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Spg020774 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg020774
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H
Genome locationscaffold10:25491234..25494524
RNA-Seq ExpressionSpg020774
SyntenySpg020774
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036942.1 uncharacterized protein E6C27_scaffold86G00180 [Cucumis melo var. makuwa]7.6e-0536.05Show/hide
Query:  EPEIHSVNMIIGEDTSVKDLCKPKPLVIFFKEQLSGVQTDLTISQPLTIQIPSSYKYKDNKAVPWNYGCHGLNEEAAIVTNISGIS
        E +   + +++ E +  KD   P+PL +F++E      T     + LTIQ+PS +K+KD KAVPW Y C  +     +V NI+ IS
Subjt:  EPEIHSVNMIIGEDTSVKDLCKPKPLVIFFKEQLSGVQTDLTISQPLTIQIPSSYKYKDNKAVPWNYGCHGLNEEAAIVTNISGIS

KAA0037621.1 uncharacterized protein E6C27_scaffold277G002820 [Cucumis melo var. makuwa]7.6e-0531.62Show/hide
Query:  IIGEDTSVKDLCKPKPLVIFFKEQLSGVQTDLTISQPLTIQIPSSYKYKDNKAVPWNYGCHGLNEEAA-IVTNISGI------------SAEADKLVLEM
        ++ E +  KD   P+PL +F++E      T     + LTIQ+PS +K+KD KAVPW Y C  +   +   +T ISGI            +  +D L+LE 
Subjt:  IIGEDTSVKDLCKPKPLVIFFKEQLSGVQTDLTISQPLTIQIPSSYKYKDNKAVPWNYGCHGLNEEAA-IVTNISGI------------SAEADKLVLEM

Query:  SDLSITAIMEEHVESVD
           +    ++EH +  D
Subjt:  SDLSITAIMEEHVESVD

KAA0046213.1 uncharacterized protein E6C27_scaffold284G00010 [Cucumis melo var. makuwa]5.8e-0531.62Show/hide
Query:  IIGEDTSVKDLCKPKPLVIFFKEQLSGVQTDLTISQPLTIQIPSSYKYKDNKAVPWNYGCHGLNEEAA-IVTNISGI------------SAEADKLVLEM
        ++ E +  KD   P+PL +F++E  +G  T     + L IQ+PS +K+KD KAVPW Y C  +   +   +T ISGI            +  +D L+LE 
Subjt:  IIGEDTSVKDLCKPKPLVIFFKEQLSGVQTDLTISQPLTIQIPSSYKYKDNKAVPWNYGCHGLNEEAA-IVTNISGI------------SAEADKLVLEM

Query:  SDLSITAIMEEHVESVD
           +    ++EH +  D
Subjt:  SDLSITAIMEEHVESVD

XP_022157707.1 uncharacterized protein LOC111024360 [Momordica charantia]3.2e-1946.67Show/hide
Query:  EIHSVNMIIGEDTSVKDLCKPKPLVIFFKEQLSGVQTDLTISQPLTIQIPSSYKYKDNKAVPWNYGCHGLNEEAAIVTNISGISA-EADKLVLEMSDLSI
        E H VNM+  E+ S K   K +PLV+ FKEQ + +  + +I QPLTIQ+PS YKYKDNKAVPW+YGCH L+EE +IVTNIS +S      +  ++  L  
Subjt:  EIHSVNMIIGEDTSVKDLCKPKPLVIFFKEQLSGVQTDLTISQPLTIQIPSSYKYKDNKAVPWNYGCHGLNEEAAIVTNISGISA-EADKLVLEMSDLSI

Query:  TAIMEEH-VESVDSLVYKCP
        + + E+H + +V      CP
Subjt:  TAIMEEH-VESVDSLVYKCP

XP_022157707.1 uncharacterized protein LOC111024360 [Momordica charantia]1.3e-0946.67Show/hide
Query:  MSKILEILTAQKGKSTAETHELEDVA---------PPGFTPSVPQHSGASATSVQPIFYTHAPQMPPLGGGAGQNPTFLIPEQVHSYAQQ
        M+KIL++L AQKGK   E     DV           PGFTP V  H+G +    QPIFYT  P M   G GA QN TF++ EQVH   QQ
Subjt:  MSKILEILTAQKGKSTAETHELEDVA---------PPGFTPSVPQHSGASATSVQPIFYTHAPQMPPLGGGAGQNPTFLIPEQVHSYAQQ

