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Spg020756 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg020756
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionprotein CROWDED NUCLEI 1-like isoform X2
Genome locationscaffold10:26942719..26944076
RNA-Seq ExpressionSpg020756
SyntenySpg020756
Gene Ontology termsGO:0006997 - nucleus organization (biological process)
GO:0005652 - nuclear lamina (cellular component)
InterPro domainsIPR040418 - Protein crowded nuclei


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK00277.1 protein CROWDED NUCLEI 3 [Cucumis melo var. makuwa]4.1e-3984Show/hide
Query:  MFTPQRKGWPAVSLTPRSETKVAVSNSIVVGKGKAVAFTDGPPPPLGSLNDGLHKTAAAVDTGDMDDWKKFKKAGLLDAAVMERKDREALLEKASRLQSE
        MFTPQR GWPA SLTPR+E K+A+SNSI++GKGK V FTD PPPPLGSLND L+KTA AVDTGDMDDW+KFKKAGLLDAA MERKDREALLEKASRLQSE
Subjt:  MFTPQRKGWPAVSLTPRSETKVAVSNSIVVGKGKAVAFTDGPPPPLGSLNDGLHKTAAAVDTGDMDDWKKFKKAGLLDAAVMERKDREALLEKASRLQSE

XP_004147138.1 protein CROWDED NUCLEI 3 [Cucumis sativus]4.1e-3983Show/hide
Query:  MFTPQRKGWPAVSLTPRSETKVAVSNSIVVGKGKAVAFTDGPPPPLGSLNDGLHKTAAAVDTGDMDDWKKFKKAGLLDAAVMERKDREALLEKASRLQSE
        MFTPQR GWPA SLTPR+E K+A++NSI++GKGK V FTD PPPPLGSLND L+KTA AVDTGDMDDW+KFKKAGLLDAA MERKDREALLEKASRLQSE
Subjt:  MFTPQRKGWPAVSLTPRSETKVAVSNSIVVGKGKAVAFTDGPPPPLGSLNDGLHKTAAAVDTGDMDDWKKFKKAGLLDAAVMERKDREALLEKASRLQSE

XP_008467201.1 PREDICTED: protein CROWDED NUCLEI 3 [Cucumis melo]4.1e-3984Show/hide
Query:  MFTPQRKGWPAVSLTPRSETKVAVSNSIVVGKGKAVAFTDGPPPPLGSLNDGLHKTAAAVDTGDMDDWKKFKKAGLLDAAVMERKDREALLEKASRLQSE
        MFTPQR GWPA SLTPR+E K+A+SNSI++GKGK V FTD PPPPLGSLND L+KTA AVDTGDMDDW+KFKKAGLLDAA MERKDREALLEKASRLQSE
Subjt:  MFTPQRKGWPAVSLTPRSETKVAVSNSIVVGKGKAVAFTDGPPPPLGSLNDGLHKTAAAVDTGDMDDWKKFKKAGLLDAAVMERKDREALLEKASRLQSE

XP_038907101.1 protein CROWDED NUCLEI 1 isoform X1 [Benincasa hispida]2.6e-3884Show/hide
Query:  MFTPQRKGWPAVSLTPRSETKVAVSNSIVVGKGKAVAFTDGPPPPLGSLNDGLHKTAAAVDTGDMDDWKKFKKAGLLDAAVMERKDREALLEKASRLQSE
        MFTPQR GWPAVSLTPR+E K+AVSNSI+VGKGK V FT  PPPPLGSLND L+KTA AVDTGDMDDW  FKKAGLLDAA MERKD+EALLEKASRLQSE
Subjt:  MFTPQRKGWPAVSLTPRSETKVAVSNSIVVGKGKAVAFTDGPPPPLGSLNDGLHKTAAAVDTGDMDDWKKFKKAGLLDAAVMERKDREALLEKASRLQSE

