CuGenDBv2

Gene ID	Spg020940
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	WD repeat-containing protein 43
Genome location	scaffold9:540498..541934
RNA-Seq Expression	Spg020940
Synteny	Spg020940
Gene Ontology terms	GO:0006364 - rRNA processing (biological process) GO:0005730 - nucleolus (cellular component)
InterPro domains	IPR007148 - Small-subunit processome, Utp12

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022150139.1 WD repeat-containing protein 43 [Momordica charantia]

3.2e-95

81.51

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Query:  GPHVTEQAVTTPKSKKRKKKRAASDLDSLTVGDVSDVGNGNASDVLFNDDLNEPTMGEKLASLNLEDQNEEEDREQ-EPSVPAIPPSADSVQVLLKQALH
        GPH  EQAVTTPKSKK KKKRAASD+DSLT GDVS VGNG+ASDVLFNDD+NEPTMGEKLASLNL DQ+E+E  EQ EPSVPAIPPSADSVQVLLKQALH
Subjt:  GPHVTEQAVTTPKSKKRKKKRAASDLDSLTVGDVSDVGNGNASDVLFNDDLNEPTMGEKLASLNLEDQNEEEDREQ-EPSVPAIPPSADSVQVLLKQALH

Query:  ADDRALLLECLYTKDDKVISKSIAQLNSSDVLKLLHSLISIIQSRGAILVCALPWLRGLLLQHASRIMSQESSLLALNSLYQ------------------
        ADDRALLLECLYTKDDKVISKSIAQLNSSDVLKLLHSLISIIQSRGAILVCALPWLRGLLLQHASRIMSQESSLLALNSLYQ                  
Subjt:  ADDRALLLECLYTKDDKVISKSIAQLNSSDVLKLLHSLISIIQSRGAILVCALPWLRGLLLQHASRIMSQESSLLALNSLYQ------------------

Query:  -------VLDDEVDENDAIVPITYE-EDDSDDKESGDEMETDEDDEENEEVEVAFEDLSAGEVDD
               VLD+EVD+NDAIVPI YE EDDSDD+ESGDEMETDED+EE EE E AF DLSAGEVDD
Subjt:  -------VLDDEVDENDAIVPITYE-EDDSDDKESGDEMETDEDDEENEEVEVAFEDLSAGEVDD

XP_022964606.1 WD repeat-containing protein 43 isoform X1 [Cucurbita moschata]

3.7e-91

78.15

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Query:  GPHVTEQAVTTPKSKKRKKKRAASDLDSLTVGDVSDVGNGNASDVLFNDDLNEPTMGEKLASLNLEDQNEEEDREQ-EPSVPAIPPSADSVQVLLKQALH
        GPH  +QAVT+PKSKK KKKRAASDLDS   GDVSDVGN + S+VLFNDDLNEPTMG+KLASLNLE+QNE+E+ EQ EPSVPAIPPSADSVQVLLKQAL 
Subjt:  GPHVTEQAVTTPKSKKRKKKRAASDLDSLTVGDVSDVGNGNASDVLFNDDLNEPTMGEKLASLNLEDQNEEEDREQ-EPSVPAIPPSADSVQVLLKQALH

Query:  ADDRALLLECLYTKDDKVISKSIAQLNSSDVLKLLHSLISIIQSRGAILVCALPWLRGLLLQHASRIMSQESSLLALNSLYQ------------------
        ADDRALLLECLYTKDDKVISKSIAQLNSSDVLKLLH+LISIIQSRGAILVCA+PWLRGLLLQHASRIMSQESSLLALNSLYQ                  
Subjt:  ADDRALLLECLYTKDDKVISKSIAQLNSSDVLKLLHSLISIIQSRGAILVCALPWLRGLLLQHASRIMSQESSLLALNSLYQ------------------

