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Spg020790 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg020790
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRT_RNaseH_2 domain-containing protein
Genome locationscaffold10:29263307..29271756
RNA-Seq ExpressionSpg020790
SyntenySpg020790
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PON35554.1 hypothetical protein PanWU01x14_335450, partial [Parasponia andersonii]1.6e-0834.59Show/hide
Query:  VRFVNRLARAKYD-ELLKRDFLFERGF-------SGDLPHFLRGGITNHGWELFCSKPESVNAQVVSEFYANIDEEDGFQVIVRGVEVDWSPSAISALYN
        V+F    A  +Y+  +  R    E+GF        G LP F+   IT H W+ FC+ PE     +V EFYAN+ +     V VRGV+V WS  AI+A++ 
Subjt:  VRFVNRLARAKYD-ELLKRDFLFERGF-------SGDLPHFLRGGITNHGWELFCSKPESVNAQVVSEFYANIDEEDGFQVIVRGVEVDWSPSAISALYN

Query:  LQDFPHAGYNEMVVAPSNEQLSDAVREVGVEGA
        L D P   ++E +   +   L   +  V V GA
Subjt:  LQDFPHAGYNEMVVAPSNEQLSDAVREVGVEGA

PON42276.1 hypothetical protein PanWU01x14_283280 [Parasponia andersonii]5.3e-1237.12Show/hide
Query:  VRFVNRLARAKYDE-LLKRDFLFERGFSGD------LPHFLRGGITNHGWELFCSKPESVNAQVVSEFYANIDEEDGFQVIVRGVEVDWSPSAISALYNL
        V+  +  A  +Y+E +  R    E+GF GD       P F+   IT H W+LFC+ PE + A +V EFYAN+   D   V VRGV+V  S  AI+ +Y L
Subjt:  VRFVNRLARAKYDE-LLKRDFLFERGFSGD------LPHFLRGGITNHGWELFCSKPESVNAQVVSEFYANIDEEDGFQVIVRGVEVDWSPSAISALYNL

Query:  QDFPHAGYNEMVVAPSNEQLSDAVREVGVEGA
         D P   ++E V A +  +L+  +  V + GA
Subjt:  QDFPHAGYNEMVVAPSNEQLSDAVREVGVEGA

PON46472.1 hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii]9.4e-0933.83Show/hide
Query:  VRFVNRLARAKYD-ELLKRDFLFERGF-------SGDLPHFLRGGITNHGWELFCSKPESVNAQVVSEFYANIDEEDGFQVIVRGVEVDWSPSAISALYN
        V+F    A  +Y+  +  R    E+GF        G LP F+   IT H W+ FC+ PE     +V EFYAN+ + +   V VRGV+V WS  AI+A++ 
Subjt:  VRFVNRLARAKYD-ELLKRDFLFERGF-------SGDLPHFLRGGITNHGWELFCSKPESVNAQVVSEFYANIDEEDGFQVIVRGVEVDWSPSAISALYN

Query:  LQDFPHAGYNEMVVAPSNEQLSDAVREVGVEGA
        L D P   ++E +   + + L   +  V   GA
Subjt:  LQDFPHAGYNEMVVAPSNEQLSDAVREVGVEGA

PON65868.1 hypothetical protein PanWU01x14_113570 [Parasponia andersonii]2.0e-1137.12Show/hide
Query:  VRFVNRLARAKYDE-LLKRDFLFERGFSGD------LPHFLRGGITNHGWELFCSKPESVNAQVVSEFYANIDEEDGFQVIVRGVEVDWSPSAISALYNL
        V+F +  A  +Y+E +  R    E+GF GD       P F+   IT H W+LFC+ PE     +V EFYAN+   D   V VRGV+V  S  AI+ +Y L
Subjt:  VRFVNRLARAKYDE-LLKRDFLFERGFSGD------LPHFLRGGITNHGWELFCSKPESVNAQVVSEFYANIDEEDGFQVIVRGVEVDWSPSAISALYNL

Query:  QDFPHAGYNEMVVAPSNEQLSDAVREVGVEGA
         D P   ++E V A +  +L+  +  V + GA
Subjt:  QDFPHAGYNEMVVAPSNEQLSDAVREVGVEGA

