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Spg020847 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg020847
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein
Genome locationscaffold10:28670752..28673699
RNA-Seq ExpressionSpg020847
SyntenySpg020847
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040540.1 retrotransposon protein [Cucumis melo var. makuwa]1.9e-1840.85Show/hide
Query:  KEKPSSSSITDGSHQKGK-EVEDTIEVTEKSGWNGCDDAPIRIGGDRSKFKRLEMLVFTGTNPDSWLFRAEKYFEIHQLMEWEKIIVVIIIFDEYVVDWY
        K+K  S + +DGS  K K ++++T  +TE +G             DRSK+K+LEM +F G NP+SW++RAE +FEI+ L E EK+ V ++ F +  VDWY
Subjt:  KEKPSSSSITDGSHQKGK-EVEDTIEVTEKSGWNGCDDAPIRIGGDRSKFKRLEMLVFTGTNPDSWLFRAEKYFEIHQLMEWEKIIVVIIIFDEYVVDWY

Query:  HWSHNYKKITSWEDLRT-IDDFSLLKRESGTGEHILERLEAD
         WSHN KK+ SWEDL++ + +F    R+   G  ++ R++ D
Subjt:  HWSHNYKKITSWEDLRT-IDDFSLLKRESGTGEHILERLEAD

KAA0061073.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]4.2e-1845.3Show/hide
Query:  KEKPSSSSITDGSHQKGK-EVEDTIEVTEKSGWNGCDDAPIRIGGDRSKFKRLEMLVFTGTNPDSWLFRAEKYFEIHQLMEWEKIIVVIIIFDEYVVDWY
        K+K  S + +DGS  K K ++++T  +TE +G             DRSK+K+LEM +F G NP+SW++RAE +FEI+ L E EK+ V ++ F +  VDWY
Subjt:  KEKPSSSSITDGSHQKGK-EVEDTIEVTEKSGWNGCDDAPIRIGGDRSKFKRLEMLVFTGTNPDSWLFRAEKYFEIHQLMEWEKIIVVIIIFDEYVVDWY

Query:  HWSHNYKKITSWEDLRT
         WSHN KK+ SWEDL++
Subjt:  HWSHNYKKITSWEDLRT

TYK04121.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]5.5e-1845.3Show/hide
Query:  KEKPSSSSITDGSHQKGK-EVEDTIEVTEKSGWNGCDDAPIRIGGDRSKFKRLEMLVFTGTNPDSWLFRAEKYFEIHQLMEWEKIIVVIIIFDEYVVDWY
        K+K  S + +DGS  K K ++++T  +TE +G             DRSK+K+LEM +F G NP+SW++RAE +FEI+ L E EK+ V ++ F +  VDWY
Subjt:  KEKPSSSSITDGSHQKGK-EVEDTIEVTEKSGWNGCDDAPIRIGGDRSKFKRLEMLVFTGTNPDSWLFRAEKYFEIHQLMEWEKIIVVIIIFDEYVVDWY

Query:  HWSHNYKKITSWEDLRT
         WSHN KK+ SWEDL++
Subjt:  HWSHNYKKITSWEDLRT

TYK05582.1 retrotransposon protein [Cucumis melo var. makuwa]1.1e-1840.85Show/hide
Query:  KEKPSSSSITDGSHQKGK-EVEDTIEVTEKSGWNGCDDAPIRIGGDRSKFKRLEMLVFTGTNPDSWLFRAEKYFEIHQLMEWEKIIVVIIIFDEYVVDWY
        K+K  S + +DGS  K K ++++T  +TE +G             DRSK+K+LEM +F G NP+SW++RAE +FEI+ L E EK+ V ++ F +  VDWY
Subjt:  KEKPSSSSITDGSHQKGK-EVEDTIEVTEKSGWNGCDDAPIRIGGDRSKFKRLEMLVFTGTNPDSWLFRAEKYFEIHQLMEWEKIIVVIIIFDEYVVDWY

Query:  HWSHNYKKITSWEDLRT-IDDFSLLKRESGTGEHILERLEAD
         WSHN KK+ SWEDL++ + +F    R+   G  ++ R++ D
Subjt:  HWSHNYKKITSWEDLRT-IDDFSLLKRESGTGEHILERLEAD

XP_038893564.1 uncharacterized protein LOC120082453 [Benincasa hispida]1.4e-1838.82Show/hide
Query:  EKPSSSSITDGSHQKGKEVEDTIEVTEKSGWNGCDDAPIRIGGDRSKFKRLEMLVFTGTNPDSWLFRAEKYFEIHQLMEWEKIIVVIIIFDEYVVDWYHW
        +K   S  +DG   K K   D  E T  +G           G D+SK+KRLE+ +F G NP+SW++RAE YFEI++L + EK+ VV+I F    VDW+ W
Subjt:  EKPSSSSITDGSHQKGKEVEDTIEVTEKSGWNGCDDAPIRIGGDRSKFKRLEMLVFTGTNPDSWLFRAEKYFEIHQLMEWEKIIVVIIIFDEYVVDWYHW

