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Spg020928 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg020928
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDNA primase
Genome locationscaffold9:403549..410003
RNA-Seq ExpressionSpg020928
SyntenySpg020928
Gene Ontology termsGO:0006269 - DNA replication, synthesis of RNA primer (biological process)
GO:0003896 - DNA primase activity (molecular function)
InterPro domainsIPR014052 - DNA primase, small subunit, eukaryotic/archaeal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6592333.1 DNA primase small subunit, partial [Cucurbita argyrosperma subsp. sororia]6.3e-2651.33Show/hide
Query:  SSVSNTRWAVSHSVTRIRYVLAQGMRRHVEEIVFSFTYPRLD--------------------------------------------SELLEELNAGDMIV
        + V+  RW    ++ +     +QGMRRHVEEIVFSFTYPRLD                                            ++LLEELNA DM V
Subjt:  SSVSNTRWAVSHSVTRIRYVLAQGMRRHVEEIVFSFTYPRLD--------------------------------------------SELLEELNAGDMIV

Query:  DGETDWDRTSLEGSIRFFRSSFLQPLLKSCKEEIESSYNAKMQQSKNSLS
        D ETDWDRTSL  SIRFFRS+FLQPLLKSCKEEIESSYNAK+QQSKN LS
Subjt:  DGETDWDRTSLEGSIRFFRSSFLQPLLKSCKEEIESSYNAKMQQSKNSLS
XP_004141619.1 DNA primase small subunit [Cucumis sativus]1.2e-2754Show/hide
Query:  SSVSNTRWAVSHSVTRIRYVLAQGMRRHVEEIVFSFTYPRLDSE--------------------------------------------LLEELNAGDMIV
        + V++ RW    S+ +     AQGMRRHVEEIVFSFTYPRLDSE                                            LLEELNA DM V
Subjt:  SSVSNTRWAVSHSVTRIRYVLAQGMRRHVEEIVFSFTYPRLDSE--------------------------------------------LLEELNAGDMIV

Query:  DGETDWDRTSLEGSIRFFRSSFLQPLLKSCKEEIESSYNAKMQQSKNSLS
        D E DWDRTSL  SIRFFRS+FLQPLLKSCKEEIESSYNAK+QQSKNSLS
Subjt:  DGETDWDRTSLEGSIRFFRSSFLQPLLKSCKEEIESSYNAKMQQSKNSLS
XP_022973496.1 DNA primase small subunit [Cucurbita maxima]6.3e-2651.33Show/hide
Query:  SSVSNTRWAVSHSVTRIRYVLAQGMRRHVEEIVFSFTYPRLD--------------------------------------------SELLEELNAGDMIV
        + V+  RW    ++ +     +QGMRRHVEEIVFSFTYPRLD                                            ++LLEELNA DM V
Subjt:  SSVSNTRWAVSHSVTRIRYVLAQGMRRHVEEIVFSFTYPRLD--------------------------------------------SELLEELNAGDMIV

Query:  DGETDWDRTSLEGSIRFFRSSFLQPLLKSCKEEIESSYNAKMQQSKNSLS
        D ETDWDRTSL  SIRFFRS+FLQPLLKSCKEEIESSYNAK+QQSKN LS
Subjt:  DGETDWDRTSLEGSIRFFRSSFLQPLLKSCKEEIESSYNAKMQQSKNSLS
XP_023535939.1 DNA primase small subunit [Cucurbita pepo subsp. pepo]6.3e-2651.33Show/hide
Query:  SSVSNTRWAVSHSVTRIRYVLAQGMRRHVEEIVFSFTYPRLD--------------------------------------------SELLEELNAGDMIV
        + V+  RW    ++ +     +QGMRRHVEEIVFSFTYPRLD                                            ++LLEELNA DM V
Subjt:  SSVSNTRWAVSHSVTRIRYVLAQGMRRHVEEIVFSFTYPRLD--------------------------------------------SELLEELNAGDMIV

