; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg020841 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg020841
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionsyndetin isoform X1
Genome locationscaffold10:29458030..29460722
RNA-Seq ExpressionSpg020841
SyntenySpg020841
Gene Ontology termsGO:0032456 - endocytic recycling (biological process)
GO:0042147 - retrograde transport, endosome to Golgi (biological process)
GO:0005829 - cytosol (cellular component)
GO:1990745 - EARP complex (cellular component)
InterPro domainsIPR040047 - Syndetin


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008462106.1 PREDICTED: syndetin [Cucumis melo]1.7e-6583.55Show/hide
Query:  MKQREDNYNLNLGETEESMTNVSSIGTTGIMNSVYMDGGDPNRESRADSSTASTSGSPWYHLKKDAISFISQTLQRGRKNLWQLTTSRVSVLLSSAAVCS
        MK +EDNY++ LG++EES  +VSS+G+TGI +S+YMD GD  RESR DSS ASTSGSPWYHL+KDAI F+SQTLQRGRKNLWQLTTSRVSVLLSSAAVCS
Subjt:  MKQREDNYNLNLGETEESMTNVSSIGTTGIMNSVYMDGGDPNRESRADSSTASTSGSPWYHLKKDAISFISQTLQRGRKNLWQLTTSRVSVLLSSAAVCS

Query:  TSIHQFLKNYEDLNVFLLAGEAFCGVEAVEFRQKLKVVCENYYVAFHKQSMH
        TSIHQFLKNYEDLNVF+LAGEAFCGVEAVEFRQKLK+VCENYYVAFHKQSMH
Subjt:  TSIHQFLKNYEDLNVFLLAGEAFCGVEAVEFRQKLKVVCENYYVAFHKQSMH

XP_022152900.1 syndetin isoform X1 [Momordica charantia]1.5e-6989.47Show/hide
Query:  MKQREDNYNLNLGETEESMTNVSSIGTTGIMNSVYMDGGDPNRESRADSSTASTSGSPWYHLKKDAISFISQTLQRGRKNLWQLTTSRVSVLLSSAAVCS
        MKQ++D+Y LNLG+TEE  TNVSS+GTTGIMNSVYMD  DP+RESR DSSTASTSGSPWYHL+KDAISF+SQTLQRGRKNLWQLTTSRVSVLLSSAAVCS
Subjt:  MKQREDNYNLNLGETEESMTNVSSIGTTGIMNSVYMDGGDPNRESRADSSTASTSGSPWYHLKKDAISFISQTLQRGRKNLWQLTTSRVSVLLSSAAVCS

Query:  TSIHQFLKNYEDLNVFLLAGEAFCGVEAVEFRQKLKVVCENYYVAFHKQSMH
        TSIHQFLKNYEDLNVF+LAGEAFCGVEAVEFRQKLK VCENYYVAFHKQSMH
Subjt:  TSIHQFLKNYEDLNVFLLAGEAFCGVEAVEFRQKLKVVCENYYVAFHKQSMH

XP_022152901.1 syndetin isoform X2 [Momordica charantia]1.5e-6989.47Show/hide
Query:  MKQREDNYNLNLGETEESMTNVSSIGTTGIMNSVYMDGGDPNRESRADSSTASTSGSPWYHLKKDAISFISQTLQRGRKNLWQLTTSRVSVLLSSAAVCS
        MKQ++D+Y LNLG+TEE  TNVSS+GTTGIMNSVYMD  DP+RESR DSSTASTSGSPWYHL+KDAISF+SQTLQRGRKNLWQLTTSRVSVLLSSAAVCS
Subjt:  MKQREDNYNLNLGETEESMTNVSSIGTTGIMNSVYMDGGDPNRESRADSSTASTSGSPWYHLKKDAISFISQTLQRGRKNLWQLTTSRVSVLLSSAAVCS

Query:  TSIHQFLKNYEDLNVFLLAGEAFCGVEAVEFRQKLKVVCENYYVAFHKQSMH
        TSIHQFLKNYEDLNVF+LAGEAFCGVEAVEFRQKLK VCENYYVAFHKQSMH
Subjt:  TSIHQFLKNYEDLNVFLLAGEAFCGVEAVEFRQKLKVVCENYYVAFHKQSMH