XP_038907102.1 protein CROWDED NUCLEI 1 isoform X2 [Benincasa hispida]2.6e-3884Show/hide
Query:  MFTPQRKGWPAVSLTPRSETKVAVSNSIVVGKGKAVAFTDGPPPPLGSLNDGLHKTAAAVDTGDMDDWKKFKKAGLLDAAVMERKDREALLEKASRLQSE
        MFTPQR GWPAVSLTPR+E K+AVSNSI+VGKGK V FT  PPPPLGSLND L+KTA AVDTGDMDDW  FKKAGLLDAA MERKD+EALLEKASRLQSE
Subjt:  MFTPQRKGWPAVSLTPRSETKVAVSNSIVVGKGKAVAFTDGPPPPLGSLNDGLHKTAAAVDTGDMDDWKKFKKAGLLDAAVMERKDREALLEKASRLQSE

TrEMBL top hitse value%identityAlignment
A0A1S3CSZ3 protein CROWDED NUCLEI 32.0e-3984Show/hide
Query:  MFTPQRKGWPAVSLTPRSETKVAVSNSIVVGKGKAVAFTDGPPPPLGSLNDGLHKTAAAVDTGDMDDWKKFKKAGLLDAAVMERKDREALLEKASRLQSE
        MFTPQR GWPA SLTPR+E K+A+SNSI++GKGK V FTD PPPPLGSLND L+KTA AVDTGDMDDW+KFKKAGLLDAA MERKDREALLEKASRLQSE
Subjt:  MFTPQRKGWPAVSLTPRSETKVAVSNSIVVGKGKAVAFTDGPPPPLGSLNDGLHKTAAAVDTGDMDDWKKFKKAGLLDAAVMERKDREALLEKASRLQSE

A0A5B7BDY8 Uncharacterized protein (Fragment)1.6e-2563.46Show/hide
Query:  MFTPQRKGWPAVSLTPRSETKVA----VSNSIVVGKGKAVAFTDGPPPPLGSLNDGLHKTAAAVDTGDMDDWKKFKKAGLLDAAVMERKDREALLEKASR
        MFTPQRK WPA+S+TPRSE + +     +N   VGKGKAVAF DGPPPPLGSLN+   KT A  D GDMDDW++F++AGLLD   MERKD+EAL+EK S+
Subjt:  MFTPQRKGWPAVSLTPRSETKVA----VSNSIVVGKGKAVAFTDGPPPPLGSLNDGLHKTAAAVDTGDMDDWKKFKKAGLLDAAVMERKDREALLEKASR

Query:  LQSE
        L  E
Subjt:  LQSE

A0A5D3BM77 Protein CROWDED NUCLEI 32.0e-3984Show/hide
Query:  MFTPQRKGWPAVSLTPRSETKVAVSNSIVVGKGKAVAFTDGPPPPLGSLNDGLHKTAAAVDTGDMDDWKKFKKAGLLDAAVMERKDREALLEKASRLQSE
        MFTPQR GWPA SLTPR+E K+A+SNSI++GKGK V FTD PPPPLGSLND L+KTA AVDTGDMDDW+KFKKAGLLDAA MERKDREALLEKASRLQSE
Subjt:  MFTPQRKGWPAVSLTPRSETKVAVSNSIVVGKGKAVAFTDGPPPPLGSLNDGLHKTAAAVDTGDMDDWKKFKKAGLLDAAVMERKDREALLEKASRLQSE

A0A6J1DX82 protein CROWDED NUCLEI 1-like isoform X12.2e-3882.86Show/hide
Query:  MFTPQRKGWPAVSLTPRSETKVAVSNSIVVGKGKA-----VAFTDGPPPPLGSLNDGLHKTAAAVDTGDMDDWKKFKKAGLLDAAVMERKDREALLEKAS
        MFTPQRKGWPAVSLTPRSE K AVSNSI+VGKGK      VA TD PPP LGSL DGLH TAAAVDT DMDDW+KFKKAGLLDAA MERKDREALLEKAS
Subjt:  MFTPQRKGWPAVSLTPRSETKVAVSNSIVVGKGKA-----VAFTDGPPPPLGSLNDGLHKTAAAVDTGDMDDWKKFKKAGLLDAAVMERKDREALLEKAS