Query:  SHNYKKITSWEDLRTIDDFSLLKRESGTGEHILERLEADDQGHCRGIVLRFV
        SHN + I  WE+L+ I  F    R +G G      L    +G     V +FV
Subjt:  SHNYKKITSWEDLRTIDDFSLLKRESGTGEHILERLEADDQGHCRGIVLRFV

TrEMBL top hitse value%identityAlignment
A0A5A7TB62 Retrotransposon protein9.1e-1940.85Show/hide
Query:  KEKPSSSSITDGSHQKGK-EVEDTIEVTEKSGWNGCDDAPIRIGGDRSKFKRLEMLVFTGTNPDSWLFRAEKYFEIHQLMEWEKIIVVIIIFDEYVVDWY
        K+K  S + +DGS  K K ++++T  +TE +G             DRSK+K+LEM +F G NP+SW++RAE +FEI+ L E EK+ V ++ F +  VDWY
Subjt:  KEKPSSSSITDGSHQKGK-EVEDTIEVTEKSGWNGCDDAPIRIGGDRSKFKRLEMLVFTGTNPDSWLFRAEKYFEIHQLMEWEKIIVVIIIFDEYVVDWY

Query:  HWSHNYKKITSWEDLRT-IDDFSLLKRESGTGEHILERLEAD
         WSHN KK+ SWEDL++ + +F    R+   G  ++ R++ D
Subjt:  HWSHNYKKITSWEDLRT-IDDFSLLKRESGTGEHILERLEAD

A0A5A7UYM1 Ty3/gypsy retrotransposon protein2.0e-1845.3Show/hide
Query:  KEKPSSSSITDGSHQKGK-EVEDTIEVTEKSGWNGCDDAPIRIGGDRSKFKRLEMLVFTGTNPDSWLFRAEKYFEIHQLMEWEKIIVVIIIFDEYVVDWY
        K+K  S + +DGS  K K ++++T  +TE +G             DRSK+K+LEM +F G NP+SW++RAE +FEI+ L E EK+ V ++ F +  VDWY
Subjt:  KEKPSSSSITDGSHQKGK-EVEDTIEVTEKSGWNGCDDAPIRIGGDRSKFKRLEMLVFTGTNPDSWLFRAEKYFEIHQLMEWEKIIVVIIIFDEYVVDWY

Query:  HWSHNYKKITSWEDLRT
         WSHN KK+ SWEDL++
Subjt:  HWSHNYKKITSWEDLRT

A0A5A7V4F5 Retrotransposon protein2.7e-1845.3Show/hide
Query:  KEKPSSSSITDGSHQKGK-EVEDTIEVTEKSGWNGCDDAPIRIGGDRSKFKRLEMLVFTGTNPDSWLFRAEKYFEIHQLMEWEKIIVVIIIFDEYVVDWY
        K+K  S + +DGS  K K ++++T  +TE +G             DRSK+K+LEM +F G NP+SW++RAE +FEI+ L E EK+ V ++ F +  VDWY
Subjt:  KEKPSSSSITDGSHQKGK-EVEDTIEVTEKSGWNGCDDAPIRIGGDRSKFKRLEMLVFTGTNPDSWLFRAEKYFEIHQLMEWEKIIVVIIIFDEYVVDWY

Query:  HWSHNYKKITSWEDLRT
         WSHN KK+ SWEDL++
Subjt:  HWSHNYKKITSWEDLRT

A0A5D3C2Z9 Retrotransposon protein5.3e-1940.85Show/hide
Query:  KEKPSSSSITDGSHQKGK-EVEDTIEVTEKSGWNGCDDAPIRIGGDRSKFKRLEMLVFTGTNPDSWLFRAEKYFEIHQLMEWEKIIVVIIIFDEYVVDWY
        K+K  S + +DGS  K K ++++T  +TE +G             DRSK+K+LEM +F G NP+SW++RAE +FEI+ L E EK+ V ++ F +  VDWY
Subjt:  KEKPSSSSITDGSHQKGK-EVEDTIEVTEKSGWNGCDDAPIRIGGDRSKFKRLEMLVFTGTNPDSWLFRAEKYFEIHQLMEWEKIIVVIIIFDEYVVDWY

Query:  HWSHNYKKITSWEDLRT-IDDFSLLKRESGTGEHILERLEAD
         WSHN KK+ SWEDL++ + +F    R+   G  ++ R++ D
Subjt:  HWSHNYKKITSWEDLRT-IDDFSLLKRESGTGEHILERLEAD

