CuGenDBv2

Gene ID	Spg020749
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	40S ribosomal protein S13
Genome location	scaffold10:26098308..26100099
RNA-Seq Expression	Spg020749
Synteny	Spg020749
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005730 - nucleolus (cellular component) GO:0022627 - cytosolic small ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0070181 - small ribosomal subunit rRNA binding (molecular function)
InterPro domains	IPR000589 - Ribosomal protein S15 IPR009068 - S15/NS1, RNA-binding IPR012606 - Ribosomal protein S13/S15, N-terminal IPR023029 - Ribosomal protein S15P

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_021687108.1 40S ribosomal protein S13-like [Hevea brasiliensis]

1.5e-42

78.69

Show/hide

Query:  KAPPP--FSLAPEMVAENICKFAKKGLTSSQIGVILRDSHRIAQVKSLTGSKILCILKAHAL--EIPEDLYHLIKKVVSIRKHLERNKKDKDSKFRLILV
        K  PP    ++P+ V ENICKFAKKGLT SQIGVILRDSH IAQVKS+TGSKIL ILKAH L  EIPEDLYHLIKK V+IRKHLERN+KDKDSKFRLILV
Subjt:  KAPPP--FSLAPEMVAENICKFAKKGLTSSQIGVILRDSHRIAQVKSLTGSKILCILKAHAL--EIPEDLYHLIKKVVSIRKHLERNKKDKDSKFRLILV

Query:  ESKIHRLTQYYKKAKKLPPIWK
        ES+IHRL +YYKK KKLPP+WK
Subjt:  ESKIHRLTQYYKKAKKLPPIWK

XP_021687881.1 40S ribosomal protein S13-like [Hevea brasiliensis]

1.5e-42

78.69

Show/hide

Query:  KAPPP--FSLAPEMVAENICKFAKKGLTSSQIGVILRDSHRIAQVKSLTGSKILCILKAHAL--EIPEDLYHLIKKVVSIRKHLERNKKDKDSKFRLILV
        K  PP    ++P+ V ENICKFAKKGLT SQIGVILRDSH IAQVKS+TGSKIL ILKAH L  EIPEDLYHLIKK V+IRKHLERN+KDKDSKFRLILV
Subjt:  KAPPP--FSLAPEMVAENICKFAKKGLTSSQIGVILRDSHRIAQVKSLTGSKILCILKAHAL--EIPEDLYHLIKKVVSIRKHLERNKKDKDSKFRLILV

Query:  ESKIHRLTQYYKKAKKLPPIWK
        ES+IHRL +YYKK KKLPP+WK
Subjt:  ESKIHRLTQYYKKAKKLPPIWK

XP_022143980.1 40S ribosomal protein S13-like [Momordica charantia]

1.5e-42

79.51

Show/hide

Query:  KAPPP--FSLAPEMVAENICKFAKKGLTSSQIGVILRDSHRIAQVKSLTGSKILCILKAHAL--EIPEDLYHLIKKVVSIRKHLERNKKDKDSKFRLILV
        K  PP    ++ + VAENICKFAKKGLT SQIGVILRDSH IAQVKS+TGSKIL ILKAH L  EIPEDLYHLIKK VSIRKHLERN+KDKDSKFRLILV
Subjt:  KAPPP--FSLAPEMVAENICKFAKKGLTSSQIGVILRDSHRIAQVKSLTGSKILCILKAHAL--EIPEDLYHLIKKVVSIRKHLERNKKDKDSKFRLILV

Query:  ESKIHRLTQYYKKAKKLPPIWK
        ES+IHRL +YYKK KKLPP+WK
Subjt:  ESKIHRLTQYYKKAKKLPPIWK

XP_023921946.1 40S ribosomal protein S13 isoform X1 [Quercus suber]

8.7e-43

78.69

Show/hide

Query:  KAPPP--FSLAPEMVAENICKFAKKGLTSSQIGVILRDSHRIAQVKSLTGSKILCILKAHAL--EIPEDLYHLIKKVVSIRKHLERNKKDKDSKFRLILV
        K  PP    ++P+ V ENICKFAKKGLT SQIGVILRDSH IAQVKS+TGSKIL +LKAH L  EIPEDLYHLIKK VSIRKHLERN+KDKDSKFRLILV
Subjt:  KAPPP--FSLAPEMVAENICKFAKKGLTSSQIGVILRDSHRIAQVKSLTGSKILCILKAHAL--EIPEDLYHLIKKVVSIRKHLERNKKDKDSKFRLILV

Query:  ESKIHRLTQYYKKAKKLPPIWK
        ES+IHRL +YYKK KKLPP+WK
Subjt:  ESKIHRLTQYYKKAKKLPPIWK

XP_038906798.1 40S ribosomal protein S13 [Benincasa hispida]