XP_038895533.1 syndetin isoform X1 [Benincasa hispida]5.6e-6988.16Show/hide
Query:  MKQREDNYNLNLGETEESMTNVSSIGTTGIMNSVYMDGGDPNRESRADSSTASTSGSPWYHLKKDAISFISQTLQRGRKNLWQLTTSRVSVLLSSAAVCS
        MKQ EDN+++NLG+TEE   NVSS+G+TGI NSVYMDGGD NRESR DSSTASTSGSPWYHL+KDAI F+SQTLQRGRKNLWQLTTSRVSVLLSSAAVCS
Subjt:  MKQREDNYNLNLGETEESMTNVSSIGTTGIMNSVYMDGGDPNRESRADSSTASTSGSPWYHLKKDAISFISQTLQRGRKNLWQLTTSRVSVLLSSAAVCS

Query:  TSIHQFLKNYEDLNVFLLAGEAFCGVEAVEFRQKLKVVCENYYVAFHKQSMH
        TSIHQFLKNYEDLNVF+LAGEAFCGVEAVEFRQKLK VCENYYVAFHKQSMH
Subjt:  TSIHQFLKNYEDLNVFLLAGEAFCGVEAVEFRQKLKVVCENYYVAFHKQSMH

XP_038895534.1 syndetin isoform X2 [Benincasa hispida]5.6e-6988.16Show/hide
Query:  MKQREDNYNLNLGETEESMTNVSSIGTTGIMNSVYMDGGDPNRESRADSSTASTSGSPWYHLKKDAISFISQTLQRGRKNLWQLTTSRVSVLLSSAAVCS
        MKQ EDN+++NLG+TEE   NVSS+G+TGI NSVYMDGGD NRESR DSSTASTSGSPWYHL+KDAI F+SQTLQRGRKNLWQLTTSRVSVLLSSAAVCS
Subjt:  MKQREDNYNLNLGETEESMTNVSSIGTTGIMNSVYMDGGDPNRESRADSSTASTSGSPWYHLKKDAISFISQTLQRGRKNLWQLTTSRVSVLLSSAAVCS

Query:  TSIHQFLKNYEDLNVFLLAGEAFCGVEAVEFRQKLKVVCENYYVAFHKQSMH
        TSIHQFLKNYEDLNVF+LAGEAFCGVEAVEFRQKLK VCENYYVAFHKQSMH
Subjt:  TSIHQFLKNYEDLNVFLLAGEAFCGVEAVEFRQKLKVVCENYYVAFHKQSMH

TrEMBL top hitse value%identityAlignment
A0A1S3CG39 syndetin8.1e-6683.55Show/hide
Query:  MKQREDNYNLNLGETEESMTNVSSIGTTGIMNSVYMDGGDPNRESRADSSTASTSGSPWYHLKKDAISFISQTLQRGRKNLWQLTTSRVSVLLSSAAVCS
        MK +EDNY++ LG++EES  +VSS+G+TGI +S+YMD GD  RESR DSS ASTSGSPWYHL+KDAI F+SQTLQRGRKNLWQLTTSRVSVLLSSAAVCS
Subjt:  MKQREDNYNLNLGETEESMTNVSSIGTTGIMNSVYMDGGDPNRESRADSSTASTSGSPWYHLKKDAISFISQTLQRGRKNLWQLTTSRVSVLLSSAAVCS

Query:  TSIHQFLKNYEDLNVFLLAGEAFCGVEAVEFRQKLKVVCENYYVAFHKQSMH
        TSIHQFLKNYEDLNVF+LAGEAFCGVEAVEFRQKLK+VCENYYVAFHKQSMH
Subjt:  TSIHQFLKNYEDLNVFLLAGEAFCGVEAVEFRQKLKVVCENYYVAFHKQSMH

A0A5A7VC68 Syndetin8.1e-6683.55Show/hide
Query:  MKQREDNYNLNLGETEESMTNVSSIGTTGIMNSVYMDGGDPNRESRADSSTASTSGSPWYHLKKDAISFISQTLQRGRKNLWQLTTSRVSVLLSSAAVCS
        MK +EDNY++ LG++EES  +VSS+G+TGI +S+YMD GD  RESR DSS ASTSGSPWYHL+KDAI F+SQTLQRGRKNLWQLTTSRVSVLLSSAAVCS
Subjt:  MKQREDNYNLNLGETEESMTNVSSIGTTGIMNSVYMDGGDPNRESRADSSTASTSGSPWYHLKKDAISFISQTLQRGRKNLWQLTTSRVSVLLSSAAVCS