Query:  -------VLDDEVDENDAIVPITYEEDDSDDKE-SGDEMETDEDDEENEEVEV-AFEDLSAGEVDDDMSE
               VLD+E +ENDAIVPI YEEDDSDDKE SGDEMET   DEE   VEV AF+DLSAGEVDDDMSE
Subjt:  -------VLDDEVDENDAIVPITYEEDDSDDKE-SGDEMETDEDDEENEEVEV-AFEDLSAGEVDDDMSE

XP_023000348.1 WD repeat-containing protein 43 [Cucurbita maxima]

2.6e-92

78.44

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Query:  GPHVTEQAVTTPKSKKRKKKRAASDLDSLTVGDVSDVGNGNASDVLFNDDLNEPTMGEKLASLNLEDQNEEEDREQ-EPSVPAIPPSADSVQVLLKQALH
        GPH  EQAVT+PKSKK KKKRAASDLDS T GDVSDVGN + S+VLFNDDLNEPTMG+KLA+LNLE+QNE+E+ EQ EPSVPAIPPSADSVQVLLKQAL 
Subjt:  GPHVTEQAVTTPKSKKRKKKRAASDLDSLTVGDVSDVGNGNASDVLFNDDLNEPTMGEKLASLNLEDQNEEEDREQ-EPSVPAIPPSADSVQVLLKQALH

Query:  ADDRALLLECLYTKDDKVISKSIAQLNSSDVLKLLHSLISIIQSRGAILVCALPWLRGLLLQHASRIMSQESSLLALNSLYQ------------------
        ADDRALLLECLYTKDDKVISKSIAQLNSSDVLKLLH+LISIIQSRGAILVCA+PWLRGLLLQHASRIMSQESSLLALNSLYQ                  
Subjt:  ADDRALLLECLYTKDDKVISKSIAQLNSSDVLKLLHSLISIIQSRGAILVCALPWLRGLLLQHASRIMSQESSLLALNSLYQ------------------

Query:  -------VLDDEVDENDAIVPITYEEDDSDDKE-SGDEMETDEDDEENEEVEVAFEDLSAGEVDDDMSE
               VLD E +ENDAIVPI YEEDDSDDKE SGDEMETDE+     EVE AF+DLSAGEVDDDMSE
Subjt:  -------VLDDEVDENDAIVPITYEEDDSDDKE-SGDEMETDEDDEENEEVEVAFEDLSAGEVDDDMSE

XP_023513462.1 WD repeat-containing protein 43 [Cucurbita pepo subsp. pepo]

1.5e-92

79.26

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Query:  GPHVTEQAVTTPKSKKRKKKRAASDLDSLTVGDVSDVGNGNASDVLFNDDLNEPTMGEKLASLNLEDQNEEEDREQ-EPSVPAIPPSADSVQVLLKQALH
        GPH  EQAVT+PKSKK KKKRAASDLDS T GDVSDVGN + S+VLFNDDLNEPTMG+KLASLNLEDQNE+E+ EQ EPSVPAIPPSADSVQVLLKQAL 
Subjt:  GPHVTEQAVTTPKSKKRKKKRAASDLDSLTVGDVSDVGNGNASDVLFNDDLNEPTMGEKLASLNLEDQNEEEDREQ-EPSVPAIPPSADSVQVLLKQALH

Query:  ADDRALLLECLYTKDDKVISKSIAQLNSSDVLKLLHSLISIIQSRGAILVCALPWLRGLLLQHASRIMSQESSLLALNSLYQ------------------
        ADDRALLLECLYTKDDKVISKSIAQLNSSDVLKLLH+LISIIQSRGAILVCA+PWLRGLLLQHASRIMSQESSLLALNSLYQ                  
Subjt:  ADDRALLLECLYTKDDKVISKSIAQLNSSDVLKLLHSLISIIQSRGAILVCALPWLRGLLLQHASRIMSQESSLLALNSLYQ------------------

Query:  -------VLDDEVDENDAIVPITYEEDDSDDKE-SGDEMETDEDDEENEEVEV-AFEDLSAGEVDDDMSE
               VLD E +ENDAIVPI YEEDDSDDKE SGDEMET   DEE   VEV AF+DLSAGEVDDDMSE
Subjt:  -------VLDDEVDENDAIVPITYEEDDSDDKE-SGDEMETDEDDEENEEVEV-AFEDLSAGEVDDDMSE