A0A5D3CRW1 Retrotransposon protein2.7e-1845.3Show/hide
Query:  KEKPSSSSITDGSHQKGK-EVEDTIEVTEKSGWNGCDDAPIRIGGDRSKFKRLEMLVFTGTNPDSWLFRAEKYFEIHQLMEWEKIIVVIIIFDEYVVDWY
        K+K  S + +DGS  K K ++++T  +TE +G             DRSK+K+LEM +F G NP+SW++RAE +FEI+ L E EK+ V ++ F +  VDWY
Subjt:  KEKPSSSSITDGSHQKGK-EVEDTIEVTEKSGWNGCDDAPIRIGGDRSKFKRLEMLVFTGTNPDSWLFRAEKYFEIHQLMEWEKIIVVIIIFDEYVVDWY

Query:  HWSHNYKKITSWEDLRT
         WSHN KK+ SWEDL++
Subjt:  HWSHNYKKITSWEDLRT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTACAGAAGTTATGGTATTGAAAGAAAAACCCTCATCATCATCTATTACAGACGGATCACACCAAAAAGGGAAGGAAGTAGAAGACACCATAGAGGTGACAGAGAA
GTCAGGATGGAATGGTTGCGATGATGCGCCCATTCGAATTGGGGGAGATAGGAGCAAGTTCAAAAGGCTAGAGATGCTAGTGTTCACAGGTACAAATCCCGATTCTTGGC
TATTTAGGGCAGAGAAATATTTTGAAATCCACCAACTGATGGAATGGGAGAAAATAATCGTTGTGATTATAATTTTCGATGAGTATGTTGTGGATTGGTACCATTGGTCT
CATAACTACAAGAAAATCACTTCATGGGAGGACCTTCGAACTATCGACGATTTCAGCCTTCTCAAGAGGGAAAGTGGTACTGGAGAACACATTCTTGAACGGCTTGAAGC
TGACGATCAAGGCCACTGTCGAGGGATTGTCCTTAGATTTGTATGGGACCCCTGGGGTGGGGTGAAAGGGATCCCATTCATTCTCCTACTCTCAGAGAATTCTCCCAAAG
GCTCCCACAAGTCTCCTGCCTCTAGAAGTCTCAGAGTCATACCGGTGACAGTTCAAGGCGGTGGGGCGGTCCGGTTCACTCGGATTGCGGCTAGGACCGATTTTGTCCGG
TTCAGCTGGAATTTGGCTCGGTTCGTGGTTTTCGGAGCTAGTTCGAAGTGGTTCGAGTCAGTTCGGACGGTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTTACAGAAGTTATGGTATTGAAAGAAAAACCCTCATCATCATCTATTACAGACGGATCACACCAAAAAGGGAAGGAAGTAGAAGACACCATAGAGGTGACAGAGAA
GTCAGGATGGAATGGTTGCGATGATGCGCCCATTCGAATTGGGGGAGATAGGAGCAAGTTCAAAAGGCTAGAGATGCTAGTGTTCACAGGTACAAATCCCGATTCTTGGC
TATTTAGGGCAGAGAAATATTTTGAAATCCACCAACTGATGGAATGGGAGAAAATAATCGTTGTGATTATAATTTTCGATGAGTATGTTGTGGATTGGTACCATTGGTCT
CATAACTACAAGAAAATCACTTCATGGGAGGACCTTCGAACTATCGACGATTTCAGCCTTCTCAAGAGGGAAAGTGGTACTGGAGAACACATTCTTGAACGGCTTGAAGC
TGACGATCAAGGCCACTGTCGAGGGATTGTCCTTAGATTTGTATGGGACCCCTGGGGTGGGGTGAAAGGGATCCCATTCATTCTCCTACTCTCAGAGAATTCTCCCAAAG
GCTCCCACAAGTCTCCTGCCTCTAGAAGTCTCAGAGTCATACCGGTGACAGTTCAAGGCGGTGGGGCGGTCCGGTTCACTCGGATTGCGGCTAGGACCGATTTTGTCCGG
TTCAGCTGGAATTTGGCTCGGTTCGTGGTTTTCGGAGCTAGTTCGAAGTGGTTCGAGTCAGTTCGGACGGTCTAG
Protein sequenceShow/hide protein sequence
MLTEVMVLKEKPSSSSITDGSHQKGKEVEDTIEVTEKSGWNGCDDAPIRIGGDRSKFKRLEMLVFTGTNPDSWLFRAEKYFEIHQLMEWEKIIVVIIIFDEYVVDWYHWS
HNYKKITSWEDLRTIDDFSLLKRESGTGEHILERLEADDQGHCRGIVLRFVWDPWGGVKGIPFILLLSENSPKGSHKSPASRSLRVIPVTVQGGGAVRFTRIAARTDFVR
FSWNLARFVVFGASSKWFESVRTV