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Spg020825 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg020825
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCysteinyl-tRNA synthetase
Genome locationscaffold10:28411338..28416485
RNA-Seq ExpressionSpg020825
SyntenySpg020825
Gene Ontology termsGO:0006423 - cysteinyl-tRNA aminoacylation (biological process)
GO:0016310 - phosphorylation (biological process)
GO:0005829 - cytosol (cellular component)
GO:0004817 - cysteine-tRNA ligase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0016301 - kinase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR014729 - Rossmann-like alpha/beta/alpha sandwich fold
IPR024909 - Cysteinyl-tRNA synthetase/mycothiol ligase
IPR032678 - tRNA synthetases class I, catalytic domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN51154.2 hypothetical protein Csa_023165 [Cucumis sativus]1.2e-2294.74Show/hide
Query:  MAKEEFRVYNSMTQQKEIFTPKEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYRF
        MAKEEFRVYNSMTQQKE+FT KEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYR+
Subjt:  MAKEEFRVYNSMTQQKEIFTPKEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYRF

XP_004150192.2 LOW QUALITY PROTEIN: cysteine--tRNA ligase 2, cytoplasmic [Cucumis sativus]1.2e-2294.74Show/hide
Query:  MAKEEFRVYNSMTQQKEIFTPKEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYRF
        MAKEEFRVYNSMTQQKE+FT KEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYR+
Subjt:  MAKEEFRVYNSMTQQKEIFTPKEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYRF

XP_008465226.2 PREDICTED: LOW QUALITY PROTEIN: cysteine--tRNA ligase 2, cytoplasmic-like [Cucumis melo]1.2e-2294.74Show/hide
Query:  MAKEEFRVYNSMTQQKEIFTPKEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYRF
        MAKEEFRVYNSMTQQKE+FT KEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYR+
Subjt:  MAKEEFRVYNSMTQQKEIFTPKEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYRF

XP_022152314.1 cysteine--tRNA ligase 2, cytoplasmic [Momordica charantia]7.1e-2390Show/hide
Query:  MAKEEFRVYNSMTQQKEIFTPKEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYRFADF
        MAKEEFRVYNSMTQQKE+FT KEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYR+  +
Subjt:  MAKEEFRVYNSMTQQKEIFTPKEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYRFADF

XP_038907150.1 cysteine--tRNA ligase 2, cytoplasmic [Benincasa hispida]1.4e-2396.49Show/hide
Query:  MAKEEFRVYNSMTQQKEIFTPKEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYRF
        MAKEEFRVYNSMTQQKE+FTPKEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYR+
Subjt:  MAKEEFRVYNSMTQQKEIFTPKEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYRF

TrEMBL top hitse value%identityAlignment
A0A1S3CNS9 Cysteinyl-tRNA synthetase5.8e-2394.74Show/hide
Query:  MAKEEFRVYNSMTQQKEIFTPKEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYRF
        MAKEEFRVYNSMTQQKE+FT KEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYR+
Subjt:  MAKEEFRVYNSMTQQKEIFTPKEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYRF

A0A5D3CTE4 Cysteinyl-tRNA synthetase5.8e-2394.74Show/hide
Query:  MAKEEFRVYNSMTQQKEIFTPKEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYRF
        MAKEEFRVYNSMTQQKE+FT KEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYR+
Subjt:  MAKEEFRVYNSMTQQKEIFTPKEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYRF

A0A6J1DFN5 Cysteinyl-tRNA synthetase3.4e-2390Show/hide
Query:  MAKEEFRVYNSMTQQKEIFTPKEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYRFADF
        MAKEEFRVYNSMTQQKE+FT KEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYR+  +
Subjt:  MAKEEFRVYNSMTQQKEIFTPKEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYRFADF

A0A6J1EQN5 Cysteinyl-tRNA synthetase5.8e-2394.74Show/hide
Query:  MAKEEFRVYNSMTQQKEIFTPKEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYRF
        MAKEEFRVYNSMTQQKE+FT KEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYR+
Subjt:  MAKEEFRVYNSMTQQKEIFTPKEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYRF

A0A6J1I7Y5 Cysteinyl-tRNA synthetase5.8e-2394.74Show/hide
Query:  MAKEEFRVYNSMTQQKEIFTPKEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYRF
        MAKEEFRVYNSMTQQKE+FT KEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYR+
Subjt:  MAKEEFRVYNSMTQQKEIFTPKEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYRF

SwissProt top hitse value%identityAlignment
A1VDQ5 Cysteine--tRNA ligase7.3e-1568.63Show/hide
Query:  RVYNSMTQQKEIFTPKEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYRF
        ++YNS++++KE+FTP  PGKV MYVCGITAYD  HIGHAR+AV FDVL R+
Subjt:  RVYNSMTQQKEIFTPKEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYRF

B3LFA4 Cysteine--tRNA ligase 2, cytoplasmic8.4e-1974.55Show/hide
Query:  KEEFRVYNSMTQQKEIFTPKEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYRF
        K E ++YN+MTQQKE+  P  PGK+G+YVCGITAYDFSHIGHARAAV+FDVLYR+
Subjt:  KEEFRVYNSMTQQKEIFTPKEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYRF

Q3A8C9 Cysteine--tRNA ligase6.6e-1666.67Show/hide
Query:  RVYNSMTQQKEIFTPKEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYRFADF
        RVYN+MT +KE F P +PGKVGMYVCG+T YD+ HIGHARA V FD++YR+  F
Subjt:  RVYNSMTQQKEIFTPKEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYRFADF

Q72BQ5 Cysteine--tRNA ligase7.3e-1568.63Show/hide
Query:  RVYNSMTQQKEIFTPKEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYRF
        ++YNS++++KE+FTP  PGKV MYVCGITAYD  HIGHAR+AV FDVL R+
Subjt:  RVYNSMTQQKEIFTPKEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYRF

Q9LYL3 Cysteine--tRNA ligase 1, cytoplasmic2.7e-1767.27Show/hide
Query:  KEEFRVYNSMTQQKEIFTPKEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYRF
        K +  +YN+MTQ KE++ P  PGK+G+YVCGITAYD+SHIGHARAAV+FD+LYR+
Subjt:  KEEFRVYNSMTQQKEIFTPKEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYRF

Arabidopsis top hitse value%identityAlignment
AT2G31170.1 Cysteinyl-tRNA synthetase, class Ia family protein3.4e-1562.96Show/hide
Query:  EEFRVYNSMTQQKEIFTPKEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYRF
        +E  ++N+M+++KE+F PK  GKVGMYVCG+TAYD SHIGHAR  V FDVL R+
Subjt:  EEFRVYNSMTQQKEIFTPKEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYRF

AT3G56300.1 Cysteinyl-tRNA synthetase, class Ia family protein1.9e-1867.27Show/hide
Query:  KEEFRVYNSMTQQKEIFTPKEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYRF
        K +  +YN+MTQ KE++ P  PGK+G+YVCGITAYD+SHIGHARAAV+FD+LYR+
Subjt:  KEEFRVYNSMTQQKEIFTPKEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYRF

AT5G38830.1 Cysteinyl-tRNA synthetase, class Ia family protein6.0e-2074.55Show/hide
Query:  KEEFRVYNSMTQQKEIFTPKEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYRF
        K E ++YN+MTQQKE+  P  PGK+G+YVCGITAYDFSHIGHARAAV+FDVLYR+
Subjt:  KEEFRVYNSMTQQKEIFTPKEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYRF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGACCTTTCTTTCCAGTTCAGTCATTCTTTCTTCGCTTGTACCTATGTCGACCATCATTACAGACATCACGTCAGGATCTGATGTCTCCTTTGCCTGCTCAGAAGA
TGAAAGGCTTGTTCTTCTTCTGATTTCTGGATTTCCTTGGAGCGTCCGCGATCTCACTCTTCTCGCCGTCGCCGACGCCGGCGCCGGCTCCCCCTTCCTTTTAGCAGCTC
TCGCCGCCCCGCCATTTATCTCCTGCCCGTGCCGCCGCCGCCGTCCCTCTCCTGATCGTGCTGACGCCGCCGCCTTCCTCCTAGCAGTTTGCACTGTTTTTCTATCTCTT
GTTACTGGTATGCTCTCAATCTCCATCTATGTCTTTCTTCTCGCTTCCCGATTGAATCGACCGACTAGAACAACTCAATTAGGACTTGCGAATGAAAGTGATGTGGAGTT
GCTTGACAGAACAGCCTCACCATTGATGAGATTCAGTTTCTTGCCTGCCGTCGGAATGGCGAAGGAGGAATTTAGGGTTTACAATTCGATGACGCAGCAGAAGGAAATCT
TCACGCCGAAGGAGCCTGGTAAGGTTGGCATGTACGTCTGTGGCATCACGGCCTATGATTTCAGCCACATTGGTCATGCTCGCGCCGCCGTCAACTTTGACGTCCTCTAC
AGGTTTGCTGATTTCTGCATTCGTATCTCTATACGCAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTGACCTTTCTTTCCAGTTCAGTCATTCTTTCTTCGCTTGTACCTATGTCGACCATCATTACAGACATCACGTCAGGATCTGATGTCTCCTTTGCCTGCTCAGAAGA
TGAAAGGCTTGTTCTTCTTCTGATTTCTGGATTTCCTTGGAGCGTCCGCGATCTCACTCTTCTCGCCGTCGCCGACGCCGGCGCCGGCTCCCCCTTCCTTTTAGCAGCTC
TCGCCGCCCCGCCATTTATCTCCTGCCCGTGCCGCCGCCGCCGTCCCTCTCCTGATCGTGCTGACGCCGCCGCCTTCCTCCTAGCAGTTTGCACTGTTTTTCTATCTCTT
GTTACTGGTATGCTCTCAATCTCCATCTATGTCTTTCTTCTCGCTTCCCGATTGAATCGACCGACTAGAACAACTCAATTAGGACTTGCGAATGAAAGTGATGTGGAGTT
GCTTGACAGAACAGCCTCACCATTGATGAGATTCAGTTTCTTGCCTGCCGTCGGAATGGCGAAGGAGGAATTTAGGGTTTACAATTCGATGACGCAGCAGAAGGAAATCT
TCACGCCGAAGGAGCCTGGTAAGGTTGGCATGTACGTCTGTGGCATCACGGCCTATGATTTCAGCCACATTGGTCATGCTCGCGCCGCCGTCAACTTTGACGTCCTCTAC
AGGTTTGCTGATTTCTGCATTCGTATCTCTATACGCAAGTGA
Protein sequenceShow/hide protein sequence
MLTFLSSSVILSSLVPMSTIITDITSGSDVSFACSEDERLVLLLISGFPWSVRDLTLLAVADAGAGSPFLLAALAAPPFISCPCRRRRPSPDRADAAAFLLAVCTVFLSL
VTGMLSISIYVFLLASRLNRPTRTTQLGLANESDVELLDRTASPLMRFSFLPAVGMAKEEFRVYNSMTQQKEIFTPKEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLY
RFADFCIRISIRK