; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg020735 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg020735
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Genome locationscaffold10:26189765..26192644
RNA-Seq ExpressionSpg020735
SyntenySpg020735
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.0e-2256Show/hide
Query:  EERMVVMQEHINTLMKAIEEKDSQIEHLKKEVDNSKKGEQRTSVFNRIKPSTTRPSVFQRMSMAASKEENQCSASTFTRPSAFQRLSVSTSKKSRSSTSV
        EE + V   H  +++K     DS      +EVDNS + +QRTSVF+RIKP TTR SVFQR+SMA  +EENQC  ST+ R SAF+RLS+STSKK R STS 
Subjt:  EERMVVMQEHINTLMKAIEEKDSQIEHLKKEVDNSKKGEQRTSVFNRIKPSTTRPSVFQRMSMAASKEENQCSASTFTRPSAFQRLSVSTSKKSRSSTSV

Query:  FDRLKVTDDQPQRKIDNLEVKMFNE
        FDRLK+T+DQ QR++ +L+ K F+E
Subjt:  FDRLKVTDDQPQRKIDNLEVKMFNE

KAA0052018.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.2e-2155.2Show/hide
Query:  EERMVVMQEHINTLMKAIEEKDSQIEHLKKEVDNSKKGEQRTSVFNRIKPSTTRPSVFQRMSMAASKEENQCSASTFTRPSAFQRLSVSTSKKSRSSTSV
        EE + V   H  ++++     DS      +E+DNS + +QRTSVF+RIKP TTR SVFQR+SMA  KEENQC  ST+ R SAF+RLS+STSKK R STS 
Subjt:  EERMVVMQEHINTLMKAIEEKDSQIEHLKKEVDNSKKGEQRTSVFNRIKPSTTRPSVFQRMSMAASKEENQCSASTFTRPSAFQRLSVSTSKKSRSSTSV

Query:  FDRLKVTDDQPQRKIDNLEVKMFNE
        FDRLK+T+DQ QR++  L+ K F+E
Subjt:  FDRLKVTDDQPQRKIDNLEVKMFNE

KAA0056218.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.5e-2155.2Show/hide
Query:  EERMVVMQEHINTLMKAIEEKDSQIEHLKKEVDNSKKGEQRTSVFNRIKPSTTRPSVFQRMSMAASKEENQCSASTFTRPSAFQRLSVSTSKKSRSSTSV
        EE + V   H  ++++     DS      +E+DNS + +QRTSVF+RIKP TTR SVFQR+SMA  KEEN+C  ST+TR SAF+RLS+STSKK R ST V
Subjt:  EERMVVMQEHINTLMKAIEEKDSQIEHLKKEVDNSKKGEQRTSVFNRIKPSTTRPSVFQRMSMAASKEENQCSASTFTRPSAFQRLSVSTSKKSRSSTSV

Query:  FDRLKVTDDQPQRKIDNLEVKMFNE
        FDRLK+T+DQ QR++  L+ K F+E
Subjt:  FDRLKVTDDQPQRKIDNLEVKMFNE

KAA0059024.1 retrotransposon gag protein [Cucumis melo var. makuwa]8.8e-2252.27Show/hide
Query:  KEVDNSKKGEQRTSVFNRIKPSTTRPSVFQRMSMAASKEENQCSASTFTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTDDQPQRKIDNLEVKMFNEFSVP
        KEV+NS K  QRTS+F+RIKPSTTR SVFQR+SMA  +EENQC    +TR S F+RLS+STSKK R STS FDRLK+T+DQ QR++ +L+ K F E    
Subjt:  KEVDNSKKGEQRTSVFNRIKPSTTRPSVFQRMSMAASKEENQCSASTFTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTDDQPQRKIDNLEVKMFNEFSVP

Query:  FTLSSLLLLLSKFEGSYDVRYCVVPSSSSSKV
                     E  YD  +  VPS    K+
Subjt:  FTLSSLLLLLSKFEGSYDVRYCVVPSSSSSKV

TYK23553.1 hypothetical protein E5676_scaffold500G00600 [Cucumis melo var. makuwa]1.5e-2152.38Show/hide
Query:  MQEHINTLMK-------AIEEKDSQIEHLKKEVDNSKKGEQRTSVFNRIKPSTTRPSVFQRMSMAASKEENQCSASTFTRPSAFQRLSVSTSKKSRSSTS
        +++H+  +++       +I E D+  ++  +EVDNS K +QRTSVF+RIKP TTR SVF+R+SM   +EENQC  ST+ R SAF+RLS+STSKK R STS
Subjt:  MQEHINTLMK-------AIEEKDSQIEHLKKEVDNSKKGEQRTSVFNRIKPSTTRPSVFQRMSMAASKEENQCSASTFTRPSAFQRLSVSTSKKSRSSTS

