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Spg020810 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg020810
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold10:29067210..29068814
RNA-Seq ExpressionSpg020810
SyntenySpg020810
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]8.1e-1337Show/hide
Query:  LCSRDFWTNPLGISFSFLHSEARWYRV----------------------HTGYILLLMLSVLRDNDAVVSGGQAPLRKDDESAGRAPLHRRASKCWLYWA
        LCS  FW N L ISFSFL       R+                       T    L  LSVL DNDAVVS GQAPLR+           RR       W 
Subjt:  LCSRDFWTNPLGISFSFLHSEARWYRV----------------------HTGYILLLMLSVLRDNDAVVSGGQAPLRKDDESAGRAPLHRRASKCWLYWA

Query:  CPT-------PCRSVMLVEIELPVPDTLPKSAKSFP------IKLQYVGGVVRRVCSTVQQGQQVS---------LEEDDVRWLHAIFRTKLAGSSGGGV
        C T          S  LVEIELPVPD LP SA+S        ++L +    V      + Q ++           +  DDV WLHAIFR K AG  GGGV
Subjt:  CPT-------PCRSVMLVEIELPVPDTLPKSAKSFP------IKLQYVGGVVRRVCSTVQQGQQVS---------LEEDDVRWLHAIFRTKLAGSSGGGV

KAA0041324.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.1e-1370.49Show/hide
Query:  GYILLLMLSVLRDNDAVVSGGQAPLRKDDESAGRAPLHRRASKCWLYWACPTPCRSVMLVE
        GYI LL LSVLRDN+ VVS  + PL KDD SAGR PLHRR SK WLYWACPT    VMLV+
Subjt:  GYILLLMLSVLRDNDAVVSGGQAPLRKDDESAGRAPLHRRASKCWLYWACPTPCRSVMLVE

KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]2.5e-2253.38Show/hide
Query:  LLMLSVLRDNDAVVSGGQAPLRKDDESAGRAPLHRRASKCWLYWACPTPCRSVML----------VEIELPVPDTLPKSAKSFPIKLQYVGGVVRRVCST
        L  LSVLRDNDAVVS G     KDD +A RAPLHRR SK WLYWACPTP RSVML          VEIEL VPDTLP SA+S     +   G+VR     
Subjt:  LLMLSVLRDNDAVVSGGQAPLRKDDESAGRAPLHRRASKCWLYWACPTPCRSVML----------VEIELPVPDTLPKSAKSFPIKLQYVGGVVRRVCST

Query:  VQQGQQVSLEEDDVRWLHAIFRTKLAGSSGGGV
                   DDV WLH +FR K  G  GG V
Subjt:  VQQGQQVSLEEDDVRWLHAIFRTKLAGSSGGGV

TYJ98800.1 uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa]2.5e-2253.38Show/hide
Query:  LLMLSVLRDNDAVVSGGQAPLRKDDESAGRAPLHRRASKCWLYWACPTPCRSVML----------VEIELPVPDTLPKSAKSFPIKLQYVGGVVRRVCST
        L  LSVLRDNDAVVS G     KDD +A RAPLHRR SK WLYWACPTP RSVML          VEIEL VPDTLP SA+S     +   G+VR     
Subjt:  LLMLSVLRDNDAVVSGGQAPLRKDDESAGRAPLHRRASKCWLYWACPTPCRSVML----------VEIELPVPDTLPKSAKSFPIKLQYVGGVVRRVCST

Query:  VQQGQQVSLEEDDVRWLHAIFRTKLAGSSGGGV
                   DDV WLH +FR K  G  GG V
Subjt:  VQQGQQVSLEEDDVRWLHAIFRTKLAGSSGGGV

TYK02787.1 RVT_1 domain-containing protein/zf-CCHC domain-containing protein/RVP_2 domain-containing protein [Cucumis melo var. makuwa]5.1e-1566.18Show/hide
Query:  RWYRVHTGYILLLMLSVLRDNDAVVSGGQAPLRKDDESAGRAPLHRRASKCWLYWACPTPCRSVMLVE
        R YRVHT YI LL LSVLRDN+ ++S  + PL KDD SAGR PLHRR SK WLYWAC T    VMLV+
Subjt:  RWYRVHTGYILLLMLSVLRDNDAVVSGGQAPLRKDDESAGRAPLHRRASKCWLYWACPTPCRSVMLVE

TrEMBL top hitse value%identityAlignment
A0A5A7TCY8 DNA/RNA polymerases superfamily protein1.0e-1370.49Show/hide
Query:  GYILLLMLSVLRDNDAVVSGGQAPLRKDDESAGRAPLHRRASKCWLYWACPTPCRSVMLVE
        GYI LL LSVLRDN+ VVS  + PL KDD SAGR PLHRR SK WLYWACPT    VMLV+
Subjt:  GYILLLMLSVLRDNDAVVSGGQAPLRKDDESAGRAPLHRRASKCWLYWACPTPCRSVMLVE

A0A5A7VGQ5 Uncharacterized protein1.2e-2253.38Show/hide
Query:  LLMLSVLRDNDAVVSGGQAPLRKDDESAGRAPLHRRASKCWLYWACPTPCRSVML----------VEIELPVPDTLPKSAKSFPIKLQYVGGVVRRVCST
        L  LSVLRDNDAVVS G     KDD +A RAPLHRR SK WLYWACPTP RSVML          VEIEL VPDTLP SA+S     +   G+VR     
Subjt:  LLMLSVLRDNDAVVSGGQAPLRKDDESAGRAPLHRRASKCWLYWACPTPCRSVML----------VEIELPVPDTLPKSAKSFPIKLQYVGGVVRRVCST

