CuGenDBv2

Gene ID	Spg020952
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	RNA polymerase II C-terminal domain phosphatase-like
Genome location	scaffold9:4158747..4167238
RNA-Seq Expression	Spg020952
Synteny	Spg020952
Gene Ontology terms	GO:0070940 - dephosphorylation of RNA polymerase II C-terminal domain (biological process) GO:0005634 - nucleus (cellular component) GO:0008420 - RNA polymerase II CTD heptapeptide repeat phosphatase activity (molecular function)
InterPro domains	IPR039189 - CTD phosphatase Fcp1

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6607512.1 RNA polymerase II C-terminal domain phosphatase-like 4, partial [Cucurbita argyrosperma subsp. sororia]

2.1e-44

82.79

Show/hide

Query:  RLLGSTSEWMSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERIKRRKVEKLENPEEDILYGVERQSSEVLSKQQLCSHPGSFGN
        +L  +    MS+VTNSPAHSSSSDDFAAFLDVALDSHSSDSSP+EKAEG NN VE+ERIKR KVEKLEN  EDILYGVE  SSEVLSKQQLCSHPGSFGN
Subjt:  RLLGSTSEWMSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERIKRRKVEKLENPEEDILYGVERQSSEVLSKQQLCSHPGSFGN

Query:  MCIVCVQRLDEVSGVTFGYIHK
        MCI+C QRLDE SGVTFGYIHK
Subjt:  MCIVCVQRLDEVSGVTFGYIHK

KAG7037160.1 RNA polymerase II C-terminal domain phosphatase-like 4 [Cucurbita argyrosperma subsp. argyrosperma]

2.1e-44

82.79

Show/hide

Query:  RLLGSTSEWMSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERIKRRKVEKLENPEEDILYGVERQSSEVLSKQQLCSHPGSFGN
        +L  +    MS+VTNSPAHSSSSDDFAAFLDVALDSHSSDSSP+EKAEG NN VE+ERIKR KVEKLEN  EDILYGVE  SSEVLSKQQLCSHPGSFGN
Subjt:  RLLGSTSEWMSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERIKRRKVEKLENPEEDILYGVERQSSEVLSKQQLCSHPGSFGN

Query:  MCIVCVQRLDEVSGVTFGYIHK
        MCI+C QRLDE SGVTFGYIHK
Subjt:  MCIVCVQRLDEVSGVTFGYIHK

XP_022133134.1 RNA polymerase II C-terminal domain phosphatase-like 4 isoform X1 [Momordica charantia]

4.6e-44

87.07

Show/hide

Query:  MSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERIKRRKVEKL---ENPEEDILYGVERQSSEVLSKQQLCSHPGSFGNMCIVCV
        MS+VTNSPAHSSSSDDFAAFLDVALDSHSSDSSP+EKAEGDNN VESER+KRRKVE+L   E P+EDI YGVE QSSEVLSKQQLCSHPGSFGNMCI+C 
Subjt:  MSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERIKRRKVEKL---ENPEEDILYGVERQSSEVLSKQQLCSHPGSFGNMCIVCV

Query:  QRLDEVSGVTFGYIHK
        QRLDE SGVTFGYIHK
Subjt:  QRLDEVSGVTFGYIHK

XP_023525838.1 RNA polymerase II C-terminal domain phosphatase-like 4 [Cucurbita pepo subsp. pepo]

2.7e-44

88.5

Show/hide

Query:  MSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERIKRRKVEKLENPEEDILYGVERQSSEVLSKQQLCSHPGSFGNMCIVCVQRL
        MS+VTNSPAHSSSSDDFAAFLDVALDSHSSDSSP+EKAEG NN VE+ERIKR KVEKLEN  EDILYGVE  SSEVLSKQQLCSHPGSFGNMCI+C QRL
Subjt:  MSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERIKRRKVEKLENPEEDILYGVERQSSEVLSKQQLCSHPGSFGNMCIVCVQRL

Query:  DEVSGVTFGYIHK
        DE SGVTFGYIHK
Subjt:  DEVSGVTFGYIHK

XP_038890381.1 RNA polymerase II C-terminal domain phosphatase-like 4 isoform X1 [Benincasa hispida]

2.4e-45

89.38

Show/hide

Query:  MSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERIKRRKVEKLENPEEDILYGVERQSSEVLSKQQLCSHPGSFGNMCIVCVQRL
        MS+ TNSPAHSSSSDDFAAFLDVALDSHSSDSSP EKAEGDNN  ESERIKRRKVEKLEN EEDILYGVE QSSE +SKQQLCSHPGSFGNMCI+C QRL
Subjt:  MSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERIKRRKVEKLENPEEDILYGVERQSSEVLSKQQLCSHPGSFGNMCIVCVQRL

Query:  DEVSGVTFGYIHK
        DE SGVTFGYIHK
Subjt:  DEVSGVTFGYIHK

TrEMBL top hits

e value

%identity

Alignment

A0A6J1BUF9 RNA polymerase II C-terminal domain phosphatase-like

2.2e-44

87.07

Show/hide

Query:  MSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERIKRRKVEKL---ENPEEDILYGVERQSSEVLSKQQLCSHPGSFGNMCIVCV
        MS+VTNSPAHSSSSDDFAAFLDVALDSHSSDSSP+EKAEGDNN VESER+KRRKVE+L   E P+EDI YGVE QSSEVLSKQQLCSHPGSFGNMCI+C 
Subjt:  MSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERIKRRKVEKL---ENPEEDILYGVERQSSEVLSKQQLCSHPGSFGNMCIVCV