XP_038899613.1 WD repeat-containing protein 43 [Benincasa hispida]

3.1e-98

80.9

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Query:  GPHVTEQAVTTPKSKKRKKKRAASDLDSLTVGDVSDVGNGNASDVLFNDDLNEPTMGEKLASLNLEDQNEEEDREQEPSVPAIPPSADSVQVLLKQALHA
        GPH  EQ V TPKSKK KKKRAASDLDSLT GD+SDVGNG+ASDV+FNDDLNEP+MGEKLASLNL DQNE+E RE+EPSVPAIPPSADSVQVLLKQALHA
Subjt:  GPHVTEQAVTTPKSKKRKKKRAASDLDSLTVGDVSDVGNGNASDVLFNDDLNEPTMGEKLASLNLEDQNEEEDREQEPSVPAIPPSADSVQVLLKQALHA

Query:  DDRALLLECLYTKDDKVISKSIAQLNSSDVLKLLHSLISIIQSRGAILVCALPWLRGLLLQHASRIMSQESSLLALNSLYQ-------------------
        +DR LLLECLYTKDDKVISKSIAQLNSSDVLKLLHSLIS IQSRGAILVC LPWLRGLLLQHAS+IMSQESSLLALNSLYQ                   
Subjt:  DDRALLLECLYTKDDKVISKSIAQLNSSDVLKLLHSLISIIQSRGAILVCALPWLRGLLLQHASRIMSQESSLLALNSLYQ-------------------

Query:  ------VLDDEVDENDAIVPITYEEDDSDDKESGDEMETDEDDEENEEVEVAFEDLSAGEVDDDMSE
              VLD+EVDENDAIVPI YEEDDSDDKESGDEMETDE DEE +EVE AF+DLSAGEVDDDMSE
Subjt:  ------VLDDEVDENDAIVPITYEEDDSDDKESGDEMETDEDDEENEEVEVAFEDLSAGEVDDDMSE

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CDX9 WD repeat-containing protein 43

2.4e-91

77.99

Show/hide

Query:  GPHVTEQAVTTPKSKKRKKKRAASDLDSLTVGDVSDVGNGNASDVLFNDDLNEPTMGEKLASLNLEDQNEEEDREQE-PSVPAIPPSADSVQVLLKQALH
        GPH  EQ V TPKSKK KKKRAASDLDS T GDVSDVGNG+ASDV+FNDDLNEP+MGEKLASLNL DQNE+  REQE PSVP IPPSADSVQVLLKQALH
Subjt:  GPHVTEQAVTTPKSKKRKKKRAASDLDSLTVGDVSDVGNGNASDVLFNDDLNEPTMGEKLASLNLEDQNEEEDREQE-PSVPAIPPSADSVQVLLKQALH

Query:  ADDRALLLECLYTKDDKVISKSIAQLNSSDVLKLLHSLISIIQSRGAILVCALPWLRGLLLQHASRIMSQESSLLALNSLYQ------------------
        ADD ALLLECLYTKDDKVISKSIAQLNSSDVLKLLHS+IS IQSRGAILVCALPWLRGLLLQHAS+IMSQESSLLALNSLYQ                  
Subjt:  ADDRALLLECLYTKDDKVISKSIAQLNSSDVLKLLHSLISIIQSRGAILVCALPWLRGLLLQHASRIMSQESSLLALNSLYQ------------------

Query:  -------VLDDEVDENDAIVPITYEEDDSDDKESGDEMETDEDDEENEEVEVAFEDLSAGEVDDDMSE
               VLD+E ++NDAIVPI YEE+DSD+ E+GDEMETDEDD E +EVE AF+DLSAGEVDDDMSE
Subjt:  -------VLDDEVDENDAIVPITYEEDDSDDKESGDEMETDEDDEENEEVEVAFEDLSAGEVDDDMSE