Query:  VFDRLKVTDDQPQRKIDNLEVKMFNE
         FDRLK+T+DQ QR++ +L+ K F+E
Subjt:  VFDRLKVTDDQPQRKIDNLEVKMFNE

TrEMBL top hitse value%identityAlignment
A0A5A7TQ06 Retrotransposon gag protein1.9e-2256Show/hide
Query:  EERMVVMQEHINTLMKAIEEKDSQIEHLKKEVDNSKKGEQRTSVFNRIKPSTTRPSVFQRMSMAASKEENQCSASTFTRPSAFQRLSVSTSKKSRSSTSV
        EE + V   H  +++K     DS      +EVDNS + +QRTSVF+RIKP TTR SVFQR+SMA  +EENQC  ST+ R SAF+RLS+STSKK R STS 
Subjt:  EERMVVMQEHINTLMKAIEEKDSQIEHLKKEVDNSKKGEQRTSVFNRIKPSTTRPSVFQRMSMAASKEENQCSASTFTRPSAFQRLSVSTSKKSRSSTSV

Query:  FDRLKVTDDQPQRKIDNLEVKMFNE
        FDRLK+T+DQ QR++ +L+ K F+E
Subjt:  FDRLKVTDDQPQRKIDNLEVKMFNE

A0A5A7U9V3 Retrotransposon gag protein5.6e-2255.2Show/hide
Query:  EERMVVMQEHINTLMKAIEEKDSQIEHLKKEVDNSKKGEQRTSVFNRIKPSTTRPSVFQRMSMAASKEENQCSASTFTRPSAFQRLSVSTSKKSRSSTSV
        EE + V   H  ++++     DS      +E+DNS + +QRTSVF+RIKP TTR SVFQR+SMA  KEENQC  ST+ R SAF+RLS+STSKK R STS 
Subjt:  EERMVVMQEHINTLMKAIEEKDSQIEHLKKEVDNSKKGEQRTSVFNRIKPSTTRPSVFQRMSMAASKEENQCSASTFTRPSAFQRLSVSTSKKSRSSTSV

Query:  FDRLKVTDDQPQRKIDNLEVKMFNE
        FDRLK+T+DQ QR++  L+ K F+E
Subjt:  FDRLKVTDDQPQRKIDNLEVKMFNE

A0A5A7UM99 Ty3-gypsy retrotransposon protein7.3e-2255.2Show/hide
Query:  EERMVVMQEHINTLMKAIEEKDSQIEHLKKEVDNSKKGEQRTSVFNRIKPSTTRPSVFQRMSMAASKEENQCSASTFTRPSAFQRLSVSTSKKSRSSTSV
        EE + V   H  ++++     DS      +E+DNS + +QRTSVF+RIKP TTR SVFQR+SMA  KEEN+C  ST+TR SAF+RLS+STSKK R ST V
Subjt:  EERMVVMQEHINTLMKAIEEKDSQIEHLKKEVDNSKKGEQRTSVFNRIKPSTTRPSVFQRMSMAASKEENQCSASTFTRPSAFQRLSVSTSKKSRSSTSV

Query:  FDRLKVTDDQPQRKIDNLEVKMFNE
        FDRLK+T+DQ QR++  L+ K F+E
Subjt:  FDRLKVTDDQPQRKIDNLEVKMFNE

A0A5A7UV73 Retrotransposon gag protein4.3e-2252.27Show/hide
Query:  KEVDNSKKGEQRTSVFNRIKPSTTRPSVFQRMSMAASKEENQCSASTFTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTDDQPQRKIDNLEVKMFNEFSVP
        KEV+NS K  QRTS+F+RIKPSTTR SVFQR+SMA  +EENQC    +TR S F+RLS+STSKK R STS FDRLK+T+DQ QR++ +L+ K F E    
Subjt:  KEVDNSKKGEQRTSVFNRIKPSTTRPSVFQRMSMAASKEENQCSASTFTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTDDQPQRKIDNLEVKMFNEFSVP

Query:  FTLSSLLLLLSKFEGSYDVRYCVVPSSSSSKV
                     E  YD  +  VPS    K+
Subjt:  FTLSSLLLLLSKFEGSYDVRYCVVPSSSSSKV

A0A5D3DIY2 Uncharacterized protein7.3e-2252.38Show/hide
Query:  MQEHINTLMK-------AIEEKDSQIEHLKKEVDNSKKGEQRTSVFNRIKPSTTRPSVFQRMSMAASKEENQCSASTFTRPSAFQRLSVSTSKKSRSSTS
        +++H+  +++       +I E D+  ++  +EVDNS K +QRTSVF+RIKP TTR SVF+R+SM   +EENQC  ST+ R SAF+RLS+STSKK R STS
Subjt:  MQEHINTLMK-------AIEEKDSQIEHLKKEVDNSKKGEQRTSVFNRIKPSTTRPSVFQRMSMAASKEENQCSASTFTRPSAFQRLSVSTSKKSRSSTS