Query:  RLQSE
        RLQ+E
Subjt:  RLQSE

A0A6J1E0M3 protein CROWDED NUCLEI 1-like isoform X22.2e-3882.86Show/hide
Query:  MFTPQRKGWPAVSLTPRSETKVAVSNSIVVGKGKA-----VAFTDGPPPPLGSLNDGLHKTAAAVDTGDMDDWKKFKKAGLLDAAVMERKDREALLEKAS
        MFTPQRKGWPAVSLTPRSE K AVSNSI+VGKGK      VA TD PPP LGSL DGLH TAAAVDT DMDDW+KFKKAGLLDAA MERKDREALLEKAS
Subjt:  MFTPQRKGWPAVSLTPRSETKVAVSNSIVVGKGKA-----VAFTDGPPPPLGSLNDGLHKTAAAVDTGDMDDWKKFKKAGLLDAAVMERKDREALLEKAS

Query:  RLQSE
        RLQ+E
Subjt:  RLQSE

SwissProt top hitse value%identityAlignment
I0J0E7 Nuclear matrix constituent protein 13.6e-0636.54Show/hide
Query:  MFTPQRKGWPAVSLTPRSETKVAVSNSIVVGKG--KAVAFTDGPPPPLGSLNDGLHKTAAAVDTG--DMDDWKKFKKAGLLDAAVMERKDREALLEKASR
        M TPQR  W         ++KV+       GKG  K +     P PPLG LN G       +D G  DM+ WK+FK  GLLD ++  +KDRE+L  +   
Subjt:  MFTPQRKGWPAVSLTPRSETKVAVSNSIVVGKG--KAVAFTDGPPPPLGSLNDGLHKTAAAVDTG--DMDDWKKFKKAGLLDAAVMERKDREALLEKASR

Query:  LQSE
        L+ +
Subjt:  LQSE

Q9CA42 Protein CROWDED NUCLEI 34.5e-0939.81Show/hide
Query:  MFTPQRKGWPAVSLTPRSETKVAVSNSIVVGKGKAVAFTD---GPPPPLGSLNDGLHKTAAAVDTGDMDDWKKFKKAGLLDAAVMERKDREALLEKASRL
        MFTPQR  WP                     KGKA+AF+D    PPP    L +              DDW+KFK+ GLLD A +ERKDR+AL+EK  +L
Subjt:  MFTPQRKGWPAVSLTPRSETKVAVSNSIVVGKGKAVAFTD---GPPPPLGSLNDGLHKTAAAVDTGDMDDWKKFKKAGLLDAAVMERKDREALLEKASRL

Query:  QSE
        + E
Subjt:  QSE

Q9SAF6 Protein CROWDED NUCLEI 25.7e-1248.96Show/hide
Query:  LTPRSET-KV-AVSNSIVVG-KGKAVAFTDG------PPPPLGSLNDGLHKTAAAVDTGDMDDWKKFKKAGLLDAAVMERKDREALLEKASRLQSE
        +TPRSET K+  V+N      KGKAVAF+D       PPPP+G+L  G   +    D  DM DW++F++ GLL+ A ME+KD+EALLEK S L+ E
Subjt:  LTPRSET-KV-AVSNSIVVG-KGKAVAFTDG------PPPPLGSLNDGLHKTAAAVDTGDMDDWKKFKKAGLLDAAVMERKDREALLEKASRLQSE

