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Spg020923 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg020923
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold9:661941..668503
RNA-Seq ExpressionSpg020923
SyntenySpg020923
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008233 - peptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037518.1 uncharacterized protein E6C27_scaffold277G001300 [Cucumis melo var. makuwa]1.3e-1365.67Show/hide
Query:  MSSNKQLAKTHVERLVEIEEQLLYLREVPDAVRFVESRLEEISIKADKVDAVAGRVDGMPIQELMMR
        MSS+    K   +RLVEIEEQ+LYL EVPD++R++ESR+EEIS KAD +DAVAGRV+G+PIQEL+ R
Subjt:  MSSNKQLAKTHVERLVEIEEQLLYLREVPDAVRFVESRLEEISIKADKVDAVAGRVDGMPIQELMMR
KAA0037573.1 reverse transcriptase [Cucumis melo var. makuwa]1.3e-1365.67Show/hide
Query:  MSSNKQLAKTHVERLVEIEEQLLYLREVPDAVRFVESRLEEISIKADKVDAVAGRVDGMPIQELMMR
        MSS+  L K   +RLVE+EEQ+LYL EVPD++R++ESRLEEIS K + +DAVAGRV+G PIQELM R
Subjt:  MSSNKQLAKTHVERLVEIEEQLLYLREVPDAVRFVESRLEEISIKADKVDAVAGRVDGMPIQELMMR
XP_022150099.1 uncharacterized protein LOC111018360 [Momordica charantia]5.9e-1462.32Show/hide
Query:  MSSNKQLAKTHVERLVEIEEQLLYLREVPDAVRFVESRLEEISIKADKVDAVAGRVDGMPIQELMMRNE
        MS+ KQL+K+HV+RLVEIEEQLLYLREVPD +R +E+R++E S K  ++DAV  R+DG+PIQ++ MR E
Subjt:  MSSNKQLAKTHVERLVEIEEQLLYLREVPDAVRFVESRLEEISIKADKVDAVAGRVDGMPIQELMMRNE
XP_022154605.1 uncharacterized protein LOC111021829 [Momordica charantia]2.0e-1463.77Show/hide
Query:  MSSNKQLAKTHVERLVEIEEQLLYLREVPDAVRFVESRLEEISIKADKVDAVAGRVDGMPIQELMMRNE
        MS+ KQL+K+HV+RLVEIEEQLLYLREVPD++R +E+R++E S K  ++DAV  RVDG+PIQ++ MR E
Subjt:  MSSNKQLAKTHVERLVEIEEQLLYLREVPDAVRFVESRLEEISIKADKVDAVAGRVDGMPIQELMMRNE
XP_022155185.1 uncharacterized protein LOC111022320 [Momordica charantia]5.3e-1563.77Show/hide
Query:  MSSNKQLAKTHVERLVEIEEQLLYLREVPDAVRFVESRLEEISIKADKVDAVAGRVDGMPIQELMMRNE
        MS+ KQL K+H++RLVEIEE+LL+LRE+PD +R+VESRL+EIS KAD +D V  R+DG+ I+ELM+R E
Subjt:  MSSNKQLAKTHVERLVEIEEQLLYLREVPDAVRFVESRLEEISIKADKVDAVAGRVDGMPIQELMMRNE
TrEMBL top hitse value%identityAlignment
A0A5D3BQN3 Retrotrans_gag domain-containing protein6.3e-1465.67Show/hide
Query:  MSSNKQLAKTHVERLVEIEEQLLYLREVPDAVRFVESRLEEISIKADKVDAVAGRVDGMPIQELMMR
        MSS+    K   +RLVEIEEQ+LYL EVPD++R++ESR+EEIS KAD +DAVAGRV+G+PIQEL+ R
Subjt:  MSSNKQLAKTHVERLVEIEEQLLYLREVPDAVRFVESRLEEISIKADKVDAVAGRVDGMPIQELMMR
A0A5D3BYE6 Reverse transcriptase6.3e-1465.67Show/hide
Query:  MSSNKQLAKTHVERLVEIEEQLLYLREVPDAVRFVESRLEEISIKADKVDAVAGRVDGMPIQELMMR
        MSS+  L K   +RLVE+EEQ+LYL EVPD++R++ESRLEEIS K + +DAVAGRV+G PIQELM R
Subjt:  MSSNKQLAKTHVERLVEIEEQLLYLREVPDAVRFVESRLEEISIKADKVDAVAGRVDGMPIQELMMR