XP_022157707.1 uncharacterized protein LOC111024360 [Momordica charantia]4.5e-0538.46Show/hide
Query:  MIIGEDTSVKDLCKPKPLVIFFKEQLSGVQTDLTISQPLTIQIPSSYKYKDNKAVPWNYGCHGLNEEAAIVTNISGIS
        +++ E +  KD   P+PL +F++E      T     + LTIQ+PS +K+KD KA+PW Y C  +     +V NI+GIS
Subjt:  MIIGEDTSVKDLCKPKPLVIFFKEQLSGVQTDLTISQPLTIQIPSSYKYKDNKAVPWNYGCHGLNEEAAIVTNISGIS

TrEMBL top hitse value%identityAlignment
A0A5A7T0H8 Uncharacterized protein3.7e-0536.05Show/hide
Query:  EPEIHSVNMIIGEDTSVKDLCKPKPLVIFFKEQLSGVQTDLTISQPLTIQIPSSYKYKDNKAVPWNYGCHGLNEEAAIVTNISGIS
        E +   + +++ E +  KD   P+PL +F++E      T     + LTIQ+PS +K+KD KAVPW Y C  +     +V NI+ IS
Subjt:  EPEIHSVNMIIGEDTSVKDLCKPKPLVIFFKEQLSGVQTDLTISQPLTIQIPSSYKYKDNKAVPWNYGCHGLNEEAAIVTNISGIS

A0A5A7TRL7 Ribonuclease H2.8e-0531.62Show/hide
Query:  IIGEDTSVKDLCKPKPLVIFFKEQLSGVQTDLTISQPLTIQIPSSYKYKDNKAVPWNYGCHGLNEEAA-IVTNISGI------------SAEADKLVLEM
        ++ E +  KD   P+PL +F++E  +G  T     + L IQ+PS +K+KD KAVPW Y C  +   +   +T ISGI            +  +D L+LE 
Subjt:  IIGEDTSVKDLCKPKPLVIFFKEQLSGVQTDLTISQPLTIQIPSSYKYKDNKAVPWNYGCHGLNEEAA-IVTNISGI------------SAEADKLVLEM

Query:  SDLSITAIMEEHVESVD
           +    ++EH +  D
Subjt:  SDLSITAIMEEHVESVD

A0A5A7V3W7 Retrotrans_gag domain-containing protein3.7e-0531.73Show/hide
Query:  IIGEDTSVKDLCKPKPLVIFFKEQLSGVQTDLTISQPLTIQIPSSYKYKDNKAVPWNYGCHGLNEEAAIVTNISGISAEADKLVLEMSDLSITAIMEEHV
        ++ E +  KD   P+PL +F++E      T     + LTIQ+PS +K+KD KAVPW Y CH       ++T+   ++  +D L+LE    +    ++E+ 
Subjt:  IIGEDTSVKDLCKPKPLVIFFKEQLSGVQTDLTISQPLTIQIPSSYKYKDNKAVPWNYGCHGLNEEAAIVTNISGISAEADKLVLEMSDLSITAIMEEHV

Query:  ESVD
        +  D
Subjt:  ESVD

A0A6J1DV70 uncharacterized protein LOC1110243601.5e-1946.67Show/hide
Query:  EIHSVNMIIGEDTSVKDLCKPKPLVIFFKEQLSGVQTDLTISQPLTIQIPSSYKYKDNKAVPWNYGCHGLNEEAAIVTNISGISA-EADKLVLEMSDLSI
        E H VNM+  E+ S K   K +PLV+ FKEQ + +  + +I QPLTIQ+PS YKYKDNKAVPW+YGCH L+EE +IVTNIS +S      +  ++  L  
Subjt:  EIHSVNMIIGEDTSVKDLCKPKPLVIFFKEQLSGVQTDLTISQPLTIQIPSSYKYKDNKAVPWNYGCHGLNEEAAIVTNISGISA-EADKLVLEMSDLSI

Query:  TAIMEEH-VESVDSLVYKCP
        + + E+H + +V      CP
Subjt:  TAIMEEH-VESVDSLVYKCP

A0A6J1DV70 uncharacterized protein LOC1110243606.5e-1046.67Show/hide
Query:  MSKILEILTAQKGKSTAETHELEDVA---------PPGFTPSVPQHSGASATSVQPIFYTHAPQMPPLGGGAGQNPTFLIPEQVHSYAQQ
        M+KIL++L AQKGK   E     DV           PGFTP V  H+G +    QPIFYT  P M   G GA QN TF++ EQVH   QQ
Subjt:  MSKILEILTAQKGKSTAETHELEDVA---------PPGFTPSVPQHSGASATSVQPIFYTHAPQMPPLGGGAGQNPTFLIPEQVHSYAQQ