Query:  VQQGQQVSLEEDDVRWLHAIFRTKLAGSSGGGV
                   DDV WLH +FR K  G  GG V
Subjt:  VQQGQQVSLEEDDVRWLHAIFRTKLAGSSGGGV

A0A5D3BG85 Uncharacterized protein1.2e-2253.38Show/hide
Query:  LLMLSVLRDNDAVVSGGQAPLRKDDESAGRAPLHRRASKCWLYWACPTPCRSVML----------VEIELPVPDTLPKSAKSFPIKLQYVGGVVRRVCST
        L  LSVLRDNDAVVS G     KDD +A RAPLHRR SK WLYWACPTP RSVML          VEIEL VPDTLP SA+S     +   G+VR     
Subjt:  LLMLSVLRDNDAVVSGGQAPLRKDDESAGRAPLHRRASKCWLYWACPTPCRSVML----------VEIELPVPDTLPKSAKSFPIKLQYVGGVVRRVCST

Query:  VQQGQQVSLEEDDVRWLHAIFRTKLAGSSGGGV
                   DDV WLH +FR K  G  GG V
Subjt:  VQQGQQVSLEEDDVRWLHAIFRTKLAGSSGGGV

A0A5D3BTJ5 RVT_1 domain-containing protein/zf-CCHC domain-containing protein/RVP_2 domain-containing protein2.5e-1566.18Show/hide
Query:  RWYRVHTGYILLLMLSVLRDNDAVVSGGQAPLRKDDESAGRAPLHRRASKCWLYWACPTPCRSVMLVE
        R YRVHT YI LL LSVLRDN+ ++S  + PL KDD SAGR PLHRR SK WLYWAC T    VMLV+
Subjt:  RWYRVHTGYILLLMLSVLRDNDAVVSGGQAPLRKDDESAGRAPLHRRASKCWLYWACPTPCRSVMLVE

A0A5D3BTP3 Reverse transcriptase3.9e-1337Show/hide
Query:  LCSRDFWTNPLGISFSFLHSEARWYRV----------------------HTGYILLLMLSVLRDNDAVVSGGQAPLRKDDESAGRAPLHRRASKCWLYWA
        LCS  FW N L ISFSFL       R+                       T    L  LSVL DNDAVVS GQAPLR+           RR       W 
Subjt:  LCSRDFWTNPLGISFSFLHSEARWYRV----------------------HTGYILLLMLSVLRDNDAVVSGGQAPLRKDDESAGRAPLHRRASKCWLYWA

Query:  CPT-------PCRSVMLVEIELPVPDTLPKSAKSFP------IKLQYVGGVVRRVCSTVQQGQQVS---------LEEDDVRWLHAIFRTKLAGSSGGGV
        C T          S  LVEIELPVPD LP SA+S        ++L +    V      + Q ++           +  DDV WLHAIFR K AG  GGGV
Subjt:  CPT-------PCRSVMLVEIELPVPDTLPKSAKSFP------IKLQYVGGVVRRVCSTVQQGQQVS---------LEEDDVRWLHAIFRTKLAGSSGGGV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATCTGGATTTGCTGTGTTCGAGGGATTTCTGGACAAATCCGTTGGGAATCTCATTTTCATTCCTTCACAGCGAGGCTAGGTGGTACCGTGTGCACACAGGTTATAT
TCTGTTGTTGATGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGGTGGGCAGGCCCCACTACGCAAAGACGATGAGAGTGCTGGGCGGGCTCCACTACATCGTA
GAGCTAGTAAATGTTGGTTGTACTGGGCGTGCCCTACACCATGTAGATCTGTCATGTTAGTAGAGATCGAGCTCCCGGTGCCTGATACGCTGCCAAAGTCTGCTAAAAGC
TTCCCGATCAAGCTCCAGTACGTGGGTGGAGTTGTACGTCGAGTCTGTTCAACGGTTCAGCAGGGTCAACAGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGC
TATCTTCCGGACTAAGCTAGCAGGTAGTTCGGGAGGGGGCGTGATAAGAGGCGTCAATTCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAATCTGGATTTGCTGTGTTCGAGGGATTTCTGGACAAATCCGTTGGGAATCTCATTTTCATTCCTTCACAGCGAGGCTAGGTGGTACCGTGTGCACACAGGTTATAT
TCTGTTGTTGATGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGGTGGGCAGGCCCCACTACGCAAAGACGATGAGAGTGCTGGGCGGGCTCCACTACATCGTA
GAGCTAGTAAATGTTGGTTGTACTGGGCGTGCCCTACACCATGTAGATCTGTCATGTTAGTAGAGATCGAGCTCCCGGTGCCTGATACGCTGCCAAAGTCTGCTAAAAGC
TTCCCGATCAAGCTCCAGTACGTGGGTGGAGTTGTACGTCGAGTCTGTTCAACGGTTCAGCAGGGTCAACAGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGC
TATCTTCCGGACTAAGCTAGCAGGTAGTTCGGGAGGGGGCGTGATAAGAGGCGTCAATTCTTAA
Protein sequenceShow/hide protein sequence
MNLDLLCSRDFWTNPLGISFSFLHSEARWYRVHTGYILLLMLSVLRDNDAVVSGGQAPLRKDDESAGRAPLHRRASKCWLYWACPTPCRSVMLVEIELPVPDTLPKSAKS
FPIKLQYVGGVVRRVCSTVQQGQQVSLEEDDVRWLHAIFRTKLAGSSGGGVIRGVNS