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Spg020916 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg020916
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionmediator of RNA polymerase II transcription subunit 22b-like
Genome locationscaffold9:1810260..1811374
RNA-Seq ExpressionSpg020916
SyntenySpg020916
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0048193 - Golgi vesicle transport (biological process)
GO:0005783 - endoplasmic reticulum (cellular component)
GO:0005794 - Golgi apparatus (cellular component)
GO:0016592 - mediator complex (cellular component)
GO:0030008 - TRAPP complex (cellular component)
GO:0003712 - transcription coregulator activity (molecular function)
InterPro domainsIPR009332 - Mediator of RNA polymerase II transcription subunit 22


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7029838.1 Mediator of RNA polymerase II transcription subunit 22b [Cucurbita argyrosperma subsp. argyrosperma]6.3e-3092.5Show/hide
Query:  LVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAEQTDRILSRIGEEAAASLKDLESHYYSSTQRTSQNMLT
        +VQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAEQTDRILS+IGEEAA  LK+LESHYYSSTQRTSQN LT
Subjt:  LVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAEQTDRILSRIGEEAAASLKDLESHYYSSTQRTSQNMLT

XP_004145443.1 mediator of RNA polymerase II transcription subunit 22b [Cucumis sativus]8.3e-3091.25Show/hide
Query:  LVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAEQTDRILSRIGEEAAASLKDLESHYYSSTQRTSQNMLT
        +VQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQA+QTDR+LSRIGEEAAA+LK+LESHYYSSTQRT QN LT
Subjt:  LVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAEQTDRILSRIGEEAAASLKDLESHYYSSTQRTSQNMLT

XP_022155216.1 mediator of RNA polymerase II transcription subunit 22b-like [Momordica charantia]9.8e-3193.75Show/hide
Query:  LVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAEQTDRILSRIGEEAAASLKDLESHYYSSTQRTSQNMLT
        +VQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAEQTDR+LSRIGEEAA SLK+LESHYYSSTQRTSQN+LT
Subjt:  LVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAEQTDRILSRIGEEAAASLKDLESHYYSSTQRTSQNMLT

XP_023545554.1 mediator of RNA polymerase II transcription subunit 22b-like [Cucurbita pepo subsp. pepo]8.3e-3091.25Show/hide
Query:  LVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAEQTDRILSRIGEEAAASLKDLESHYYSSTQRTSQNMLT
        +VQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAEQTDR+LS+IGEEAA  LK+LESHYYSSTQRTSQN LT
Subjt:  LVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAEQTDRILSRIGEEAAASLKDLESHYYSSTQRTSQNMLT

XP_038891249.1 mediator of RNA polymerase II transcription subunit 22b-like [Benincasa hispida]8.3e-3092.5Show/hide
Query:  LVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAEQTDRILSRIGEEAAASLKDLESHYYSSTQRTSQNMLT
        +VQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQA+QTDR+LS IGEEAAASLK+LESHYYSSTQRTSQN LT
Subjt:  LVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAEQTDRILSRIGEEAAASLKDLESHYYSSTQRTSQNMLT

TrEMBL top hitse value%identityAlignment
A0A0A0M174 Uncharacterized protein4.0e-3091.25Show/hide
Query:  LVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAEQTDRILSRIGEEAAASLKDLESHYYSSTQRTSQNMLT
        +VQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQA+QTDR+LSRIGEEAAA+LK+LESHYYSSTQRT QN LT
Subjt:  LVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAEQTDRILSRIGEEAAASLKDLESHYYSSTQRTSQNMLT

A0A1S3C993 mediator of RNA polymerase II transcription subunit 22b-like isoform X21.5e-2990Show/hide
Query:  LVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAEQTDRILSRIGEEAAASLKDLESHYYSSTQRTSQNMLT
        +VQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQA+QT+R+LSRIGEEAAA+LK+LESHYYSSTQRT QN LT
Subjt:  LVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAEQTDRILSRIGEEAAASLKDLESHYYSSTQRTSQNMLT

A0A5A7TMC4 Mediator of RNA polymerase II transcription subunit 22a-like isoform X11.5e-2990Show/hide
Query:  LVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAEQTDRILSRIGEEAAASLKDLESHYYSSTQRTSQNMLT
        +VQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQA+QT+R+LSRIGEEAAA+LK+LESHYYSSTQRT QN LT
Subjt:  LVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAEQTDRILSRIGEEAAASLKDLESHYYSSTQRTSQNMLT

A0A6J1DR20 mediator of RNA polymerase II transcription subunit 22b-like4.7e-3193.75Show/hide
Query:  LVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAEQTDRILSRIGEEAAASLKDLESHYYSSTQRTSQNMLT
        +VQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAEQTDR+LSRIGEEAA SLK+LESHYYSSTQRTSQN+LT
Subjt:  LVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAEQTDRILSRIGEEAAASLKDLESHYYSSTQRTSQNMLT