1.5e-42

79.51

Show/hide

Query:  KAPPP--FSLAPEMVAENICKFAKKGLTSSQIGVILRDSHRIAQVKSLTGSKILCILKAHAL--EIPEDLYHLIKKVVSIRKHLERNKKDKDSKFRLILV
        K  PP    ++ + VAENICKFAKKGLT SQIGVILRDSH IAQVKS+TGSKIL ILKAH L  EIPEDLYHLIKK VSIRKHLERN+KDKDSKFRLILV
Subjt:  KAPPP--FSLAPEMVAENICKFAKKGLTSSQIGVILRDSHRIAQVKSLTGSKILCILKAHAL--EIPEDLYHLIKKVVSIRKHLERNKKDKDSKFRLILV

Query:  ESKIHRLTQYYKKAKKLPPIWK
        ES+IHRL +YYKK KKLPP+WK
Subjt:  ESKIHRLTQYYKKAKKLPPIWK

TrEMBL top hits

e value

%identity

Alignment

A0A2N9HS23 Ribosomal_S13_N domain-containing protein

5.5e-43

78.99

Show/hide

Query:  APPPFSLAPEMVAENICKFAKKGLTSSQIGVILRDSHRIAQVKSLTGSKILCILKAHAL--EIPEDLYHLIKKVVSIRKHLERNKKDKDSKFRLILVESK
        +P    ++P+ V ENICKFAKKGLT SQIGVILRDSH IAQVKS+TGSKIL +LKAH L  EIPEDLYHLIKK VSIRKHLERN+KDKDSKFRLILVES+
Subjt:  APPPFSLAPEMVAENICKFAKKGLTSSQIGVILRDSHRIAQVKSLTGSKILCILKAHAL--EIPEDLYHLIKKVVSIRKHLERNKKDKDSKFRLILVESK

Query:  IHRLTQYYKKAKKLPPIWK
        IHRL +YYKK KKLPP+WK
Subjt:  IHRLTQYYKKAKKLPPIWK

A0A2N9IT03 Ribosomal_S13_N domain-containing protein

5.5e-43

78.99

Show/hide

Query:  APPPFSLAPEMVAENICKFAKKGLTSSQIGVILRDSHRIAQVKSLTGSKILCILKAHAL--EIPEDLYHLIKKVVSIRKHLERNKKDKDSKFRLILVESK
        +P    ++P+ V ENICKFAKKGLT SQIGVILRDSH IAQVKS+TGSKIL +LKAH L  EIPEDLYHLIKK VSIRKHLERN+KDKDSKFRLILVES+
Subjt:  APPPFSLAPEMVAENICKFAKKGLTSSQIGVILRDSHRIAQVKSLTGSKILCILKAHAL--EIPEDLYHLIKKVVSIRKHLERNKKDKDSKFRLILVESK

Query:  IHRLTQYYKKAKKLPPIWK
        IHRL +YYKK KKLPP+WK
Subjt:  IHRLTQYYKKAKKLPPIWK

A0A6J1HJL3 40S ribosomal protein S13-like

7.2e-43

79.51

Show/hide

Query:  KAPPP--FSLAPEMVAENICKFAKKGLTSSQIGVILRDSHRIAQVKSLTGSKILCILKAHAL--EIPEDLYHLIKKVVSIRKHLERNKKDKDSKFRLILV
        K  PP    ++ + VAENICKFAKKGLT SQIGVILRDSH IAQVKS+TGSKIL ILKAH L  EIPEDLYHLIKK VSIRKHLERN+KDKDSKFRLILV
Subjt:  KAPPP--FSLAPEMVAENICKFAKKGLTSSQIGVILRDSHRIAQVKSLTGSKILCILKAHAL--EIPEDLYHLIKKVVSIRKHLERNKKDKDSKFRLILV

Query:  ESKIHRLTQYYKKAKKLPPIWK
        ES+IHRL +YYKK KKLPP+WK
Subjt:  ESKIHRLTQYYKKAKKLPPIWK

A0A6J1KV63 40S ribosomal protein S13-like

7.2e-43

79.51

Show/hide

Query:  KAPPP--FSLAPEMVAENICKFAKKGLTSSQIGVILRDSHRIAQVKSLTGSKILCILKAHAL--EIPEDLYHLIKKVVSIRKHLERNKKDKDSKFRLILV
        K  PP    ++ + VAENICKFAKKGLT SQIGVILRDSH IAQVKS+TGSKIL ILKAH L  EIPEDLYHLIKK VSIRKHLERN+KDKDSKFRLILV
Subjt:  KAPPP--FSLAPEMVAENICKFAKKGLTSSQIGVILRDSHRIAQVKSLTGSKILCILKAHAL--EIPEDLYHLIKKVVSIRKHLERNKKDKDSKFRLILV

