; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg020870 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg020870
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Genome locationscaffold10:26880069..26883649
RNA-Seq ExpressionSpg020870
SyntenySpg020870
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025725.1 retrotransposon gag protein [Cucumis melo var. makuwa]9.3e-1860.2Show/hide
Query:  MSMAATEEENQCSMSTSTRPLAFQRLSVSTSKKSRSSIFVFDHLKVTDDQPQRKIDNLKVKLFDEVSSDKKLQSIVLSRMKRKFSVLINTEGSLKVWP
        +SMA  EEENQC  ST  R  AF+RLS+STSKK R S   FD LK+T+DQ QR++ +LK K F E + D K++S V SRMKRK SV INTEGSL V P
Subjt:  MSMAATEEENQCSMSTSTRPLAFQRLSVSTSKKSRSSIFVFDHLKVTDDQPQRKIDNLKVKLFDEVSSDKKLQSIVLSRMKRKFSVLINTEGSLKVWP

KAA0036008.1 Retrotransposon gag protein [Cucumis melo var. makuwa]9.3e-1860.2Show/hide
Query:  MSMAATEEENQCSMSTSTRPLAFQRLSVSTSKKSRSSIFVFDHLKVTDDQPQRKIDNLKVKLFDEVSSDKKLQSIVLSRMKRKFSVLINTEGSLKVWP
        +SMA  EEENQC MST  R  AF+RLS+STSKK R S   FD LK+T+DQ QR++ + K K F E + D K+ S V SRMKRK SV INTEGSL V P
Subjt:  MSMAATEEENQCSMSTSTRPLAFQRLSVSTSKKSRSSIFVFDHLKVTDDQPQRKIDNLKVKLFDEVSSDKKLQSIVLSRMKRKFSVLINTEGSLKVWP

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.6e-1760.2Show/hide
Query:  MSMAATEEENQCSMSTSTRPLAFQRLSVSTSKKSRSSIFVFDHLKVTDDQPQRKIDNLKVKLFDEVSSDKKLQSIVLSRMKRKFSVLINTEGSLKVWP
        +SMA  EEENQC  ST  R  AF+RLS+STSKK R S   FD LK+T+DQ QR++ +LK K F E + D K+ S V SRMKRK SV INTEGSL V P
Subjt:  MSMAATEEENQCSMSTSTRPLAFQRLSVSTSKKSRSSIFVFDHLKVTDDQPQRKIDNLKVKLFDEVSSDKKLQSIVLSRMKRKFSVLINTEGSLKVWP

KAA0050734.1 gag protease polyprotein [Cucumis melo var. makuwa]1.6e-1760.2Show/hide
Query:  MSMAATEEENQCSMSTSTRPLAFQRLSVSTSKKSRSSIFVFDHLKVTDDQPQRKIDNLKVKLFDEVSSDKKLQSIVLSRMKRKFSVLINTEGSLKVWP
        +SMA  EEENQC  ST  R  AF+RLS+STSKK R S   FD LK+T+DQ QR++ +LK K F E + D K+ S V SRMKRK SV INTEGSL V P
Subjt:  MSMAATEEENQCSMSTSTRPLAFQRLSVSTSKKSRSSIFVFDHLKVTDDQPQRKIDNLKVKLFDEVSSDKKLQSIVLSRMKRKFSVLINTEGSLKVWP

KAA0063700.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.6e-1758.16Show/hide
Query:  MSMAATEEENQCSMSTSTRPLAFQRLSVSTSKKSRSSIFVFDHLKVTDDQPQRKIDNLKVKLFDEVSSDKKLQSIVLSRMKRKFSVLINTEGSLKVWP
        +S A  EEENQC  ST TR  AF+RLS+STSKK+R S F FD +K+T+ Q QR++ +LK KLF E + D  + S V SRMKRK S+ INTEGSL V P
Subjt:  MSMAATEEENQCSMSTSTRPLAFQRLSVSTSKKSRSSIFVFDHLKVTDDQPQRKIDNLKVKLFDEVSSDKKLQSIVLSRMKRKFSVLINTEGSLKVWP