Query:  TSIHQFLKNYEDLNVFLLAGEAFCGVEAVEFRQKLKVVCENYYVAFHKQSMH
        TSIHQFLKNYEDLNVF+LAGEAFCGVEAVEFRQKLK+VCENYYVAFHKQSMH
Subjt:  TSIHQFLKNYEDLNVFLLAGEAFCGVEAVEFRQKLKVVCENYYVAFHKQSMH

A0A5D3CVZ5 Syndetin8.1e-6683.55Show/hide
Query:  MKQREDNYNLNLGETEESMTNVSSIGTTGIMNSVYMDGGDPNRESRADSSTASTSGSPWYHLKKDAISFISQTLQRGRKNLWQLTTSRVSVLLSSAAVCS
        MK +EDNY++ LG++EES  +VSS+G+TGI +S+YMD GD  RESR DSS ASTSGSPWYHL+KDAI F+SQTLQRGRKNLWQLTTSRVSVLLSSAAVCS
Subjt:  MKQREDNYNLNLGETEESMTNVSSIGTTGIMNSVYMDGGDPNRESRADSSTASTSGSPWYHLKKDAISFISQTLQRGRKNLWQLTTSRVSVLLSSAAVCS

Query:  TSIHQFLKNYEDLNVFLLAGEAFCGVEAVEFRQKLKVVCENYYVAFHKQSMH
        TSIHQFLKNYEDLNVF+LAGEAFCGVEAVEFRQKLK+VCENYYVAFHKQSMH
Subjt:  TSIHQFLKNYEDLNVFLLAGEAFCGVEAVEFRQKLKVVCENYYVAFHKQSMH

A0A6J1DF95 syndetin isoform X17.1e-7089.47Show/hide
Query:  MKQREDNYNLNLGETEESMTNVSSIGTTGIMNSVYMDGGDPNRESRADSSTASTSGSPWYHLKKDAISFISQTLQRGRKNLWQLTTSRVSVLLSSAAVCS
        MKQ++D+Y LNLG+TEE  TNVSS+GTTGIMNSVYMD  DP+RESR DSSTASTSGSPWYHL+KDAISF+SQTLQRGRKNLWQLTTSRVSVLLSSAAVCS
Subjt:  MKQREDNYNLNLGETEESMTNVSSIGTTGIMNSVYMDGGDPNRESRADSSTASTSGSPWYHLKKDAISFISQTLQRGRKNLWQLTTSRVSVLLSSAAVCS

Query:  TSIHQFLKNYEDLNVFLLAGEAFCGVEAVEFRQKLKVVCENYYVAFHKQSMH
        TSIHQFLKNYEDLNVF+LAGEAFCGVEAVEFRQKLK VCENYYVAFHKQSMH
Subjt:  TSIHQFLKNYEDLNVFLLAGEAFCGVEAVEFRQKLKVVCENYYVAFHKQSMH

A0A6J1DJ46 syndetin isoform X27.1e-7089.47Show/hide
Query:  MKQREDNYNLNLGETEESMTNVSSIGTTGIMNSVYMDGGDPNRESRADSSTASTSGSPWYHLKKDAISFISQTLQRGRKNLWQLTTSRVSVLLSSAAVCS
        MKQ++D+Y LNLG+TEE  TNVSS+GTTGIMNSVYMD  DP+RESR DSSTASTSGSPWYHL+KDAISF+SQTLQRGRKNLWQLTTSRVSVLLSSAAVCS
Subjt:  MKQREDNYNLNLGETEESMTNVSSIGTTGIMNSVYMDGGDPNRESRADSSTASTSGSPWYHLKKDAISFISQTLQRGRKNLWQLTTSRVSVLLSSAAVCS