Query:  DGETDWDRTSLEGSIRFFRSSFLQPLLKSCKEEIESSYNAKMQQSKNSLS
        D ETDWDRTSL  SIRFFRS+FLQPLLKSCKEEIESSYNAK+QQSKN LS
Subjt:  DGETDWDRTSLEGSIRFFRSSFLQPLLKSCKEEIESSYNAKMQQSKNSLS
XP_038889665.1 DNA primase small subunit [Benincasa hispida]2.8e-2651.33Show/hide
Query:  SSVSNTRWAVSHSVTRIRYVLAQGMRRHVEEIVFSFTYPRLD--------------------------------------------SELLEELNAGDMIV
        + V++ RW    ++ +     AQGMRRHVEEIVFS+TYPRLD                                            ++LLEELNA DM V
Subjt:  SSVSNTRWAVSHSVTRIRYVLAQGMRRHVEEIVFSFTYPRLD--------------------------------------------SELLEELNAGDMIV

Query:  DGETDWDRTSLEGSIRFFRSSFLQPLLKSCKEEIESSYNAKMQQSKNSLS
        DGE  WDRTSL  SIRFFRS+FLQPLLKSCKEEIESSYNAK+QQSKNSLS
Subjt:  DGETDWDRTSLEGSIRFFRSSFLQPLLKSCKEEIESSYNAKMQQSKNSLS
TrEMBL top hitse value%identityAlignment
A0A0A0KUP7 DNA primase5.6e-2854Show/hide
Query:  SSVSNTRWAVSHSVTRIRYVLAQGMRRHVEEIVFSFTYPRLDSE--------------------------------------------LLEELNAGDMIV
        + V++ RW    S+ +     AQGMRRHVEEIVFSFTYPRLDSE                                            LLEELNA DM V
Subjt:  SSVSNTRWAVSHSVTRIRYVLAQGMRRHVEEIVFSFTYPRLDSE--------------------------------------------LLEELNAGDMIV

Query:  DGETDWDRTSLEGSIRFFRSSFLQPLLKSCKEEIESSYNAKMQQSKNSLS
        D E DWDRTSL  SIRFFRS+FLQPLLKSCKEEIESSYNAK+QQSKNSLS
Subjt:  DGETDWDRTSLEGSIRFFRSSFLQPLLKSCKEEIESSYNAKMQQSKNSLS
A0A6J1CKZ3 DNA primase4.4e-2550.31Show/hide
Query:  VSNTRWAVSHSVTRIRYVLAQGMRRHVEEIVFSFTYPRLD--------------------------------------------SELLEELNAGDM----
        V+  RW    S+ +     AQGMRRHVEEIVFSFTYPRLD                                            ++LLEELNA DM    
Subjt:  VSNTRWAVSHSVTRIRYVLAQGMRRHVEEIVFSFTYPRLD--------------------------------------------SELLEELNAGDM----

Query:  ---------IVDGETDWDRTSLEGSIRFFRSSFLQPLLKSCKEEIESSYNAKMQQSKNSLS
                  VDGETDWDRTSL  SIRFFRSSFLQPLLKSCKEEIESSYNAK+QQSKN LS
Subjt:  ---------IVDGETDWDRTSLEGSIRFFRSSFLQPLLKSCKEEIESSYNAKMQQSKNSLS
A0A6J1EEZ9 DNA primase1.5e-2550.67Show/hide
Query:  SSVSNTRWAVSHSVTRIRYVLAQGMRRHVEEIVFSFTYPRLD--------------------------------------------SELLEELNAGDMIV
        + V+  RW    ++ +     + GMRRHVEEIVFSFTYPRLD                                            ++LLEELNA DM V
Subjt:  SSVSNTRWAVSHSVTRIRYVLAQGMRRHVEEIVFSFTYPRLD--------------------------------------------SELLEELNAGDMIV

Query:  DGETDWDRTSLEGSIRFFRSSFLQPLLKSCKEEIESSYNAKMQQSKNSLS
        D ETDWDRTSL  SIRFFRS+FLQPLLKSCKEEIESSYNAK+QQSKN LS
Subjt:  DGETDWDRTSLEGSIRFFRSSFLQPLLKSCKEEIESSYNAKMQQSKNSLS
A0A6J1I8T4 DNA primase3.1e-2651.33Show/hide
Query:  SSVSNTRWAVSHSVTRIRYVLAQGMRRHVEEIVFSFTYPRLD--------------------------------------------SELLEELNAGDMIV
        + V+  RW    ++ +     +QGMRRHVEEIVFSFTYPRLD                                            ++LLEELNA DM V
Subjt:  SSVSNTRWAVSHSVTRIRYVLAQGMRRHVEEIVFSFTYPRLD--------------------------------------------SELLEELNAGDMIV