Arabidopsis top hitse value%identityAlignment
AT1G13220.1 nuclear matrix constituent protein-related2.5e-1850.46Show/hide
Query:  MFTPQRKGWPAVSLTPRSET-KV-AVSNSIVVG-KGKAVAFTDG------PPPPLGSLNDGLHKTAAAVDTGDMDDWKKFKKAGLLDAAVMERKDREALL
        MFTPQRK W + ++TPRSET K+  V+N      KGKAVAF+D       PPPP+G+L  G   +    D  DM DW++F++ GLL+ A ME+KD+EALL
Subjt:  MFTPQRKGWPAVSLTPRSET-KV-AVSNSIVVG-KGKAVAFTDG------PPPPLGSLNDGLHKTAAAVDTGDMDDWKKFKKAGLLDAAVMERKDREALL

Query:  EKASRLQSE
        EK S L+ E
Subjt:  EKASRLQSE

AT1G13220.2 nuclear matrix constituent protein-related4.1e-1348.96Show/hide
Query:  LTPRSET-KV-AVSNSIVVG-KGKAVAFTDG------PPPPLGSLNDGLHKTAAAVDTGDMDDWKKFKKAGLLDAAVMERKDREALLEKASRLQSE
        +TPRSET K+  V+N      KGKAVAF+D       PPPP+G+L  G   +    D  DM DW++F++ GLL+ A ME+KD+EALLEK S L+ E
Subjt:  LTPRSET-KV-AVSNSIVVG-KGKAVAFTDG------PPPPLGSLNDGLHKTAAAVDTGDMDDWKKFKKAGLLDAAVMERKDREALLEKASRLQSE

AT1G68790.1 little nuclei33.2e-1039.81Show/hide
Query:  MFTPQRKGWPAVSLTPRSETKVAVSNSIVVGKGKAVAFTD---GPPPPLGSLNDGLHKTAAAVDTGDMDDWKKFKKAGLLDAAVMERKDREALLEKASRL
        MFTPQR  WP                     KGKA+AF+D    PPP    L +              DDW+KFK+ GLLD A +ERKDR+AL+EK  +L
Subjt:  MFTPQRKGWPAVSLTPRSETKVAVSNSIVVGKGKAVAFTD---GPPPPLGSLNDGLHKTAAAVDTGDMDDWKKFKKAGLLDAAVMERKDREALLEKASRL

Query:  QSE
        + E
Subjt:  QSE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCACGCCTCAGAGAAAGGGGTGGCCTGCTGTGTCCCTCACGCCTCGAAGCGAAACAAAAGTTGCAGTTTCCAATTCCATTGTTGTGGGGAAAGGAAAGGCTGTGGC
TTTTACAGACGGCCCTCCGCCGCCGTTGGGCTCTCTGAACGACGGATTGCATAAAACTGCGGCGGCTGTGGATACTGGGGACATGGACGATTGGAAGAAGTTTAAGAAGG
CGGGGTTGTTGGATGCGGCCGTAATGGAGCGCAAAGATCGGGAGGCACTTCTCGAGAAGGCTTCAAGGCTTCAAAGCGAGGATAGGATTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTCACGCCTCAGAGAAAGGGGTGGCCTGCTGTGTCCCTCACGCCTCGAAGCGAAACAAAAGTTGCAGTTTCCAATTCCATTGTTGTGGGGAAAGGAAAGGCTGTGGC
TTTTACAGACGGCCCTCCGCCGCCGTTGGGCTCTCTGAACGACGGATTGCATAAAACTGCGGCGGCTGTGGATACTGGGGACATGGACGATTGGAAGAAGTTTAAGAAGG
CGGGGTTGTTGGATGCGGCCGTAATGGAGCGCAAAGATCGGGAGGCACTTCTCGAGAAGGCTTCAAGGCTTCAAAGCGAGGATAGGATTTAG
Protein sequenceShow/hide protein sequence
MFTPQRKGWPAVSLTPRSETKVAVSNSIVVGKGKAVAFTDGPPPPLGSLNDGLHKTAAAVDTGDMDDWKKFKKAGLLDAAVMERKDREALLEKASRLQSEDRI