Query:  TSIHQFLKNYEDLNVFLLAGEAFCGVEAVEFRQKLKVVCENYYVAFHKQSMH
        TSIHQFLKNYEDLNVF+LAGEAFCGVEAVEFRQKLK VCENYYVAFHKQSMH
Subjt:  TSIHQFLKNYEDLNVFLLAGEAFCGVEAVEFRQKLKVVCENYYVAFHKQSMH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G27900.1 CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2451, C-terminal (InterPro:IPR019514), Vacuolar protein sorting-associated protein 54 (InterPro:IPR019515); Has 316 Blast hits to 252 proteins in 92 species: Archae - 0; Bacteria - 2; Metazoa - 200; Fungi - 2; Plants - 68; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).1.8e-4164Show/hide
Query:  TGIMNSVYMDGGDPNRESRADSSTASTSGSPWYHLKKDAISFISQTLQRGRKNLWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDLNVFLLAGEAFCGVE
        +G  +SV +       ESR      S+S SPWY+L+K++ +F+S+TLQRGR+NLWQLTTSRVSVLLSS    STSIHQFLKNYEDL++F+LAGEAFCG E
Subjt:  TGIMNSVYMDGGDPNRESRADSSTASTSGSPWYHLKKDAISFISQTLQRGRKNLWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDLNVFLLAGEAFCGVE

Query:  AVEFRQKLKVVCENYYVAFHKQSMH
         V+FR+KLK VCENY+ AFH+QSMH
Subjt:  AVEFRQKLKVVCENYYVAFHKQSMH

AT2G27900.2 CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2451, C-terminal (InterPro:IPR019514), Vacuolar protein sorting-associated protein 54 (InterPro:IPR019515); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).1.8e-4164Show/hide
Query:  TGIMNSVYMDGGDPNRESRADSSTASTSGSPWYHLKKDAISFISQTLQRGRKNLWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDLNVFLLAGEAFCGVE
        +G  +SV +       ESR      S+S SPWY+L+K++ +F+S+TLQRGR+NLWQLTTSRVSVLLSS    STSIHQFLKNYEDL++F+LAGEAFCG E
Subjt:  TGIMNSVYMDGGDPNRESRADSSTASTSGSPWYHLKKDAISFISQTLQRGRKNLWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDLNVFLLAGEAFCGVE

Query:  AVEFRQKLKVVCENYYVAFHKQSMH
         V+FR+KLK VCENY+ AFH+QSMH
Subjt:  AVEFRQKLKVVCENYYVAFHKQSMH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGCAACGAGAAGATAATTATAATCTTAATTTAGGAGAGACAGAGGAGTCAATGACCAATGTCTCTTCTATCGGGACTACAGGAATTATGAATTCTGTTTACATGGA
TGGAGGTGATCCCAATAGGGAGTCCCGGGCAGATAGCAGTACAGCATCAACCAGTGGCTCTCCCTGGTATCATCTGAAAAAAGATGCTATAAGTTTTATTTCCCAAACCC
TACAAAGAGGCCGTAAGAACCTTTGGCAACTAACTACAAGTCGTGTGTCAGTACTGCTTTCTTCTGCTGCTGTTTGTTCAACGAGCATTCATCAATTTTTGAAAAACTAT
GAAGATCTCAATGTCTTCTTATTGGCTGGAGAAGCCTTCTGTGGAGTTGAAGCAGTTGAGTTTAGGCAAAAGTTGAAGGTTGTTTGTGAAAACTATTATGTGGCTTTCCA
TAAGCAGAGTATGCACGAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGCAACGAGAAGATAATTATAATCTTAATTTAGGAGAGACAGAGGAGTCAATGACCAATGTCTCTTCTATCGGGACTACAGGAATTATGAATTCTGTTTACATGGA
TGGAGGTGATCCCAATAGGGAGTCCCGGGCAGATAGCAGTACAGCATCAACCAGTGGCTCTCCCTGGTATCATCTGAAAAAAGATGCTATAAGTTTTATTTCCCAAACCC
TACAAAGAGGCCGTAAGAACCTTTGGCAACTAACTACAAGTCGTGTGTCAGTACTGCTTTCTTCTGCTGCTGTTTGTTCAACGAGCATTCATCAATTTTTGAAAAACTAT
GAAGATCTCAATGTCTTCTTATTGGCTGGAGAAGCCTTCTGTGGAGTTGAAGCAGTTGAGTTTAGGCAAAAGTTGAAGGTTGTTTGTGAAAACTATTATGTGGCTTTCCA
TAAGCAGAGTATGCACGAGTAG
Protein sequenceShow/hide protein sequence
MKQREDNYNLNLGETEESMTNVSSIGTTGIMNSVYMDGGDPNRESRADSSTASTSGSPWYHLKKDAISFISQTLQRGRKNLWQLTTSRVSVLLSSAAVCSTSIHQFLKNY
EDLNVFLLAGEAFCGVEAVEFRQKLKVVCENYYVAFHKQSMHE