A0A6J1EN95 mediator of RNA polymerase II transcription subunit 22b-like5.2e-3091.25Show/hide
Query:  LVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAEQTDRILSRIGEEAAASLKDLESHYYSSTQRTSQNMLT
        +VQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAEQTDRI+S+IGEEAA  LK+LESHYYSSTQRTSQN LT
Subjt:  LVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAEQTDRILSRIGEEAAASLKDLESHYYSSTQRTSQNMLT

SwissProt top hitse value%identityAlignment
A0JPN6 Mediator of RNA polymerase II transcription subunit 224.6e-0740.85Show/hide
Query:  LVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAEQTDRILSRIGEEAAASLKDLESHYYSST
        +V+A +SL+KLVS+LKQ  I + F S+N+ ++QR  +     E+ DR L  + +E +  L +LE  YYSS+
Subjt:  LVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAEQTDRILSRIGEEAAASLKDLESHYYSST

Q5E9K2 Mediator of RNA polymerase II transcription subunit 224.6e-0740.85Show/hide
Query:  LVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAEQTDRILSRIGEEAAASLKDLESHYYSST
        +V+A +SL+KLVS+LKQ  I + F S+N+ ++QR  +     E+ DR L  + +E +  L +LE  YYSS+
Subjt:  LVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAEQTDRILSRIGEEAAASLKDLESHYYSST

Q62276 Mediator of RNA polymerase II transcription subunit 224.6e-0740.85Show/hide
Query:  LVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAEQTDRILSRIGEEAAASLKDLESHYYSST
        +V+A +SL+KLVS+LKQ  I + F S+N+ ++QR  +     E+ DR L  + +E +  L +LE  YYSS+
Subjt:  LVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAEQTDRILSRIGEEAAASLKDLESHYYSST

Q8LCH5 Mediator of RNA polymerase II transcription subunit 22b3.7e-2579.45Show/hide
Query:  LVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAEQTDRILSRIGEEAAASLKDLESHYYSSTQR
        +VQAADSLLKLVSELKQTAIFSGFASLNDHVEQRI EF+Q+AE+T+R+L+RI ++A+A+LK+LESHYYSS QR
Subjt:  LVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAEQTDRILSRIGEEAAASLKDLESHYYSSTQR

Q9SA42 Mediator of RNA polymerase II transcription subunit 22a4.4e-2680Show/hide
Query:  LVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAEQTDRILSRIGEEAAASLKDLESHYYSSTQRTS
        LVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRI EF+Q+AE+T+R+L+RI ++A+ASLK+LESHYYSS QR++
Subjt:  LVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAEQTDRILSRIGEEAAASLKDLESHYYSSTQRTS

Arabidopsis top hitse value%identityAlignment
AT1G07950.1 Surfeit locus protein 5 subunit 22 of Mediator complex2.7e-2679.45Show/hide
Query:  LVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAEQTDRILSRIGEEAAASLKDLESHYYSSTQR
        +VQAADSLLKLVSELKQTAIFSGFASLNDHVEQRI EF+Q+AE+T+R+L+RI ++A+A+LK+LESHYYSS QR
Subjt:  LVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAEQTDRILSRIGEEAAASLKDLESHYYSSTQR

AT1G16430.1 Surfeit locus protein 5 subunit 22 of Mediator complex3.1e-2780Show/hide
Query:  LVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAEQTDRILSRIGEEAAASLKDLESHYYSSTQRTS
        LVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRI EF+Q+AE+T+R+L+RI ++A+ASLK+LESHYYSS QR++
Subjt:  LVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAEQTDRILSRIGEEAAASLKDLESHYYSSTQRTS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGCGGGACGTGTTAGTTCAGGCAGCTGATTCTCTACTTAAGTTGGTGTCAGAACTTAAGCAGACAGCAATATTTTCGGGATTTGCTTCGCTTAACGACCACGTGGA
GCAAAGAATTGTAGAGTTTAATCAGCAAGCAGAGCAGACTGACCGTATCTTATCTAGAATTGGTGAAGAAGCTGCTGCTAGCCTGAAGGATCTTGAATCCCATTATTATT
CTTCAACACAGAGAACAAGTCAAAACATGTTGACTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGGCGGGACGTGTTAGTTCAGGCAGCTGATTCTCTACTTAAGTTGGTGTCAGAACTTAAGCAGACAGCAATATTTTCGGGATTTGCTTCGCTTAACGACCACGTGGA
GCAAAGAATTGTAGAGTTTAATCAGCAAGCAGAGCAGACTGACCGTATCTTATCTAGAATTGGTGAAGAAGCTGCTGCTAGCCTGAAGGATCTTGAATCCCATTATTATT
CTTCAACACAGAGAACAAGTCAAAACATGTTGACTTGA
Protein sequenceShow/hide protein sequence
MGRDVLVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAEQTDRILSRIGEEAAASLKDLESHYYSSTQRTSQNMLT