A0A6J1DV70 uncharacterized protein LOC1110243602.2e-0538.46Show/hide
Query:  MIIGEDTSVKDLCKPKPLVIFFKEQLSGVQTDLTISQPLTIQIPSSYKYKDNKAVPWNYGCHGLNEEAAIVTNISGIS
        +++ E +  KD   P+PL +F++E      T     + LTIQ+PS +K+KD KA+PW Y C  +     +V NI+GIS
Subjt:  MIIGEDTSVKDLCKPKPLVIFFKEQLSGVQTDLTISQPLTIQIPSSYKYKDNKAVPWNYGCHGLNEEAAIVTNISGIS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAAAAATCCTGGAGATCCTTACTGCGCAAAAGGGGAAATCTACGGCCGAAACTCATGAACTAGAAGATGTTGCACCTCCAGGTTTTACCCCATCAGTACCTCAGCA
TAGCGGGGCATCGGCTACATCTGTACAACCGATATTCTATACTCATGCACCTCAAATGCCTCCATTAGGAGGAGGGGCAGGTCAAAACCCCACATTTCTCATTCCTGAGC
AAGTCCACTCATATGCACAACAGGGGCAATATAAGGGTCGTCAGACGGTACAGGGACAAATGAATTATTCATCAGGTGCTCAAAATTCCAACCCGTCGGGTGCTCAACGA
GTTTTTAGAAGCAATTTGAGGAGCTTTGATCCCATCCCTGAAAAGGAACCGGAAATTCATTCTGTAAACATGATCATTGGAGAAGATACCTCAGTAAAAGATTTATGTAA
GCCAAAACCCCTGGTAATATTTTTTAAGGAACAACTTTCAGGTGTCCAAACTGATTTGACCATCTCACAACCGTTAACTATCCAAATCCCTAGTTCTTACAAATATAAAG
ACAACAAAGCAGTACCATGGAATTATGGTTGTCATGGCCTCAATGAAGAAGCTGCTATCGTCACCAACATTTCGGGAATCAGTGCCGAAGCAGACAAGTTAGTATTAGAG
ATGTCAGATTTATCCATCACCGCCATCATGGAAGAACATGTGGAATCTGTAGATTCCTTGGTATACAAGTGCCCTCCAGGTTTCGAACTATGCAATTGGGAATCCACAGA
ATTGCCTATTCATTTTGAAGAAGCCCAAGAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCAAAAATCCTGGAGATCCTTACTGCGCAAAAGGGGAAATCTACGGCCGAAACTCATGAACTAGAAGATGTTGCACCTCCAGGTTTTACCCCATCAGTACCTCAGCA
TAGCGGGGCATCGGCTACATCTGTACAACCGATATTCTATACTCATGCACCTCAAATGCCTCCATTAGGAGGAGGGGCAGGTCAAAACCCCACATTTCTCATTCCTGAGC
AAGTCCACTCATATGCACAACAGGGGCAATATAAGGGTCGTCAGACGGTACAGGGACAAATGAATTATTCATCAGGTGCTCAAAATTCCAACCCGTCGGGTGCTCAACGA
GTTTTTAGAAGCAATTTGAGGAGCTTTGATCCCATCCCTGAAAAGGAACCGGAAATTCATTCTGTAAACATGATCATTGGAGAAGATACCTCAGTAAAAGATTTATGTAA
GCCAAAACCCCTGGTAATATTTTTTAAGGAACAACTTTCAGGTGTCCAAACTGATTTGACCATCTCACAACCGTTAACTATCCAAATCCCTAGTTCTTACAAATATAAAG
ACAACAAAGCAGTACCATGGAATTATGGTTGTCATGGCCTCAATGAAGAAGCTGCTATCGTCACCAACATTTCGGGAATCAGTGCCGAAGCAGACAAGTTAGTATTAGAG
ATGTCAGATTTATCCATCACCGCCATCATGGAAGAACATGTGGAATCTGTAGATTCCTTGGTATACAAGTGCCCTCCAGGTTTCGAACTATGCAATTGGGAATCCACAGA
ATTGCCTATTCATTTTGAAGAAGCCCAAGAGTAA
Protein sequenceShow/hide protein sequence
MSKILEILTAQKGKSTAETHELEDVAPPGFTPSVPQHSGASATSVQPIFYTHAPQMPPLGGGAGQNPTFLIPEQVHSYAQQGQYKGRQTVQGQMNYSSGAQNSNPSGAQR
VFRSNLRSFDPIPEKEPEIHSVNMIIGEDTSVKDLCKPKPLVIFFKEQLSGVQTDLTISQPLTIQIPSSYKYKDNKAVPWNYGCHGLNEEAAIVTNISGISAEADKLVLE
MSDLSITAIMEEHVESVDSLVYKCPPGFELCNWESTELPIHFEEAQE