TrEMBL top hitse value%identityAlignment
A0A5A7SMQ5 Retrotransposon gag protein4.5e-1860.2Show/hide
Query:  MSMAATEEENQCSMSTSTRPLAFQRLSVSTSKKSRSSIFVFDHLKVTDDQPQRKIDNLKVKLFDEVSSDKKLQSIVLSRMKRKFSVLINTEGSLKVWP
        +SMA  EEENQC  ST  R  AF+RLS+STSKK R S   FD LK+T+DQ QR++ +LK K F E + D K++S V SRMKRK SV INTEGSL V P
Subjt:  MSMAATEEENQCSMSTSTRPLAFQRLSVSTSKKSRSSIFVFDHLKVTDDQPQRKIDNLKVKLFDEVSSDKKLQSIVLSRMKRKFSVLINTEGSLKVWP

A0A5A7SZJ7 Retrotransposon gag protein4.5e-1860.2Show/hide
Query:  MSMAATEEENQCSMSTSTRPLAFQRLSVSTSKKSRSSIFVFDHLKVTDDQPQRKIDNLKVKLFDEVSSDKKLQSIVLSRMKRKFSVLINTEGSLKVWP
        +SMA  EEENQC MST  R  AF+RLS+STSKK R S   FD LK+T+DQ QR++ + K K F E + D K+ S V SRMKRK SV INTEGSL V P
Subjt:  MSMAATEEENQCSMSTSTRPLAFQRLSVSTSKKSRSSIFVFDHLKVTDDQPQRKIDNLKVKLFDEVSSDKKLQSIVLSRMKRKFSVLINTEGSLKVWP

A0A5A7TQ06 Retrotransposon gag protein7.7e-1860.2Show/hide
Query:  MSMAATEEENQCSMSTSTRPLAFQRLSVSTSKKSRSSIFVFDHLKVTDDQPQRKIDNLKVKLFDEVSSDKKLQSIVLSRMKRKFSVLINTEGSLKVWP
        +SMA  EEENQC  ST  R  AF+RLS+STSKK R S   FD LK+T+DQ QR++ +LK K F E + D K+ S V SRMKRK SV INTEGSL V P
Subjt:  MSMAATEEENQCSMSTSTRPLAFQRLSVSTSKKSRSSIFVFDHLKVTDDQPQRKIDNLKVKLFDEVSSDKKLQSIVLSRMKRKFSVLINTEGSLKVWP

A0A5A7V935 Ty3-gypsy retrotransposon protein7.7e-1858.16Show/hide
Query:  MSMAATEEENQCSMSTSTRPLAFQRLSVSTSKKSRSSIFVFDHLKVTDDQPQRKIDNLKVKLFDEVSSDKKLQSIVLSRMKRKFSVLINTEGSLKVWP
        +S A  EEENQC  ST TR  AF+RLS+STSKK+R S F FD +K+T+ Q QR++ +LK KLF E + D  + S V SRMKRK S+ INTEGSL V P
Subjt:  MSMAATEEENQCSMSTSTRPLAFQRLSVSTSKKSRSSIFVFDHLKVTDDQPQRKIDNLKVKLFDEVSSDKKLQSIVLSRMKRKFSVLINTEGSLKVWP