Query:  VFDRLKVTDDQPQRKIDNLEVKMFNE
         FDRLK+T+DQ QR++ +L+ K F+E
Subjt:  VFDRLKVTDDQPQRKIDNLEVKMFNE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTCTATTGCCCATTGTTACTTCAATGAACTGAGGTTGCAAGAAGATAAAGCTTCTATCATTGCAAGCGAGGAAACAACATTGCAGGGGGCATGTACCAATGACAA
GTTTCTTGTTAAGTATAACCCTTTGTTTGAACCTGATTCTGACGTAGTGACTGTTATGATGACTGAGACAAGAACAATGGAAGAAAGAATGGTTGTGATGCAGGAGCACA
TCAACACCTTAATGAAGGCGATTGAAGAAAAAGATTCTCAAATTGAGCACCTAAAGAAAGAAGTTGACAATTCCAAGAAGGGTGAACAAAGGACTTCTGTCTTCAATCGC
ATCAAGCCTTCAACTACTCGTCCTTCTGTATTCCAAAGAATGAGTATGGCCGCATCAAAAGAAGAAAATCAATGTTCGGCGTCCACCTTCACTCGACCTTCAGCTTTCCA
AAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAGATGATCAACCTCAAAGAAAGATAGATAACTTAGAGGTGA
AAATGTTCAATGAATTCAGTGTTCCATTCACCCTAAGTTCGTTGCTCCTTCTTCTCTCCAAGTTCGAGGGTTCTTACGATGTACGCTACTGTGTTGTTCCCTCTTCTTCA
AGTTCGAAGGTTCTTACGATGTACGCTCCAAGTTCGAGGGTTCTTACGATGTACGCTACTGTGTTGTTCCCTCTTCTTCAAGTTCGAAGGTTCTCACGCGCTTCGCTACA
ATTCCTTCTCTCCAAGTTCGAAGGTTCTCACGTTGCTTCGCTAGCCAAGTTCGAAGGTTCTCATGCACTTCGCTCTCCAAGTTCGAAAGGTCTCACGCGCTTTGCTGTAG
TTCATTCTCTTCAAGTTCACGCACTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCACGGCTTCGCTGCAGTTCCTCTCTCCAAGTTCGAAGGTTCTCACGCGT
TTCGTTGCAGTTTCTTCCCTCCAAGTTGCAGTTCTTTCTCTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGTTCTATTGCCCATTGTTACTTCAATGAACTGAGGTTGCAAGAAGATAAAGCTTCTATCATTGCAAGCGAGGAAACAACATTGCAGGGGGCATGTACCAATGACAA
GTTTCTTGTTAAGTATAACCCTTTGTTTGAACCTGATTCTGACGTAGTGACTGTTATGATGACTGAGACAAGAACAATGGAAGAAAGAATGGTTGTGATGCAGGAGCACA
TCAACACCTTAATGAAGGCGATTGAAGAAAAAGATTCTCAAATTGAGCACCTAAAGAAAGAAGTTGACAATTCCAAGAAGGGTGAACAAAGGACTTCTGTCTTCAATCGC
ATCAAGCCTTCAACTACTCGTCCTTCTGTATTCCAAAGAATGAGTATGGCCGCATCAAAAGAAGAAAATCAATGTTCGGCGTCCACCTTCACTCGACCTTCAGCTTTCCA
AAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAGATGATCAACCTCAAAGAAAGATAGATAACTTAGAGGTGA
AAATGTTCAATGAATTCAGTGTTCCATTCACCCTAAGTTCGTTGCTCCTTCTTCTCTCCAAGTTCGAGGGTTCTTACGATGTACGCTACTGTGTTGTTCCCTCTTCTTCA
AGTTCGAAGGTTCTTACGATGTACGCTCCAAGTTCGAGGGTTCTTACGATGTACGCTACTGTGTTGTTCCCTCTTCTTCAAGTTCGAAGGTTCTCACGCGCTTCGCTACA
ATTCCTTCTCTCCAAGTTCGAAGGTTCTCACGTTGCTTCGCTAGCCAAGTTCGAAGGTTCTCATGCACTTCGCTCTCCAAGTTCGAAAGGTCTCACGCGCTTTGCTGTAG
TTCATTCTCTTCAAGTTCACGCACTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCACGGCTTCGCTGCAGTTCCTCTCTCCAAGTTCGAAGGTTCTCACGCGT
TTCGTTGCAGTTTCTTCCCTCCAAGTTGCAGTTCTTTCTCTCTAA
Protein sequenceShow/hide protein sequence
MGSIAHCYFNELRLQEDKASIIASEETTLQGACTNDKFLVKYNPLFEPDSDVVTVMMTETRTMEERMVVMQEHINTLMKAIEEKDSQIEHLKKEVDNSKKGEQRTSVFNR
IKPSTTRPSVFQRMSMAASKEENQCSASTFTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTDDQPQRKIDNLEVKMFNEFSVPFTLSSLLLLLSKFEGSYDVRYCVVPSSS
SSKVLTMYAPSSRVLTMYATVLFPLLQVRRFSRASLQFLLSKFEGSHVASLAKFEGSHALRSPSSKGLTRFAVVHSLQVHALRCSSFSPSSKVLTASLQFLSPSSKVLTR
FVAVSSLQVAVLSL