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Spg020793 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg020793
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDNA/RNA polymerases superfamily protein
Genome locationscaffold10:29455344..29457431
RNA-Seq ExpressionSpg020793
SyntenySpg020793
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041121.1 hypothetical protein E6C27_scaffold128G00290 [Cucumis melo var. makuwa]4.1e-1742.42Show/hide
Query:  MQSQPLQNQGAKLSTSGFLFGLSYTEGTKRIFEQTRRISGVLWCFEHSG---VYKSNRKLYLVSCRVFETEEFDV-PRGNRSSLQTGELDKT--------
        MQS+PLQN  A ++    LFGLSY EGTK     + ++ G L   +      V+KSN+KLYL      ++ ++D+ PRGNR SLQTGELD T        
Subjt:  MQSQPLQNQGAKLSTSGFLFGLSYTEGTKRIFEQTRRISGVLWCFEHSG---VYKSNRKLYLVSCRVFETEEFDV-PRGNRSSLQTGELDKT--------

Query:  ------------------------------VEIELPVPDTLPTSAESSRTSSRTWVELYIESVHI
                                      VEIELPVPD LPTSAESS ++S TW+ELY ESVH+
Subjt:  ------------------------------VEIELPVPDTLPTSAESSRTSSRTWVELYIESVHI

KAA0053207.1 hypothetical protein E6C27_scaffold1192G00340 [Cucumis melo var. makuwa]4.9e-1841.42Show/hide
Query:  MQSQPLQNQGAKLSTSGFLFGLSYTE--GTKRIFEQTRRISGVLWCFEHSGVYKSNRKLYLVSCRVFETEEF---------------------------D
        MQSQPLQN GA  +   F     ++   G   +F     I           +YK N+KLYLVSC VFE EEF                           +
Subjt:  MQSQPLQNQGAKLSTSGFLFGLSYTE--GTKRIFEQTRRISGVLWCFEHSGVYKSNRKLYLVSCRVFETEEF---------------------------D

Query:  VPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRTSSRTWVELYIESVHI
        +PRGNR SLQTGELDKT                 VEIELP P+ LPTSAESSR++S TW+ELY E VH+
Subjt:  VPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRTSSRTWVELYIESVHI

KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]1.5e-1949.32Show/hide
Query:  MQSQPLQNQGAKLSTSGFLFGLSYTEGTKRIFEQTRR-----ISGVLWCFEHSGVYKSNRKLYLV-SCRVFETEEF--DVPRGNRSSLQTGELDKT----
        MQSQPLQN GA ++    LF LSY EGTK     ++       S  L   E   ++KSN+KLYLV   R+   E     +PRGNR SLQT ELDKT    
Subjt:  MQSQPLQNQGAKLSTSGFLFGLSYTEGTKRIFEQTRR-----ISGVLWCFEHSGVYKSNRKLYLV-SCRVFETEEF--DVPRGNRSSLQTGELDKT----

Query:  -----------VEIELPVPDTLPTSAESSRTSSRTWVELYIESVHI
                   V IELPVPD LPTSAESS ++S TW+ELY ESVH+
Subjt:  -----------VEIELPVPDTLPTSAESSRTSSRTWVELYIESVHI

KAA0066795.1 uncharacterized protein E6C27_scaffold271G001440 [Cucumis melo var. makuwa]1.4e-2053.6Show/hide
Query:  MQSQPLQNQGAKLSTSGFLFGLSYTEGTKRIFEQTRRISGVLW--CFEHSGVYKSNRKLYLVSCRVFETEEFDVPRGNRSSLQTGELDKTVEIELPVPDT
        MQSQPLQN GA ++    LFGLSY E TK     ++    +++        V+KS++KLYLV            PRGNR SLQT ELDKT  IELPVPDT
Subjt:  MQSQPLQNQGAKLSTSGFLFGLSYTEGTKRIFEQTRRISGVLW--CFEHSGVYKSNRKLYLVSCRVFETEEFDVPRGNRSSLQTGELDKTVEIELPVPDT

Query:  LPTSAESSRTSSRTWVELYIESVHI
        LPTSAESS ++S TW+ELY ESVH+
Subjt:  LPTSAESSRTSSRTWVELYIESVHI

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]4.4e-1948.95Show/hide
Query:  MQSQPLQNQGAKLSTSGFLFGLSYTEGTKRIFEQTRR-----ISGVLWCFEHSGVYKSNRKLYLVSCRVFETEEFDVPRGNRSSLQTGELDKTV------
        MQSQPLQN GA ++    LF LSY EGTK     ++      +S  L   E   ++K N+KLYL             PRGNR SLQTGELDKTV      
Subjt:  MQSQPLQNQGAKLSTSGFLFGLSYTEGTKRIFEQTRR-----ISGVLWCFEHSGVYKSNRKLYLVSCRVFETEEFDVPRGNRSSLQTGELDKTV------

Query:  ---------EIELPVPDTLPTSAESSRTSSRTWVELYIESVHI
                  IELPVPDTLPTSAESS ++S TW+ELY ESVH+
Subjt:  ---------EIELPVPDTLPTSAESSRTSSRTWVELYIESVHI

TrEMBL top hitse value%identityAlignment
A0A5A7THH5 Uncharacterized protein2.0e-1742.42Show/hide
Query:  MQSQPLQNQGAKLSTSGFLFGLSYTEGTKRIFEQTRRISGVLWCFEHSG---VYKSNRKLYLVSCRVFETEEFDV-PRGNRSSLQTGELDKT--------
        MQS+PLQN  A ++    LFGLSY EGTK     + ++ G L   +      V+KSN+KLYL      ++ ++D+ PRGNR SLQTGELD T        
Subjt:  MQSQPLQNQGAKLSTSGFLFGLSYTEGTKRIFEQTRRISGVLWCFEHSG---VYKSNRKLYLVSCRVFETEEFDV-PRGNRSSLQTGELDKT--------