A0A5D3BBF9 Gag protease polyprotein7.7e-1860.2Show/hide
Query:  MSMAATEEENQCSMSTSTRPLAFQRLSVSTSKKSRSSIFVFDHLKVTDDQPQRKIDNLKVKLFDEVSSDKKLQSIVLSRMKRKFSVLINTEGSLKVWP
        +SMA  EEENQC  ST  R  AF+RLS+STSKK R S   FD LK+T+DQ QR++ +LK K F E + D K+ S V SRMKRK SV INTEGSL V P
Subjt:  MSMAATEEENQCSMSTSTRPLAFQRLSVSTSKKSRSSIFVFDHLKVTDDQPQRKIDNLKVKLFDEVSSDKKLQSIVLSRMKRKFSVLINTEGSLKVWP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTATGGCCGCGACAGAAGAAGAAAATCAATGTTCGATGTCCACCTCCACTCGACCTTTAGCTTTCCAAAGGCTAAGTGTCTCCACATCAAAGAAAAGTCGATCTTC
AATATTTGTCTTTGATCACCTCAAAGTAACAGACGATCAACCTCAAAGAAAGATAGATAACTTAAAGGTGAAATTGTTCGATGAAGTAAGCAGTGACAAGAAGCTTCAAA
GTATTGTCCTGTCACGTATGAAAAGGAAGTTCTCTGTTCTCATAAATACAGAAGGTTCCTTGAAGGTTTGGCCTCTAATTCCTTTATCTCCAAGGATGATCGTGCAAGCT
GTTGTACGAGGCTTCGCTCATTTCAAGTTCAAGTTCGAGCTTTCCTCACTTCAAGTACTTCAAGTTCAAGCTTTCATCGCTTCAAGTACTCTAAGTTCAAGTTCGAGCTT
TCCTCATTTCAAGGATAAGGCTGGGTACCTTATCCTGGTGACACTATGTGATACGACCCACCTTGTATTCGATACAGATGCAATGATCCAAAGCATCCATATTTGTATGG
GTGAGAGTGGCCAGTTCGCCGACTCAATAAGCCTACCATTTCAGGGGCAAGATCGAATGGGGGCTGGGAACATAACAGTACAAGATGGAATTCACTCCTTCCCCTATTGG
GAAATATTCTATAGTGAGAAGAGTGCAGCTGACCCCTGGGGTGGGGTGAAAGGTATCCCATTCATTCTCCTACTCTCAGAGAATTCTCCTAAAGGCTCCCACAAGTCTCC
TGCCTATAGAAGTCTCAGAGTCATACCGGTAGTACTTCAAGTTCAAGCTTTCATCGCTTCAAGTGCTTTGAGTTCAAGTTCGGGGCTTCGCTTGTTTCAAGTTCAAGTTC
GAGCATTCCCTACTGCAAGTACTGCAAGTTCCAGTTCAATCTTTGTTCATTTCAAGTTCAAGTTCAAGCTTTCATAA
mRNA sequenceShow/hide mRNA sequence
ATGAGTATGGCCGCGACAGAAGAAGAAAATCAATGTTCGATGTCCACCTCCACTCGACCTTTAGCTTTCCAAAGGCTAAGTGTCTCCACATCAAAGAAAAGTCGATCTTC
AATATTTGTCTTTGATCACCTCAAAGTAACAGACGATCAACCTCAAAGAAAGATAGATAACTTAAAGGTGAAATTGTTCGATGAAGTAAGCAGTGACAAGAAGCTTCAAA
GTATTGTCCTGTCACGTATGAAAAGGAAGTTCTCTGTTCTCATAAATACAGAAGGTTCCTTGAAGGTTTGGCCTCTAATTCCTTTATCTCCAAGGATGATCGTGCAAGCT
GTTGTACGAGGCTTCGCTCATTTCAAGTTCAAGTTCGAGCTTTCCTCACTTCAAGTACTTCAAGTTCAAGCTTTCATCGCTTCAAGTACTCTAAGTTCAAGTTCGAGCTT
TCCTCATTTCAAGGATAAGGCTGGGTACCTTATCCTGGTGACACTATGTGATACGACCCACCTTGTATTCGATACAGATGCAATGATCCAAAGCATCCATATTTGTATGG
GTGAGAGTGGCCAGTTCGCCGACTCAATAAGCCTACCATTTCAGGGGCAAGATCGAATGGGGGCTGGGAACATAACAGTACAAGATGGAATTCACTCCTTCCCCTATTGG
GAAATATTCTATAGTGAGAAGAGTGCAGCTGACCCCTGGGGTGGGGTGAAAGGTATCCCATTCATTCTCCTACTCTCAGAGAATTCTCCTAAAGGCTCCCACAAGTCTCC
TGCCTATAGAAGTCTCAGAGTCATACCGGTAGTACTTCAAGTTCAAGCTTTCATCGCTTCAAGTGCTTTGAGTTCAAGTTCGGGGCTTCGCTTGTTTCAAGTTCAAGTTC
GAGCATTCCCTACTGCAAGTACTGCAAGTTCCAGTTCAATCTTTGTTCATTTCAAGTTCAAGTTCAAGCTTTCATAA
Protein sequenceShow/hide protein sequence
MSMAATEEENQCSMSTSTRPLAFQRLSVSTSKKSRSSIFVFDHLKVTDDQPQRKIDNLKVKLFDEVSSDKKLQSIVLSRMKRKFSVLINTEGSLKVWPLIPLSPRMIVQA
VVRGFAHFKFKFELSSLQVLQVQAFIASSTLSSSSSFPHFKDKAGYLILVTLCDTTHLVFDTDAMIQSIHICMGESGQFADSISLPFQGQDRMGAGNITVQDGIHSFPYW
EIFYSEKSAADPWGGVKGIPFILLLSENSPKGSHKSPAYRSLRVIPVVLQVQAFIASSALSSSSGLRLFQVQVRAFPTASTASSSSIFVHFKFKFKLS