A0A6J1D938 WD repeat-containing protein 43

1.6e-95

81.51

Show/hide

Query:  GPHVTEQAVTTPKSKKRKKKRAASDLDSLTVGDVSDVGNGNASDVLFNDDLNEPTMGEKLASLNLEDQNEEEDREQ-EPSVPAIPPSADSVQVLLKQALH
        GPH  EQAVTTPKSKK KKKRAASD+DSLT GDVS VGNG+ASDVLFNDD+NEPTMGEKLASLNL DQ+E+E  EQ EPSVPAIPPSADSVQVLLKQALH
Subjt:  GPHVTEQAVTTPKSKKRKKKRAASDLDSLTVGDVSDVGNGNASDVLFNDDLNEPTMGEKLASLNLEDQNEEEDREQ-EPSVPAIPPSADSVQVLLKQALH

Query:  ADDRALLLECLYTKDDKVISKSIAQLNSSDVLKLLHSLISIIQSRGAILVCALPWLRGLLLQHASRIMSQESSLLALNSLYQ------------------
        ADDRALLLECLYTKDDKVISKSIAQLNSSDVLKLLHSLISIIQSRGAILVCALPWLRGLLLQHASRIMSQESSLLALNSLYQ                  
Subjt:  ADDRALLLECLYTKDDKVISKSIAQLNSSDVLKLLHSLISIIQSRGAILVCALPWLRGLLLQHASRIMSQESSLLALNSLYQ------------------

Query:  -------VLDDEVDENDAIVPITYE-EDDSDDKESGDEMETDEDDEENEEVEVAFEDLSAGEVDD
               VLD+EVD+NDAIVPI YE EDDSDD+ESGDEMETDED+EE EE E AF DLSAGEVDD
Subjt:  -------VLDDEVDENDAIVPITYE-EDDSDDKESGDEMETDEDDEENEEVEVAFEDLSAGEVDD

A0A6J1HI85 WD repeat-containing protein 43 isoform X2

1.8e-91

78.15

Show/hide

Query:  GPHVTEQAVTTPKSKKRKKKRAASDLDSLTVGDVSDVGNGNASDVLFNDDLNEPTMGEKLASLNLEDQNEEEDREQ-EPSVPAIPPSADSVQVLLKQALH
        GPH  +QAVT+PKSKK KKKRAASDLDS   GDVSDVGN + S+VLFNDDLNEPTMG+KLASLNLE+QNE+E+ EQ EPSVPAIPPSADSVQVLLKQAL 
Subjt:  GPHVTEQAVTTPKSKKRKKKRAASDLDSLTVGDVSDVGNGNASDVLFNDDLNEPTMGEKLASLNLEDQNEEEDREQ-EPSVPAIPPSADSVQVLLKQALH

Query:  ADDRALLLECLYTKDDKVISKSIAQLNSSDVLKLLHSLISIIQSRGAILVCALPWLRGLLLQHASRIMSQESSLLALNSLYQ------------------
        ADDRALLLECLYTKDDKVISKSIAQLNSSDVLKLLH+LISIIQSRGAILVCA+PWLRGLLLQHASRIMSQESSLLALNSLYQ                  
Subjt:  ADDRALLLECLYTKDDKVISKSIAQLNSSDVLKLLHSLISIIQSRGAILVCALPWLRGLLLQHASRIMSQESSLLALNSLYQ------------------

Query:  -------VLDDEVDENDAIVPITYEEDDSDDKE-SGDEMETDEDDEENEEVEV-AFEDLSAGEVDDDMSE
               VLD+E +ENDAIVPI YEEDDSDDKE SGDEMET   DEE   VEV AF+DLSAGEVDDDMSE
Subjt:  -------VLDDEVDENDAIVPITYEEDDSDDKE-SGDEMETDEDDEENEEVEV-AFEDLSAGEVDDDMSE

