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Spg020729 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg020729
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold10:29578745..29581368
RNA-Seq ExpressionSpg020729
SyntenySpg020729
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037515.1 uncharacterized protein E6C27_scaffold277G001260 [Cucumis melo var. makuwa]4.6e-1050.54Show/hide
Query:  DRPRGNRSSLQTRELAKT-----------------VEIELLVPDTLPTSAERSRSSSSSTFQEGQWVSLEEDDVHWLHAIFRTKLAGGPGGGI
        + PRGNR SLQT EL KT                 VEIEL V DTLP SAE S S+S S         + EDDV WLH +FR K AGGPGGG+
Subjt:  DRPRGNRSSLQTRELAKT-----------------VEIELLVPDTLPTSAERSRSSSSSTFQEGQWVSLEEDDVHWLHAIFRTKLAGGPGGGI

KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.2e-1142.86Show/hide
Query:  PRGNRSSLQTRELAKT-----------------VEIELLVPDTLPTSAERSRSSSSSTFQ----------EGQWVSLEEDDVHWLHAIFRTKLAGGPGGG
        PRGNR SLQT EL KT                 VEIEL +PDTLPTSAE S S+SS+  +           G    +  DDV WLHA+FR K  GGPGGG
Subjt:  PRGNRSSLQTRELAKT-----------------VEIELLVPDTLPTSAERSRSSSSSTFQ----------EGQWVSLEEDDVHWLHAIFRTKLAGGPGGG

Query:  I-----NRERRDAVTFCRLIKEGKSE
        +     +R RR      +   +G+SE
Subjt:  I-----NRERRDAVTFCRLIKEGKSE

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]2.5e-1140.8Show/hide
Query:  PRGNRSSLQTRELAKTVEIELLVPDTLPTSAERSRSSSSSTFQ--------------------------EGQWVSLEEDDVHWLHAIFRTKLAGGPGGGI
        PRGNR +L T +L KTVEIEL VPDTLPTSAE S+S+SS+  +                          EG    +  DD+ WLHA+F  K AG PGGG+
Subjt:  PRGNRSSLQTRELAKTVEIELLVPDTLPTSAERSRSSSSSTFQ--------------------------EGQWVSLEEDDVHWLHAIFRTKLAGGPGGGI

Query:  -----NRERRDAVTFCRLIKEGKSE
             +R RR      +   +G+SE
Subjt:  -----NRERRDAVTFCRLIKEGKSE

KAA0060199.1 uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa]1.7e-1244.85Show/hide
Query:  SNARFWLFDRPRGNRSSLQTRELAKT-----------------VEIELLVPDTLPTSAERSRSSSSSTFQEGQWVSLEEDDVHWLHAIFRTKLAGGPGGG
        SN + +L  RPRGNR SLQT +L KT                 VEIEL VPDTLPTSAE   S+S ST        +  DDV WLHA+FR K AGGPGGG
Subjt:  SNARFWLFDRPRGNRSSLQTRELAKT-----------------VEIELLVPDTLPTSAERSRSSSSSTFQEGQWVSLEEDDVHWLHAIFRTKLAGGPGGG

Query:  INRERRDAVTFCRLIKEGKSEHRDALKLESRPWSTF
                VTF   I +G ++  D   ++   W TF
Subjt:  INRERRDAVTFCRLIKEGKSEHRDALKLESRPWSTF

TYK17971.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.2e-1142.86Show/hide
Query:  PRGNRSSLQTRELAKT-----------------VEIELLVPDTLPTSAERSRSSSSSTFQ----------EGQWVSLEEDDVHWLHAIFRTKLAGGPGGG
        PRGNR SLQT EL KT                 VEIEL +PDTLPTSAE S S+SS+  +           G    +  DDV WLHA+FR K  GGPGGG
Subjt:  PRGNRSSLQTRELAKT-----------------VEIELLVPDTLPTSAERSRSSSSSTFQ----------EGQWVSLEEDDVHWLHAIFRTKLAGGPGGG

Query:  I-----NRERRDAVTFCRLIKEGKSE
        +     +R RR      +   +G+SE
Subjt:  I-----NRERRDAVTFCRLIKEGKSE

TrEMBL top hitse value%identityAlignment
A0A5A7TKT0 Reverse transcriptase1.6e-1142.86Show/hide
Query:  PRGNRSSLQTRELAKT-----------------VEIELLVPDTLPTSAERSRSSSSSTFQ----------EGQWVSLEEDDVHWLHAIFRTKLAGGPGGG
        PRGNR SLQT EL KT                 VEIEL +PDTLPTSAE S S+SS+  +           G    +  DDV WLHA+FR K  GGPGGG
Subjt:  PRGNRSSLQTRELAKT-----------------VEIELLVPDTLPTSAERSRSSSSSTFQ----------EGQWVSLEEDDVHWLHAIFRTKLAGGPGGG

Query:  I-----NRERRDAVTFCRLIKEGKSE
        +     +R RR      +   +G+SE
Subjt:  I-----NRERRDAVTFCRLIKEGKSE

A0A5A7UAH6 CCHC-type domain-containing protein1.2e-1140.8Show/hide
Query:  PRGNRSSLQTRELAKTVEIELLVPDTLPTSAERSRSSSSSTFQ--------------------------EGQWVSLEEDDVHWLHAIFRTKLAGGPGGGI
        PRGNR +L T +L KTVEIEL VPDTLPTSAE S+S+SS+  +                          EG    +  DD+ WLHA+F  K AG PGGG+
Subjt:  PRGNRSSLQTRELAKTVEIELLVPDTLPTSAERSRSSSSSTFQ--------------------------EGQWVSLEEDDVHWLHAIFRTKLAGGPGGGI