A0A6J1D906 Reverse transcriptase2.8e-1462.32Show/hide
Query:  MSSNKQLAKTHVERLVEIEEQLLYLREVPDAVRFVESRLEEISIKADKVDAVAGRVDGMPIQELMMRNE
        MS+ KQL+K+HV+RLVEIEEQLLYLREVPD +R +E+R++E S K  ++DAV  R+DG+PIQ++ MR E
Subjt:  MSSNKQLAKTHVERLVEIEEQLLYLREVPDAVRFVESRLEEISIKADKVDAVAGRVDGMPIQELMMRNE
A0A6J1DK29 uncharacterized protein LOC1110218299.8e-1563.77Show/hide
Query:  MSSNKQLAKTHVERLVEIEEQLLYLREVPDAVRFVESRLEEISIKADKVDAVAGRVDGMPIQELMMRNE
        MS+ KQL+K+HV+RLVEIEEQLLYLREVPD++R +E+R++E S K  ++DAV  RVDG+PIQ++ MR E
Subjt:  MSSNKQLAKTHVERLVEIEEQLLYLREVPDAVRFVESRLEEISIKADKVDAVAGRVDGMPIQELMMRNE
A0A6J1DLQ6 uncharacterized protein LOC1110223202.6e-1563.77Show/hide
Query:  MSSNKQLAKTHVERLVEIEEQLLYLREVPDAVRFVESRLEEISIKADKVDAVAGRVDGMPIQELMMRNE
        MS+ KQL K+H++RLVEIEE+LL+LRE+PD +R+VESRL+EIS KAD +D V  R+DG+ I+ELM+R E
Subjt:  MSSNKQLAKTHVERLVEIEEQLLYLREVPDAVRFVESRLEEISIKADKVDAVAGRVDGMPIQELMMRNE
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTCGGAAGGGTTCATGCCTTGATATGCCCGGATGGATGGATGTCCAGGAAGTCTCGATTATAAGTAAAGCCCATGGGTCGGTTCTCGAGAAGCAGGTCTCGGTAAG
TGTTGAAATCACCCGTGCCGCACAGTCGCGTTACGAGACCCTAAAGACCGCGATTGTGACAGTTGGTATCAGAGCCAGGTTGGCTCCTGAATCAGAAAGCGAAATCATGT
CGTCAAACAAGCAGTTGGCGAAGACCCATGTGGAACGTTTAGTTGAGATTGAAGAGCAGTTGCTCTACTTGAGGGAAGTCCCCGATGCTGTTCGGTTTGTGGAATCTCGA
CTGGAGGAGATTTCGATCAAGGCCGACAAAGTTGATGCGGTAGCTGGCCGCGTGGATGGAATGCCCATCCAAGAACTGATGATGAGGAACGAGGGTAGAGGTTGCGATAT
TCGCCCGTGGTGCCACCGGCGATCCGTTTTCGAGTTGGCTGACTTACCGTCGCGTTACGAGACCCTAAAGACCGCTATTGTGACAGCGCGCGCGCAGGGGTGGGGTCATG
TGCGGGCGTGGCACGTGCTGGAGAGTGTCGCTAACCTCTTAGAGGTTTTTGCCACACACCTTGGCACTTGGGCTTGCTCGCACCCCTTCGCCTATGCCATTGGCCTTGGC
ATGCATGCGAGCGTCCAACCCATCGCATAG
mRNA sequenceShow/hide mRNA sequence
ATGACTCGGAAGGGTTCATGCCTTGATATGCCCGGATGGATGGATGTCCAGGAAGTCTCGATTATAAGTAAAGCCCATGGGTCGGTTCTCGAGAAGCAGGTCTCGGTAAG
TGTTGAAATCACCCGTGCCGCACAGTCGCGTTACGAGACCCTAAAGACCGCGATTGTGACAGTTGGTATCAGAGCCAGGTTGGCTCCTGAATCAGAAAGCGAAATCATGT
CGTCAAACAAGCAGTTGGCGAAGACCCATGTGGAACGTTTAGTTGAGATTGAAGAGCAGTTGCTCTACTTGAGGGAAGTCCCCGATGCTGTTCGGTTTGTGGAATCTCGA
CTGGAGGAGATTTCGATCAAGGCCGACAAAGTTGATGCGGTAGCTGGCCGCGTGGATGGAATGCCCATCCAAGAACTGATGATGAGGAACGAGGGTAGAGGTTGCGATAT
TCGCCCGTGGTGCCACCGGCGATCCGTTTTCGAGTTGGCTGACTTACCGTCGCGTTACGAGACCCTAAAGACCGCTATTGTGACAGCGCGCGCGCAGGGGTGGGGTCATG
TGCGGGCGTGGCACGTGCTGGAGAGTGTCGCTAACCTCTTAGAGGTTTTTGCCACACACCTTGGCACTTGGGCTTGCTCGCACCCCTTCGCCTATGCCATTGGCCTTGGC
ATGCATGCGAGCGTCCAACCCATCGCATAG
Protein sequenceShow/hide protein sequence
MTRKGSCLDMPGWMDVQEVSIISKAHGSVLEKQVSVSVEITRAAQSRYETLKTAIVTVGIRARLAPESESEIMSSNKQLAKTHVERLVEIEEQLLYLREVPDAVRFVESR
LEEISIKADKVDAVAGRVDGMPIQELMMRNEGRGCDIRPWCHRRSVFELADLPSRYETLKTAIVTARAQGWGHVRAWHVLESVANLLEVFATHLGTWACSHPFAYAIGLG
MHASVQPIA