Query:  DGETDWDRTSLEGSIRFFRSSFLQPLLKSCKEEIESSYNAKMQQSKNSLS
        D ETDWDRTSL  SIRFFRS+FLQPLLKSCKEEIESSYNAK+QQSKN LS
Subjt:  DGETDWDRTSLEGSIRFFRSSFLQPLLKSCKEEIESSYNAKMQQSKNSLS
A0A7J6H2H9 DNA primase4.6e-2246.62Show/hide
Query:  VSNTRWAVSHSVTRIRYVLAQGMRRHVEEIVFSFTYPRLD--------------------------------------------SELLEELNAGDMIVDG
        +S TRW     + +     AQG+RR VEEIVFS+TYPRLD                                            S+LLEELN G M  D 
Subjt:  VSNTRWAVSHSVTRIRYVLAQGMRRHVEEIVFSFTYPRLD--------------------------------------------SELLEELNAGDMIVDG

Query:  ETDWDRTSLEGSIRFFRSSFLQPLLKSCKEEIESSYNAKMQQSKNSLS
        + DWDRTSL  SIRFFR+SFLQPLLKSCKE+IE+SY+AK+Q SKNS+S
Subjt:  ETDWDRTSLEGSIRFFRSSFLQPLLKSCKEEIESSYNAKMQQSKNSLS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G41880.1 DNA primases;DNA primases1.8e-1536.67Show/hide
Query:  SVSNTRWAVSHSVTRIRYVLAQGMRRHVEEIVFSFTYPRLD--------------------------------------------SELLEELNAGDMIVD
        + S  RW       + +   A  +R  VEEIVF+FTYPR+D                                            S+L+EE+N+G + +D
Subjt:  SVSNTRWAVSHSVTRIRYVLAQGMRRHVEEIVFSFTYPRLD--------------------------------------------SELLEELNAGDMIVD

Query:  GETDWDRTSLEG-SIRFFRSSFLQPLLKSCKEEIESSYNAKMQQSKNSLS
         + D   +SL G SI+FFRSSFL+PLLKSCKEEIESSY  K+ ++K+S S
Subjt:  GETDWDRTSLEG-SIRFFRSSFLQPLLKSCKEEIESSYNAKMQQSKNSLS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAACTCATTGCATAGGATACCCCACCCGCATGTCTCCTACATGGATGCTTTGGATCATTTCATCTGTATCGAATACAAGGTGGGCCGTATCACATAGTGTCACCAG
GATAAGATATGTCTTGGCACAAGGAATGCGTAGGCATGTTGAAGAGATTGTTTTCTCTTTTACCTACCCTAGGCTTGATTCGGAGCTTCTAGAAGAACTTAATGCAGGGG
ATATGATAGTAGATGGTGAGACTGATTGGGATAGAACCTCACTTGAGGGATCGATTAGGTTTTTTAGATCGTCATTCTTACAGCCATTACTGAAATCATGCAAGGAGGAG
ATAGAATCTTCGTACAATGCTAAAATGCAACAGTCGAAAAATTCTCTGAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCAAACTCATTGCATAGGATACCCCACCCGCATGTCTCCTACATGGATGCTTTGGATCATTTCATCTGTATCGAATACAAGGTGGGCCGTATCACATAGTGTCACCAG
GATAAGATATGTCTTGGCACAAGGAATGCGTAGGCATGTTGAAGAGATTGTTTTCTCTTTTACCTACCCTAGGCTTGATTCGGAGCTTCTAGAAGAACTTAATGCAGGGG
ATATGATAGTAGATGGTGAGACTGATTGGGATAGAACCTCACTTGAGGGATCGATTAGGTTTTTTAGATCGTCATTCTTACAGCCATTACTGAAATCATGCAAGGAGGAG
ATAGAATCTTCGTACAATGCTAAAATGCAACAGTCGAAAAATTCTCTGAGTTGA
Protein sequenceShow/hide protein sequence
MQTHCIGYPTRMSPTWMLWIISSVSNTRWAVSHSVTRIRYVLAQGMRRHVEEIVFSFTYPRLDSELLEELNAGDMIVDGETDWDRTSLEGSIRFFRSSFLQPLLKSCKEE
IESSYNAKMQQSKNSLS