Query:  -----NRERRDAVTFCRLIKEGKSE
             +R RR      +   +G+SE
Subjt:  -----NRERRDAVTFCRLIKEGKSE

A0A5A7VIY9 Uncharacterized protein2.2e-1042.02Show/hide
Query:  DRPRGNRSSLQTRELAKT-----------------VEIELLVPDTLPTSAERSRSSSSSTFQ--------------------------EGQWVSLEEDDV
        + PRGNRSSLQT EL KT                 VEIEL VPDTLPTSAE   S+SS+  +                          EG    +  DDV
Subjt:  DRPRGNRSSLQTRELAKT-----------------VEIELLVPDTLPTSAERSRSSSSSTFQ--------------------------EGQWVSLEEDDV

Query:  HWLHAIFRTKLAGGPGGGI
         WLH +FR K+AGGPGGG+
Subjt:  HWLHAIFRTKLAGGPGGGI

A0A5D3BAD1 Retrotrans_gag domain-containing protein8.3e-1344.85Show/hide
Query:  SNARFWLFDRPRGNRSSLQTRELAKT-----------------VEIELLVPDTLPTSAERSRSSSSSTFQEGQWVSLEEDDVHWLHAIFRTKLAGGPGGG
        SN + +L  RPRGNR SLQT +L KT                 VEIEL VPDTLPTSAE   S+S ST        +  DDV WLHA+FR K AGGPGGG
Subjt:  SNARFWLFDRPRGNRSSLQTRELAKT-----------------VEIELLVPDTLPTSAERSRSSSSSTFQEGQWVSLEEDDVHWLHAIFRTKLAGGPGGG

Query:  INRERRDAVTFCRLIKEGKSEHRDALKLESRPWSTF
                VTF   I +G ++  D   ++   W TF
Subjt:  INRERRDAVTFCRLIKEGKSEHRDALKLESRPWSTF

A0A5D3D150 Reverse transcriptase1.6e-1142.86Show/hide
Query:  PRGNRSSLQTRELAKT-----------------VEIELLVPDTLPTSAERSRSSSSSTFQ----------EGQWVSLEEDDVHWLHAIFRTKLAGGPGGG
        PRGNR SLQT EL KT                 VEIEL +PDTLPTSAE S S+SS+  +           G    +  DDV WLHA+FR K  GGPGGG
Subjt:  PRGNRSSLQTRELAKT-----------------VEIELLVPDTLPTSAERSRSSSSSTFQ----------EGQWVSLEEDDVHWLHAIFRTKLAGGPGGG

Query:  I-----NRERRDAVTFCRLIKEGKSE
        +     +R RR      +   +G+SE
Subjt:  I-----NRERRDAVTFCRLIKEGKSE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGATAAGACTACCTTTGGTTCTAATGCTCGGTTTTGGTTGTTTGACAGGCCAAGAGGAAATAGGTCGAGTCTACAGACTAGGGAACTAGCTAAGACAGTAGAGAT
CGAGCTCCTAGTGCCTGATACACTGCCAACGTCTGCTGAACGTTCCAGATCAAGCTCCAGTTCAACGTTTCAGGAGGGTCAATGGGTATCGTTAGAGGAGGACGATGTCC
ATTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCCGGGAGGGGGAATTAACCGAGAGCGTCGAGACGCTGTGACCTTTTGCCGCCTGATCAAAGAAGGAAAA
TCTGAGCATCGAGACGCTCTGAAATTAGAGTCTCGACCCTGGTCCACTTTTTGCACTAATCAAACAGCTTCCAACTTCGATTCTCTTCGTTTCTTTGGTCTCTTTTCATG
TCCCGAACACCCGATCATTCCCAATTTCTCAATTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAGATAAGACTACCTTTGGTTCTAATGCTCGGTTTTGGTTGTTTGACAGGCCAAGAGGAAATAGGTCGAGTCTACAGACTAGGGAACTAGCTAAGACAGTAGAGAT
CGAGCTCCTAGTGCCTGATACACTGCCAACGTCTGCTGAACGTTCCAGATCAAGCTCCAGTTCAACGTTTCAGGAGGGTCAATGGGTATCGTTAGAGGAGGACGATGTCC
ATTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCCGGGAGGGGGAATTAACCGAGAGCGTCGAGACGCTGTGACCTTTTGCCGCCTGATCAAAGAAGGAAAA
TCTGAGCATCGAGACGCTCTGAAATTAGAGTCTCGACCCTGGTCCACTTTTTGCACTAATCAAACAGCTTCCAACTTCGATTCTCTTCGTTTCTTTGGTCTCTTTTCATG
TCCCGAACACCCGATCATTCCCAATTTCTCAATTTAG
Protein sequenceShow/hide protein sequence
MEDKTTFGSNARFWLFDRPRGNRSSLQTRELAKTVEIELLVPDTLPTSAERSRSSSSSTFQEGQWVSLEEDDVHWLHAIFRTKLAGGPGGGINRERRDAVTFCRLIKEGK
SEHRDALKLESRPWSTFCTNQTASNFDSLRFFGLFSCPEHPIIPNFSI