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Spg020935 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg020935
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold9:3788022..3789841
RNA-Seq ExpressionSpg020935
SyntenySpg020935
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0053276.1 uncharacterized protein E6C27_scaffold102G00750 [Cucumis melo var. makuwa]2.3e-1843.75Show/hide
Query:  KCTTDKIAYQPIFSPFFHHFPFKSLEHLRERVKEEEEEEFRGFEVEE---------AENLESVLSVFGAILDKSV--------GNIVFISSG------YF
        K TTDK+ +Q  F  F HHF  K  E+ +ERVK EEEEEFRG  +++          +NL + ++++  ++  S         GN   + +G       F
Subjt:  KCTTDKIAYQPIFSPFFHHFPFKSLEHLRERVKEEEEEEFRGFEVEE---------AENLESVLSVFGAILDKSV--------GNIVFISSG------YF

Query:  PLSTLSVLRDNDAV-----------VEIELPVPDTLPTSAESSRTSSNTWVELYIESVHI
         LSTLSVLRDNDAV           VEIELP+PDTLPT AES  ++S+TW+ELY ESVH+
Subjt:  PLSTLSVLRDNDAV-----------VEIELPVPDTLPTSAESSRTSSNTWVELYIESVHI
KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]1.6e-1486Show/hide
Query:  FPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSNTWVELYIESVHI
        FPLSTLSVLRDNDAVVEIELPVPDTLPTSAESS ++S+TW+ELY ESVH+
Subjt:  FPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSNTWVELYIESVHI
KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]3.5e-1484Show/hide
Query:  FPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSNTWVELYIESVHI
        FPLSTLSVLRDNDAVVEIELPVPDTLPTSAESS ++S+TW+ELY+E VH+
Subjt:  FPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSNTWVELYIESVHI
TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]1.6e-1486Show/hide
Query:  FPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSNTWVELYIESVHI
        FPLSTLSVLRDNDAVVEIELPVPDTLPTSAESS ++S+TW+ELY ESVH+
Subjt:  FPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSNTWVELYIESVHI
TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]3.5e-1484Show/hide
Query:  FPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSNTWVELYIESVHI
        FPLSTLSVLRDNDAVVEIELPVPDTLPTSAESS ++S+TW+ELY+E VH+
Subjt:  FPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSNTWVELYIESVHI
TrEMBL top hitse value%identityAlignment
A0A5A7UGD0 Uncharacterized protein1.1e-1843.75Show/hide
Query:  KCTTDKIAYQPIFSPFFHHFPFKSLEHLRERVKEEEEEEFRGFEVEE---------AENLESVLSVFGAILDKSV--------GNIVFISSG------YF
        K TTDK+ +Q  F  F HHF  K  E+ +ERVK EEEEEFRG  +++          +NL + ++++  ++  S         GN   + +G       F
Subjt:  KCTTDKIAYQPIFSPFFHHFPFKSLEHLRERVKEEEEEEFRGFEVEE---------AENLESVLSVFGAILDKSV--------GNIVFISSG------YF

Query:  PLSTLSVLRDNDAV-----------VEIELPVPDTLPTSAESSRTSSNTWVELYIESVHI
         LSTLSVLRDNDAV           VEIELP+PDTLPT AES  ++S+TW+ELY ESVH+
Subjt:  PLSTLSVLRDNDAV-----------VEIELPVPDTLPTSAESSRTSSNTWVELYIESVHI
A0A5A7V9N3 Reverse transcriptase7.6e-1586Show/hide
Query:  FPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSNTWVELYIESVHI
        FPLSTLSVLRDNDAVVEIELPVPDTLPTSAESS ++S+TW+ELY ESVH+
Subjt:  FPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSNTWVELYIESVHI
A0A5A7VMG9 Reverse transcriptase1.7e-1484Show/hide
Query:  FPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSNTWVELYIESVHI
        FPLSTLSVLRDNDAVVEIELPVPDTLPTSAESS ++S+TW+ELY+E VH+
Subjt:  FPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSNTWVELYIESVHI
A0A5D3DSY7 Putative Retrotransposon protein7.6e-1586Show/hide
Query:  FPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSNTWVELYIESVHI
        FPLSTLSVLRDNDAVVEIELPVPDTLPTSAESS ++S+TW+ELY ESVH+
Subjt:  FPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSNTWVELYIESVHI
A0A5D3DX39 Reverse transcriptase1.7e-1484Show/hide
Query:  FPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSNTWVELYIESVHI
        FPLSTLSVLRDNDAVVEIELPVPDTLPTSAESS ++S+TW+ELY+E VH+
Subjt:  FPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSRTSSNTWVELYIESVHI
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAATGACAACAAGAAATGCACCACCGACAAGATTGCTTATCAGCCCATCTTCAGTCCATTTTTCCATCATTTTCCATTCAAATCTTTAGAGCACTTGAGGGAGAG
AGTGAAGGAAGAAGAAGAAGAAGAATTTCGTGGTTTTGAGGTTGAAGAAGCAGAGAACCTCGAATCTGTGTTGTCTGTGTTCGGGGCAATTCTGGACAAATCGGTTGGGA
ATATCGTTTTCATTTCTTCAGGTTATTTTCCGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACG
TCTGCTGAAAGTTCCAGAACAAGCTCTAATACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGAAATGACAACAAGAAATGCACCACCGACAAGATTGCTTATCAGCCCATCTTCAGTCCATTTTTCCATCATTTTCCATTCAAATCTTTAGAGCACTTGAGGGAGAG
AGTGAAGGAAGAAGAAGAAGAAGAATTTCGTGGTTTTGAGGTTGAAGAAGCAGAGAACCTCGAATCTGTGTTGTCTGTGTTCGGGGCAATTCTGGACAAATCGGTTGGGA
ATATCGTTTTCATTTCTTCAGGTTATTTTCCGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACG
TCTGCTGAAAGTTCCAGAACAAGCTCTAATACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTAA
Protein sequenceShow/hide protein sequence
MGNDNKKCTTDKIAYQPIFSPFFHHFPFKSLEHLRERVKEEEEEEFRGFEVEEAENLESVLSVFGAILDKSVGNIVFISSGYFPLSTLSVLRDNDAVVEIELPVPDTLPT
SAESSRTSSNTWVELYIESVHIVNVL