Query:  ESKIHRLTQYYKKAKKLPPIWK
        ES+IHRL +YYKK KKLPP+WK
Subjt:  ESKIHRLTQYYKKAKKLPPIWK

A0A7N2MIC4 Ribosomal_S13_N domain-containing protein

4.2e-43

78.69

Show/hide

Query:  KAPPP--FSLAPEMVAENICKFAKKGLTSSQIGVILRDSHRIAQVKSLTGSKILCILKAHAL--EIPEDLYHLIKKVVSIRKHLERNKKDKDSKFRLILV
        K  PP    ++P+ V ENICKFAKKGLT SQIGVILRDSH IAQVKS+TGSKIL +LKAH L  EIPEDLYHLIKK VSIRKHLERN+KDKDSKFRLILV
Subjt:  KAPPP--FSLAPEMVAENICKFAKKGLTSSQIGVILRDSHRIAQVKSLTGSKILCILKAHAL--EIPEDLYHLIKKVVSIRKHLERNKKDKDSKFRLILV

Query:  ESKIHRLTQYYKKAKKLPPIWK
        ES+IHRL +YYKK KKLPP+WK
Subjt:  ESKIHRLTQYYKKAKKLPPIWK

SwissProt top hits

e value

%identity

Alignment

P46298 40S ribosomal protein S13

3.1e-43

78.15

Show/hide

Query:  APPPFSLAPEMVAENICKFAKKGLTSSQIGVILRDSHRIAQVKSLTGSKILCILKAHAL--EIPEDLYHLIKKVVSIRKHLERNKKDKDSKFRLILVESK
        AP    ++ + V E ICKFAKKGLT SQIGVILRDSH IAQVKS+TGSKIL ILKAH L  EIPEDLYHLIKK VSIRKHLER +KDKDSKFRLILVES+
Subjt:  APPPFSLAPEMVAENICKFAKKGLTSSQIGVILRDSHRIAQVKSLTGSKILCILKAHAL--EIPEDLYHLIKKVVSIRKHLERNKKDKDSKFRLILVESK

Query:  IHRLTQYYKKAKKLPPIWK
        IHRL +YYKK KKLPP+WK
Subjt:  IHRLTQYYKKAKKLPPIWK

P59223 40S ribosomal protein S13-1

1.4e-43

77.31

Show/hide

Query:  APPPFSLAPEMVAENICKFAKKGLTSSQIGVILRDSHRIAQVKSLTGSKILCILKAHAL--EIPEDLYHLIKKVVSIRKHLERNKKDKDSKFRLILVESK
        +P      P+ V E+ICKFAKKGLT SQIGVILRDSH I QVKS+TGSKIL ILKAH L  EIPEDLYHLIKK V+IRKHLERN+KDKDSKFRLILVES+
Subjt:  APPPFSLAPEMVAENICKFAKKGLTSSQIGVILRDSHRIAQVKSLTGSKILCILKAHAL--EIPEDLYHLIKKVVSIRKHLERNKKDKDSKFRLILVESK

Query:  IHRLTQYYKKAKKLPPIWK
        IHRL +YYKK KKLPP+WK
Subjt:  IHRLTQYYKKAKKLPPIWK

P59224 40S ribosomal protein S13-2

9.1e-43

83.33

Show/hide

Query:  VAENICKFAKKGLTSSQIGVILRDSHRIAQVKSLTGSKILCILKAHAL--EIPEDLYHLIKKVVSIRKHLERNKKDKDSKFRLILVESKIHRLTQYYKKA
        V E+ICKFAKKGLT SQIGVILRDSH I QVKS+TGSKIL ILKAH L  EIPEDLYHLIKK V+IRKHLERN+KDKDSKFRLILVES+IHRL +YYKK 
Subjt:  VAENICKFAKKGLTSSQIGVILRDSHRIAQVKSLTGSKILCILKAHAL--EIPEDLYHLIKKVVSIRKHLERNKKDKDSKFRLILVESKIHRLTQYYKKA

Query:  KKLPPIWK
        KKLPP+WK
Subjt:  KKLPPIWK

P62302 40S ribosomal protein S13

2.8e-44

77.87

Show/hide

Query:  KAPPP--FSLAPEMVAENICKFAKKGLTSSQIGVILRDSHRIAQVKSLTGSKILCILKAHAL--EIPEDLYHLIKKVVSIRKHLERNKKDKDSKFRLILV
        K  PP    ++ + V ENICKFAKKGLT SQIGVILRDSH IAQV S+TGSKIL ILKAH L  EIPEDLYHLIKK VSIRKHLERN+KDKDSKFRLILV
Subjt:  KAPPP--FSLAPEMVAENICKFAKKGLTSSQIGVILRDSHRIAQVKSLTGSKILCILKAHAL--EIPEDLYHLIKKVVSIRKHLERNKKDKDSKFRLILV