Query:  ------------------------------VEIELPVPDTLPTSAESSRTSSRTWVELYIESVHI
                                      VEIELPVPD LPTSAESS ++S TW+ELY ESVH+
Subjt:  ------------------------------VEIELPVPDTLPTSAESSRTSSRTWVELYIESVHI

A0A5A7UFD2 Uncharacterized protein2.4e-1841.42Show/hide
Query:  MQSQPLQNQGAKLSTSGFLFGLSYTE--GTKRIFEQTRRISGVLWCFEHSGVYKSNRKLYLVSCRVFETEEF---------------------------D
        MQSQPLQN GA  +   F     ++   G   +F     I           +YK N+KLYLVSC VFE EEF                           +
Subjt:  MQSQPLQNQGAKLSTSGFLFGLSYTE--GTKRIFEQTRRISGVLWCFEHSGVYKSNRKLYLVSCRVFETEEF---------------------------D

Query:  VPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRTSSRTWVELYIESVHI
        +PRGNR SLQTGELDKT                 VEIELP P+ LPTSAESSR++S TW+ELY E VH+
Subjt:  VPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRTSSRTWVELYIESVHI

A0A5A7UT17 CCHC-type domain-containing protein7.3e-2049.32Show/hide
Query:  MQSQPLQNQGAKLSTSGFLFGLSYTEGTKRIFEQTRR-----ISGVLWCFEHSGVYKSNRKLYLV-SCRVFETEEF--DVPRGNRSSLQTGELDKT----
        MQSQPLQN GA ++    LF LSY EGTK     ++       S  L   E   ++KSN+KLYLV   R+   E     +PRGNR SLQT ELDKT    
Subjt:  MQSQPLQNQGAKLSTSGFLFGLSYTEGTKRIFEQTRR-----ISGVLWCFEHSGVYKSNRKLYLV-SCRVFETEEF--DVPRGNRSSLQTGELDKT----

Query:  -----------VEIELPVPDTLPTSAESSRTSSRTWVELYIESVHI
                   V IELPVPD LPTSAESS ++S TW+ELY ESVH+
Subjt:  -----------VEIELPVPDTLPTSAESSRTSSRTWVELYIESVHI

A0A5D3CJX3 CCHC-type domain-containing protein2.1e-1948.95Show/hide
Query:  MQSQPLQNQGAKLSTSGFLFGLSYTEGTKRIFEQTRR-----ISGVLWCFEHSGVYKSNRKLYLVSCRVFETEEFDVPRGNRSSLQTGELDKTV------
        MQSQPLQN GA ++    LF LSY EGTK     ++      +S  L   E   ++K N+KLYL             PRGNR SLQTGELDKTV      
Subjt:  MQSQPLQNQGAKLSTSGFLFGLSYTEGTKRIFEQTRR-----ISGVLWCFEHSGVYKSNRKLYLVSCRVFETEEFDVPRGNRSSLQTGELDKTV------

Query:  ---------EIELPVPDTLPTSAESSRTSSRTWVELYIESVHI
                  IELPVPDTLPTSAESS ++S TW+ELY ESVH+
Subjt:  ---------EIELPVPDTLPTSAESSRTSSRTWVELYIESVHI

A0A5D3DWP3 Uncharacterized protein6.6e-2153.6Show/hide
Query:  MQSQPLQNQGAKLSTSGFLFGLSYTEGTKRIFEQTRRISGVLW--CFEHSGVYKSNRKLYLVSCRVFETEEFDVPRGNRSSLQTGELDKTVEIELPVPDT
        MQSQPLQN GA ++    LFGLSY E TK     ++    +++        V+KS++KLYLV            PRGNR SLQT ELDKT  IELPVPDT
Subjt:  MQSQPLQNQGAKLSTSGFLFGLSYTEGTKRIFEQTRRISGVLW--CFEHSGVYKSNRKLYLVSCRVFETEEFDVPRGNRSSLQTGELDKTVEIELPVPDT

Query:  LPTSAESSRTSSRTWVELYIESVHI
        LPTSAESS ++S TW+ELY ESVH+
Subjt:  LPTSAESSRTSSRTWVELYIESVHI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAAGCCAGCCATTGCAGAATCAGGGTGCAAAACTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTATACAGAAGGAACTAAGAGGATTTTCGAGCAAACCAGGAG
GATCTCTGGTGTTCTATGGTGTTTTGAGCATTCTGGGGTGTACAAGTCGAATCGGAAGCTCTATTTGGTAAGTTGTAGAGTGTTCGAAACTGAAGAGTTTGATGTGCCAA
GAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGTTCC
CGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCAAAGCCAGCCATTGCAGAATCAGGGTGCAAAACTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTATACAGAAGGAACTAAGAGGATTTTCGAGCAAACCAGGAG
GATCTCTGGTGTTCTATGGTGTTTTGAGCATTCTGGGGTGTACAAGTCGAATCGGAAGCTCTATTTGGTAAGTTGTAGAGTGTTCGAAACTGAAGAGTTTGATGTGCCAA
GAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGTTCC
CGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTAA
Protein sequenceShow/hide protein sequence
MQSQPLQNQGAKLSTSGFLFGLSYTEGTKRIFEQTRRISGVLWCFEHSGVYKSNRKLYLVSCRVFETEEFDVPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRTSS
RTWVELYIESVHIVNVL