNS AAYECY KAVDI+P IAHELIQV R+E
Subjt:  TRKENFARVREHETNGNSVAAYECYQKAVDITPLIAHELIQVHRKE

AT2G37700.1 Fatty acid hydroxylase superfamily1.7e-0972.22Show/hide
Query:  RMIHSQIWISYSRYRTAKGTARIVDKGVEFEQVDRE
        R++HSQIWIS SRY+TAKGT RI++K +EF+QVDRE
Subjt:  RMIHSQIWISYSRYRTAKGTARIVDKGVEFEQVDRE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGCTGTCAGCCATTCGCAGATCGCCGTCCGGTGGTTTGTCGAGCATAATCGGTGGCTATCTCAACCGAGGAGCTATGGAGCTTCATCTCCTTTCTTCTTCTTGCC
TCTCGTCCTTGGCCTCTTCAAAGATGCAATCGTTGGCCCCATTGCAGTCGCCATTCTTGTGATTGGAAACTCCTCTATCATTGTTGGGACAAGAAAAGAAAATTTCGCAC
GTGTAAGAGAACATGAAACGAATGGCAATTCTGTTGCTGCCTACGAGTGCTACCAGAAGGCCGTTGATATAACACCTTTGATCGCCCATGAACTAATTCAAGTACACCGG
AAAGAATGGAGATATCCAAAAAGGGTTGGATTTGGGTGTAGTATCACTAGAGGTGTTAAAGAGAACTTCTTTGATTTGGAGCAATATCCTCTGATTTCAAAACTTACGCA
TCGTTTCCAGGTTGTAAGTTCAATCAAGTGGCTTGAGGATGAGTTGGATCTCAATACTCTCAACAATTCAGGTAAAAGATGTTGCATTCACAGGGCTTTTCAGATTAATG
TTCAAGCCATTTGGTCCTCTTTACTACTCTTTGCCACACTGATGTTTACTTCTGAGAAGCCAAGGATGATCCATAGCCAAATATGGATCTCCTATTCTCGTTATCGAACT
GCCAAAGGCACTGCACGGATCGTCGACAAGGGCGTCGAATTCGAACAAGTTGATAGAGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTGCTGTCAGCCATTCGCAGATCGCCGTCCGGTGGTTTGTCGAGCATAATCGGTGGCTATCTCAACCGAGGAGCTATGGAGCTTCATCTCCTTTCTTCTTCTTGCC
TCTCGTCCTTGGCCTCTTCAAAGATGCAATCGTTGGCCCCATTGCAGTCGCCATTCTTGTGATTGGAAACTCCTCTATCATTGTTGGGACAAGAAAAGAAAATTTCGCAC
GTGTAAGAGAACATGAAACGAATGGCAATTCTGTTGCTGCCTACGAGTGCTACCAGAAGGCCGTTGATATAACACCTTTGATCGCCCATGAACTAATTCAAGTACACCGG
AAAGAATGGAGATATCCAAAAAGGGTTGGATTTGGGTGTAGTATCACTAGAGGTGTTAAAGAGAACTTCTTTGATTTGGAGCAATATCCTCTGATTTCAAAACTTACGCA
TCGTTTCCAGGTTGTAAGTTCAATCAAGTGGCTTGAGGATGAGTTGGATCTCAATACTCTCAACAATTCAGGTAAAAGATGTTGCATTCACAGGGCTTTTCAGATTAATG
TTCAAGCCATTTGGTCCTCTTTACTACTCTTTGCCACACTGATGTTTACTTCTGAGAAGCCAAGGATGATCCATAGCCAAATATGGATCTCCTATTCTCGTTATCGAACT
GCCAAAGGCACTGCACGGATCGTCGACAAGGGCGTCGAATTCGAACAAGTTGATAGAGAATGA
Protein sequenceShow/hide protein sequence
MVAVSHSQIAVRWFVEHNRWLSQPRSYGASSPFFFLPLVLGLFKDAIVGPIAVAILVIGNSSIIVGTRKENFARVREHETNGNSVAAYECYQKAVDITPLIAHELIQVHR
KEWRYPKRVGFGCSITRGVKENFFDLEQYPLISKLTHRFQVVSSIKWLEDELDLNTLNNSGKRCCIHRAFQINVQAIWSSLLLFATLMFTSEKPRMIHSQIWISYSRYRT
AKGTARIVDKGVEFEQVDRE