A0A6J1HJF3 WD repeat-containing protein 43 isoform X1

1.8e-91

78.15

Show/hide

Query:  GPHVTEQAVTTPKSKKRKKKRAASDLDSLTVGDVSDVGNGNASDVLFNDDLNEPTMGEKLASLNLEDQNEEEDREQ-EPSVPAIPPSADSVQVLLKQALH
        GPH  +QAVT+PKSKK KKKRAASDLDS   GDVSDVGN + S+VLFNDDLNEPTMG+KLASLNLE+QNE+E+ EQ EPSVPAIPPSADSVQVLLKQAL 
Subjt:  GPHVTEQAVTTPKSKKRKKKRAASDLDSLTVGDVSDVGNGNASDVLFNDDLNEPTMGEKLASLNLEDQNEEEDREQ-EPSVPAIPPSADSVQVLLKQALH

Query:  ADDRALLLECLYTKDDKVISKSIAQLNSSDVLKLLHSLISIIQSRGAILVCALPWLRGLLLQHASRIMSQESSLLALNSLYQ------------------
        ADDRALLLECLYTKDDKVISKSIAQLNSSDVLKLLH+LISIIQSRGAILVCA+PWLRGLLLQHASRIMSQESSLLALNSLYQ                  
Subjt:  ADDRALLLECLYTKDDKVISKSIAQLNSSDVLKLLHSLISIIQSRGAILVCALPWLRGLLLQHASRIMSQESSLLALNSLYQ------------------

Query:  -------VLDDEVDENDAIVPITYEEDDSDDKE-SGDEMETDEDDEENEEVEV-AFEDLSAGEVDDDMSE
               VLD+E +ENDAIVPI YEEDDSDDKE SGDEMET   DEE   VEV AF+DLSAGEVDDDMSE
Subjt:  -------VLDDEVDENDAIVPITYEEDDSDDKE-SGDEMETDEDDEENEEVEV-AFEDLSAGEVDDDMSE

A0A6J1KMD0 WD repeat-containing protein 43

1.2e-92

78.44

Show/hide

Query:  GPHVTEQAVTTPKSKKRKKKRAASDLDSLTVGDVSDVGNGNASDVLFNDDLNEPTMGEKLASLNLEDQNEEEDREQ-EPSVPAIPPSADSVQVLLKQALH
        GPH  EQAVT+PKSKK KKKRAASDLDS T GDVSDVGN + S+VLFNDDLNEPTMG+KLA+LNLE+QNE+E+ EQ EPSVPAIPPSADSVQVLLKQAL 
Subjt:  GPHVTEQAVTTPKSKKRKKKRAASDLDSLTVGDVSDVGNGNASDVLFNDDLNEPTMGEKLASLNLEDQNEEEDREQ-EPSVPAIPPSADSVQVLLKQALH

Query:  ADDRALLLECLYTKDDKVISKSIAQLNSSDVLKLLHSLISIIQSRGAILVCALPWLRGLLLQHASRIMSQESSLLALNSLYQ------------------
        ADDRALLLECLYTKDDKVISKSIAQLNSSDVLKLLH+LISIIQSRGAILVCA+PWLRGLLLQHASRIMSQESSLLALNSLYQ                  
Subjt:  ADDRALLLECLYTKDDKVISKSIAQLNSSDVLKLLHSLISIIQSRGAILVCALPWLRGLLLQHASRIMSQESSLLALNSLYQ------------------

Query:  -------VLDDEVDENDAIVPITYEEDDSDDKE-SGDEMETDEDDEENEEVEVAFEDLSAGEVDDDMSE
               VLD E +ENDAIVPI YEEDDSDDKE SGDEMETDE+     EVE AF+DLSAGEVDDDMSE
Subjt:  -------VLDDEVDENDAIVPITYEEDDSDDKE-SGDEMETDEDDEENEEVEVAFEDLSAGEVDDDMSE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G15420.1 CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp12 (InterPro:IPR007148); Has 764 Blast hits to 656 proteins in 193 species: Archae - 0; Bacteria - 42; Metazoa - 237; Fungi - 154; Plants - 85; Viruses - 23; Other Eukaryotes - 223 (source: NCBI BLink).