Query:  ESKIHRLTQYYKKAKKLPPIWK
        ES+IHRL +YYKK KKLPP+WK
Subjt:  ESKIHRLTQYYKKAKKLPPIWK

Q69UI2 40S ribosomal protein S13-1

4.8e-36

68.8

Show/hide

Query:  IASKAPPP--FSLAPEMVAENICKFAKKGLTSSQIGVILRDSHRIAQVKSLTGSKILCILKAHAL--EIPEDLYHLIKKVVSIRKHLERNKKDKDSKFRL
        I  K  PP     A   V E I K AKKG   SQIGV+LRD H I  VKS+TGSKIL ILKAH L  EIPEDLY LIKK V+IRKHLERN+KDKDSKFRL
Subjt:  IASKAPPP--FSLAPEMVAENICKFAKKGLTSSQIGVILRDSHRIAQVKSLTGSKILCILKAHAL--EIPEDLYHLIKKVVSIRKHLERNKKDKDSKFRL

Query:  ILVESKIHRLTQYYKKAKKLPPIWK
        ILVES+IHRL +YYK+ KKLPP WK
Subjt:  ILVESKIHRLTQYYKKAKKLPPIWK

Arabidopsis top hits

e value

%identity

Alignment

AT3G60770.1 Ribosomal protein S13/S15

1.0e-44

77.31

Show/hide

Query:  APPPFSLAPEMVAENICKFAKKGLTSSQIGVILRDSHRIAQVKSLTGSKILCILKAHAL--EIPEDLYHLIKKVVSIRKHLERNKKDKDSKFRLILVESK
        +P      P+ V E+ICKFAKKGLT SQIGVILRDSH I QVKS+TGSKIL ILKAH L  EIPEDLYHLIKK V+IRKHLERN+KDKDSKFRLILVES+
Subjt:  APPPFSLAPEMVAENICKFAKKGLTSSQIGVILRDSHRIAQVKSLTGSKILCILKAHAL--EIPEDLYHLIKKVVSIRKHLERNKKDKDSKFRLILVESK

Query:  IHRLTQYYKKAKKLPPIWK
        IHRL +YYKK KKLPP+WK
Subjt:  IHRLTQYYKKAKKLPPIWK

AT4G00100.1 ribosomal protein S13A

6.5e-44

83.33

Show/hide

Query:  VAENICKFAKKGLTSSQIGVILRDSHRIAQVKSLTGSKILCILKAHAL--EIPEDLYHLIKKVVSIRKHLERNKKDKDSKFRLILVESKIHRLTQYYKKA
        V E+ICKFAKKGLT SQIGVILRDSH I QVKS+TGSKIL ILKAH L  EIPEDLYHLIKK V+IRKHLERN+KDKDSKFRLILVES+IHRL +YYKK 
Subjt:  VAENICKFAKKGLTSSQIGVILRDSHRIAQVKSLTGSKILCILKAHAL--EIPEDLYHLIKKVVSIRKHLERNKKDKDSKFRLILVESKIHRLTQYYKKA

Query:  KKLPPIWK
        KKLPP+WK
Subjt:  KKLPPIWK

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGATGAGCGTCTCGACGCTGATGAGGCTCCAGGGGAAAAATGGTCATTTTACGCTCCGATTTCGCTTGTTTAAGCCTCGAATTGCTTCCAAAGCTCCGCCCCCATTCAG
TCTTGCCCCTGAAATGGTTGCTGAGAACATTTGCAAATTTGCCAAGAAGGGTTTGACATCATCTCAAATTGGTGTTATTCTCCGTGATTCTCACAGGATTGCTCAGGTAA
AAAGTTTAACTGGGAGCAAGATCTTGTGTATATTGAAGGCTCATGCTCTTGAAATCCCAGAGGATCTTTACCATCTCATCAAGAAAGTTGTTTCAATCAGAAAGCATTTG
GAGAGAAACAAGAAAGACAAGGATTCCAAGTTCAGGTTGATTTTGGTGGAGAGCAAGATCCATCGCCTGACCCAGTATTACAAGAAGGCAAAGAAGCTTCCCCCTATTTG
GAAGCAGTAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MMSVSTLMRLQGKNGHFTLRFRLFKPRIASKAPPPFSLAPEMVAENICKFAKKGLTSSQIGVILRDSHRIAQVKSLTGSKILCILKAHALEIPEDLYHLIKKVVSIRKHL
ERNKKDKDSKFRLILVESKIHRLTQYYKKAKKLPPIWKQ

Spg020749 (gene) of Sponge gourd (cylindrica) v1 genome