PON90635.1 hypothetical protein TorRG33x02_134920 [Trema orientale]3.6e-0833.33Show/hide
Query:  VRFVNRLARAKYDELLKRDFL-FERGFSGD------LPHFLRGGITNHGWELFCSKPESVNAQVVSEFYANIDEEDGFQVIVRGVEVDWSPSAISALYNL
        V+F +  A A+Y+E +K   L  E+GF+ +       P F+   I  H W+LFC+  E     +V EFYAN+ + +   V V+GV+V WS  AI+ L+ L
Subjt:  VRFVNRLARAKYDELLKRDFL-FERGFSGD------LPHFLRGGITNHGWELFCSKPESVNAQVVSEFYANIDEEDGFQVIVRGVEVDWSPSAISALYNL

Query:  QD--FPHAGYNEMVVAPSNEQLSDAVREVGVE
         D    H+ + E V       + + +   GVE
Subjt:  QD--FPHAGYNEMVVAPSNEQLSDAVREVGVE

TrEMBL top hitse value%identityAlignment
A0A2P5AGA5 Uncharacterized protein (Fragment)7.8e-0934.59Show/hide
Query:  VRFVNRLARAKYD-ELLKRDFLFERGF-------SGDLPHFLRGGITNHGWELFCSKPESVNAQVVSEFYANIDEEDGFQVIVRGVEVDWSPSAISALYN
        V+F    A  +Y+  +  R    E+GF        G LP F+   IT H W+ FC+ PE     +V EFYAN+ +     V VRGV+V WS  AI+A++ 
Subjt:  VRFVNRLARAKYD-ELLKRDFLFERGF-------SGDLPHFLRGGITNHGWELFCSKPESVNAQVVSEFYANIDEEDGFQVIVRGVEVDWSPSAISALYN

Query:  LQDFPHAGYNEMVVAPSNEQLSDAVREVGVEGA
        L D P   ++E +   +   L   +  V V GA
Subjt:  LQDFPHAGYNEMVVAPSNEQLSDAVREVGVEGA

A0A2P5B0K0 Uncharacterized protein2.6e-1237.12Show/hide
Query:  VRFVNRLARAKYDE-LLKRDFLFERGFSGD------LPHFLRGGITNHGWELFCSKPESVNAQVVSEFYANIDEEDGFQVIVRGVEVDWSPSAISALYNL
        V+  +  A  +Y+E +  R    E+GF GD       P F+   IT H W+LFC+ PE + A +V EFYAN+   D   V VRGV+V  S  AI+ +Y L
Subjt:  VRFVNRLARAKYDE-LLKRDFLFERGFSGD------LPHFLRGGITNHGWELFCSKPESVNAQVVSEFYANIDEEDGFQVIVRGVEVDWSPSAISALYNL

Query:  QDFPHAGYNEMVVAPSNEQLSDAVREVGVEGA
         D P   ++E V A +  +L+  +  V + GA
Subjt:  QDFPHAGYNEMVVAPSNEQLSDAVREVGVEGA

A0A2P5BCG4 Uncharacterized protein (Fragment)4.6e-0933.83Show/hide
Query:  VRFVNRLARAKYD-ELLKRDFLFERGF-------SGDLPHFLRGGITNHGWELFCSKPESVNAQVVSEFYANIDEEDGFQVIVRGVEVDWSPSAISALYN
        V+F    A  +Y+  +  R    E+GF        G LP F+   IT H W+ FC+ PE     +V EFYAN+ + +   V VRGV+V WS  AI+A++ 
Subjt:  VRFVNRLARAKYD-ELLKRDFLFERGF-------SGDLPHFLRGGITNHGWELFCSKPESVNAQVVSEFYANIDEEDGFQVIVRGVEVDWSPSAISALYN

Query:  LQDFPHAGYNEMVVAPSNEQLSDAVREVGVEGA
        L D P   ++E +   + + L   +  V   GA
Subjt:  LQDFPHAGYNEMVVAPSNEQLSDAVREVGVEGA

A0A2P5CXV1 Uncharacterized protein9.8e-1237.12Show/hide
Query:  VRFVNRLARAKYDE-LLKRDFLFERGFSGD------LPHFLRGGITNHGWELFCSKPESVNAQVVSEFYANIDEEDGFQVIVRGVEVDWSPSAISALYNL
        V+F +  A  +Y+E +  R    E+GF GD       P F+   IT H W+LFC+ PE     +V EFYAN+   D   V VRGV+V  S  AI+ +Y L
Subjt:  VRFVNRLARAKYDE-LLKRDFLFERGFSGD------LPHFLRGGITNHGWELFCSKPESVNAQVVSEFYANIDEEDGFQVIVRGVEVDWSPSAISALYNL