6.4e-41

43.94

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Query:  VTEQAVTTPKSKKRKKKRAASDLDSLTVGDVSDVGNGNASD-VLFNDDLNEPTMGEKLASLNL---EDQNEEEDREQEPSVPAIPPSADSVQVLLKQALH
        + +  +   K KK+ KKRA  + D   +    D G     D VL +D LNEPT+G+KL SL+L   E  N EE           PP+A SV VLL+QALH
Subjt:  VTEQAVTTPKSKKRKKKRAASDLDSLTVGDVSDVGNGNASD-VLFNDDLNEPTMGEKLASLNL---EDQNEEEDREQEPSVPAIPPSADSVQVLLKQALH

Query:  ADDRALLLECLYTKDDKVISKSIAQLNSSDVLKLLHSLISIIQSRGAILVCALPWLRGLLLQHASRIMSQESSLLALNSLYQVLD---------------
        ADDR+LLL+CLY +D++VI+ S+A+LNS++VLKLL++L+ I+QSRGAIL C +PW++ LLL H+S IMSQESSLLALN++YQ+++               
Subjt:  ADDRALLLECLYTKDDKVISKSIAQLNSSDVLKLLHSLISIIQSRGAILVCALPWLRGLLLQHASRIMSQESSLLALNSLYQVLD---------------

Query:  -----DEVDENDAIVPITYEEDDSD-DKESGDEMETDEDDEENEEVEVAFEDLSAGEVDDDMSE
             D++DE +   P+ YE+ DSD D+E G E   + D+E ++  + A + ++  E  DDMS+
Subjt:  -----DEVDENDAIVPITYEEDDSD-DKESGDEMETDEDDEENEEVEVAFEDLSAGEVDDDMSE

Sequences

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CDS sequence

Show/hide CDS sequence

ATGTCAGGTCCCCATGTGACCGAACAGGCAGTTACAACACCTAAAAGTAAGAAAAGAAAAAAGAAAAGAGCAGCATCTGATCTTGATAGTCTGACAGTTGGAGATGTCAG
TGACGTTGGCAATGGCAATGCTTCCGATGTTCTATTTAACGATGATTTAAATGAGCCAACCATGGGAGAGAAACTTGCAAGTTTGAATTTGGAAGACCAGAATGAAGAGG
AAGATCGTGAACAAGAACCATCCGTCCCTGCGATACCACCAAGTGCGGACTCTGTTCAGGTTTTGCTTAAGCAAGCACTACATGCAGACGATCGTGCCCTTTTGCTAGAA
TGCTTATATACCAAGGATGATAAGGTTATTTCAAAATCAATAGCACAATTAAATTCATCTGATGTTCTCAAGCTTTTACACTCTCTGATATCCATTATCCAATCGAGAGG
GGCCATTCTTGTATGCGCCCTCCCTTGGCTGAGAGGTTTACTTCTCCAACATGCTAGTAGAATAATGTCTCAAGAATCTTCTTTACTCGCCTTGAATTCTCTATATCAGG
TCCTTGACGACGAGGTGGACGAAAATGATGCCATTGTGCCGATTACTTACGAGGAGGACGATAGCGACGATAAGGAATCAGGAGACGAAATGGAAACTGATGAAGATGAT
GAAGAGAATGAAGAAGTAGAAGTAGCCTTTGAGGATCTTAGTGCTGGTGAAGTGGATGATGACATGAGTGAATGA

mRNA sequence

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Protein sequence

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MSGPHVTEQAVTTPKSKKRKKKRAASDLDSLTVGDVSDVGNGNASDVLFNDDLNEPTMGEKLASLNLEDQNEEEDREQEPSVPAIPPSADSVQVLLKQALHADDRALLLE
CLYTKDDKVISKSIAQLNSSDVLKLLHSLISIIQSRGAILVCALPWLRGLLLQHASRIMSQESSLLALNSLYQVLDDEVDENDAIVPITYEEDDSDDKESGDEMETDEDD
EENEEVEVAFEDLSAGEVDDDMSE

Spg020940 (gene) of Sponge gourd (cylindrica) v1 genome