Query:  QDFPHAGYNEMVVAPSNEQLSDAVREVGVEGA
         D P   ++E V A +  +L+  +  V + GA
Subjt:  QDFPHAGYNEMVVAPSNEQLSDAVREVGVEGA

A0A2P5EYL5 Uncharacterized protein1.7e-0833.33Show/hide
Query:  VRFVNRLARAKYDELLKRDFL-FERGFSGD------LPHFLRGGITNHGWELFCSKPESVNAQVVSEFYANIDEEDGFQVIVRGVEVDWSPSAISALYNL
        V+F +  A A+Y+E +K   L  E+GF+ +       P F+   I  H W+LFC+  E     +V EFYAN+ + +   V V+GV+V WS  AI+ L+ L
Subjt:  VRFVNRLARAKYDELLKRDFL-FERGFSGD------LPHFLRGGITNHGWELFCSKPESVNAQVVSEFYANIDEEDGFQVIVRGVEVDWSPSAISALYNL

Query:  QD--FPHAGYNEMVVAPSNEQLSDAVREVGVE
         D    H+ + E V       + + +   GVE
Subjt:  QD--FPHAGYNEMVVAPSNEQLSDAVREVGVE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGTCGCATTTCATTTTAGCCTTGCCAGAAATGCGGTCGCATTTCTGGGAATTTTTCCAGATTCCTCTGTTTTCTGCAAAACACCAAAACCAAAAACTGATGCGACG
ACACGAAGACTGTGAGTCTCACTGGCTGACGCACAATGTTATTTCCTCTTTTGTGCAAAGCTTGCGGACAACCGTTAGTGTCCTCCCTACTATTCTCCTGGCCAAGAACG
ACTTGTGGAAGTCTATAGAGATAGGGAATGGGAAGGGAATACTTGAAGGATCAAGCTGTAGAGAGATATATGGAGTGAATCCATGCATCAAGAAGCCTCAAGATGCAAGA
CACATGGTGGGGGACCTAATGGACCTACAGATCATGGTCTCCAACGATTCGAGTGCTTCATTGGAGTTGAAACATATTCTAAAAAATTCAGAGTTTCGGGAGGAATCTGC
TAATAAGACTGCGAGAGTTTTGCATGGTGTGAGTTTTGTCCATGAGCGATCTGCCTGGGGTAAGGGTCCAGAAGATCCAGCGAACCCCCAGCAGAATCATTTGCTGCAGC
AAAACCAGCCGCTGGAGCAAAATGAACAGCAAAATAATCAGGCTGAGAATCCTATCTTGGTAGCTAACGATAGGGTAAATTACATGGATGCTGCCACGTGTCGCGCAGGG
ACTGAGCCGAGAGTTGCGGATATAGTTCGAGAGGAAAATAAGGAGGAAGTTCGAGAAGAAAATACAGAGGAAATTAAAGAACAACTGACTGAGGATGTGCAAGAAGAACA
GGCAGAGGTTGCGCCTGAAAAAGGTAATGAGCCTGTACAGGAGGCTCGAGTAGAGGTGATCATGCCGGAAGTTCCAAAACATCGTTGCTTGAAGCGAAAAGCTGGACGTG
TCAAGGTAGTCCGAACTGATACTCCCTCGCCTCCAACCACTGATTCTGAAAGAGAAAATGCAGAGAGAGAGGAACAGGAGAAAAAAAAGGCCGAGGATAAAGCAAGAGAG
GAAGCAGAGAAAAAGGCGGAAGAAGAAAGATTGATCAAGCAAAGGGCAGACAAGGGCAAGAGTGTTGCTGCGGCATCGGAGGAACCTGACGAGATAAACGAGCCAAAGTT
GTCGTATGTCCGCTTCGTCAACCGTCTTGCCAGGGCAAAGTATGATGAGTTGCTGAAGAGAGACTTCCTGTTCGAAAGAGGATTTAGTGGTGATCTTCCACATTTTCTGA
GGGGTGGCATTACGAACCACGGCTGGGAGTTGTTTTGTTCTAAGCCTGAATCTGTGAACGCGCAGGTCGTGAGCGAGTTTTATGCAAATATTGACGAAGAAGACGGTTTC
CAAGTGATCGTTCGAGGTGTAGAAGTTGACTGGAGTCCTAGTGCTATTAGCGCATTGTATAATCTTCAAGATTTCCCCCACGCAGGATACAATGAGATGGTTGTGGCGCC
ATCTAATGAGCAATTGAGCGATGCTGTGCGGGAAGTTGGCGTTGAAGGGGCGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGGTCGCATTTCATTTTAGCCTTGCCAGAAATGCGGTCGCATTTCTGGGAATTTTTCCAGATTCCTCTGTTTTCTGCAAAACACCAAAACCAAAAACTGATGCGACG
ACACGAAGACTGTGAGTCTCACTGGCTGACGCACAATGTTATTTCCTCTTTTGTGCAAAGCTTGCGGACAACCGTTAGTGTCCTCCCTACTATTCTCCTGGCCAAGAACG
ACTTGTGGAAGTCTATAGAGATAGGGAATGGGAAGGGAATACTTGAAGGATCAAGCTGTAGAGAGATATATGGAGTGAATCCATGCATCAAGAAGCCTCAAGATGCAAGA
CACATGGTGGGGGACCTAATGGACCTACAGATCATGGTCTCCAACGATTCGAGTGCTTCATTGGAGTTGAAACATATTCTAAAAAATTCAGAGTTTCGGGAGGAATCTGC
TAATAAGACTGCGAGAGTTTTGCATGGTGTGAGTTTTGTCCATGAGCGATCTGCCTGGGGTAAGGGTCCAGAAGATCCAGCGAACCCCCAGCAGAATCATTTGCTGCAGC
AAAACCAGCCGCTGGAGCAAAATGAACAGCAAAATAATCAGGCTGAGAATCCTATCTTGGTAGCTAACGATAGGGTAAATTACATGGATGCTGCCACGTGTCGCGCAGGG
ACTGAGCCGAGAGTTGCGGATATAGTTCGAGAGGAAAATAAGGAGGAAGTTCGAGAAGAAAATACAGAGGAAATTAAAGAACAACTGACTGAGGATGTGCAAGAAGAACA
GGCAGAGGTTGCGCCTGAAAAAGGTAATGAGCCTGTACAGGAGGCTCGAGTAGAGGTGATCATGCCGGAAGTTCCAAAACATCGTTGCTTGAAGCGAAAAGCTGGACGTG
TCAAGGTAGTCCGAACTGATACTCCCTCGCCTCCAACCACTGATTCTGAAAGAGAAAATGCAGAGAGAGAGGAACAGGAGAAAAAAAAGGCCGAGGATAAAGCAAGAGAG
GAAGCAGAGAAAAAGGCGGAAGAAGAAAGATTGATCAAGCAAAGGGCAGACAAGGGCAAGAGTGTTGCTGCGGCATCGGAGGAACCTGACGAGATAAACGAGCCAAAGTT
GTCGTATGTCCGCTTCGTCAACCGTCTTGCCAGGGCAAAGTATGATGAGTTGCTGAAGAGAGACTTCCTGTTCGAAAGAGGATTTAGTGGTGATCTTCCACATTTTCTGA
GGGGTGGCATTACGAACCACGGCTGGGAGTTGTTTTGTTCTAAGCCTGAATCTGTGAACGCGCAGGTCGTGAGCGAGTTTTATGCAAATATTGACGAAGAAGACGGTTTC
CAAGTGATCGTTCGAGGTGTAGAAGTTGACTGGAGTCCTAGTGCTATTAGCGCATTGTATAATCTTCAAGATTTCCCCCACGCAGGATACAATGAGATGGTTGTGGCGCC
ATCTAATGAGCAATTGAGCGATGCTGTGCGGGAAGTTGGCGTTGAAGGGGCGTAG
Protein sequenceShow/hide protein sequence
MWSHFILALPEMRSHFWEFFQIPLFSAKHQNQKLMRRHEDCESHWLTHNVISSFVQSLRTTVSVLPTILLAKNDLWKSIEIGNGKGILEGSSCREIYGVNPCIKKPQDAR
HMVGDLMDLQIMVSNDSSASLELKHILKNSEFREESANKTARVLHGVSFVHERSAWGKGPEDPANPQQNHLLQQNQPLEQNEQQNNQAENPILVANDRVNYMDAATCRAG
TEPRVADIVREENKEEVREENTEEIKEQLTEDVQEEQAEVAPEKGNEPVQEARVEVIMPEVPKHRCLKRKAGRVKVVRTDTPSPPTTDSERENAEREEQEKKKAEDKARE
EAEKKAEEERLIKQRADKGKSVAAASEEPDEINEPKLSYVRFVNRLARAKYDELLKRDFLFERGFSGDLPHFLRGGITNHGWELFCSKPESVNAQVVSEFYANIDEEDGF
QVIVRGVEVDWSPSAISALYNLQDFPHAGYNEMVVAPSNEQLSDAVREVGVEGA