Query:  QRLDEVSGVTFGYIHK
        QRLDE SGVTFGYIHK
Subjt:  QRLDEVSGVTFGYIHK

A0A6J1BV42 RNA polymerase II C-terminal domain phosphatase-like

2.2e-44

87.07

Show/hide

Query:  MSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERIKRRKVEKL---ENPEEDILYGVERQSSEVLSKQQLCSHPGSFGNMCIVCV
        MS+VTNSPAHSSSSDDFAAFLDVALDSHSSDSSP+EKAEGDNN VESER+KRRKVE+L   E P+EDI YGVE QSSEVLSKQQLCSHPGSFGNMCI+C 
Subjt:  MSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERIKRRKVEKL---ENPEEDILYGVERQSSEVLSKQQLCSHPGSFGNMCIVCV

Query:  QRLDEVSGVTFGYIHK
        QRLDE SGVTFGYIHK
Subjt:  QRLDEVSGVTFGYIHK

A0A6J1CJQ5 RNA polymerase II C-terminal domain phosphatase-like

4.2e-43

85.34

Show/hide

Query:  MSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERIKRRKVEKL---ENPEEDILYGVERQSSEVLSKQQLCSHPGSFGNMCIVCV
        MS+VT+SPAHSSSSDDFAAFLDVALDSHSSDSSP+EKAEGDNN VESERIKRRKVEKL   E P+EDI+Y VE QSSEVLSKQQLC HPGSFGNMCI+C 
Subjt:  MSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERIKRRKVEKL---ENPEEDILYGVERQSSEVLSKQQLCSHPGSFGNMCIVCV

Query:  QRLDEVSGVTFGYIHK
        QRLD  SGVTFGYIHK
Subjt:  QRLDEVSGVTFGYIHK

A0A6J1GC38 RNA polymerase II C-terminal domain phosphatase-like

1.9e-43

87.61

Show/hide

Query:  MSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERIKRRKVEKLENPEEDILYGVERQSSEVLSKQQLCSHPGSFGNMCIVCVQRL
        MS+VTNS AHSSSSDDFAAFLDVALDSHSSDSSP+EKAEG NN VE+ERIKR KVEKLEN  EDILYGVE  SSEVLSKQQLCSHPGSFGNMCI+C QRL
Subjt:  MSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERIKRRKVEKLENPEEDILYGVERQSSEVLSKQQLCSHPGSFGNMCIVCVQRL

Query:  DEVSGVTFGYIHK
        DE SGVTFGYIHK
Subjt:  DEVSGVTFGYIHK

A0A6J1ID30 RNA polymerase II C-terminal domain phosphatase-like

6.5e-44

87.61

Show/hide

Query:  MSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERIKRRKVEKLENPEEDILYGVERQSSEVLSKQQLCSHPGSFGNMCIVCVQRL
        MS+VTNSPAHSSSSDDFAAFLDVALDSHSSDS P+EKAEG NN VE+ERIKR KVEKLEN  EDILYGVE  SSEVLSKQQLCSHPGSFGNMCI+C QRL
Subjt:  MSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERIKRRKVEKLENPEEDILYGVERQSSEVLSKQQLCSHPGSFGNMCIVCVQRL

Query:  DEVSGVTFGYIHK
        DE SGVTFGYIHK
Subjt:  DEVSGVTFGYIHK

SwissProt top hits

e value

%identity

Alignment

Q00IB6 RNA polymerase II C-terminal domain phosphatase-like 4

2.1e-15

48.28

Show/hide

Query:  MSIVTNSPAH-SSSSDDFAAFLDVALDSHSSDSS-PDEKAEGDNNVVESERIKRRKVEKLENPEEDILYGVERQSSEVLSKQQLCSHPGSFGNMCIVCVQ
        MS+ ++SP H SSSSDD AAFLD  LDS S  SS P E+ E +++V     +KR+K+E LE               E  S +  C HPGSFGNMC VC Q
Subjt:  MSIVTNSPAH-SSSSDDFAAFLDVALDSHSSDSS-PDEKAEGDNNVVESERIKRRKVEKLENPEEDILYGVERQSSEVLSKQQLCSHPGSFGNMCIVCVQ

Query:  RLDEVSGVTFGYIHKQ
        +L+E +GV+F YIHK+
Subjt:  RLDEVSGVTFGYIHKQ

Arabidopsis top hits

e value

%identity

Alignment

AT5G58003.1 C-terminal domain phosphatase-like 4

1.5e-16

48.28

Show/hide

Query:  MSIVTNSPAH-SSSSDDFAAFLDVALDSHSSDSS-PDEKAEGDNNVVESERIKRRKVEKLENPEEDILYGVERQSSEVLSKQQLCSHPGSFGNMCIVCVQ
        MS+ ++SP H SSSSDD AAFLD  LDS S  SS P E+ E +++V     +KR+K+E LE               E  S +  C HPGSFGNMC VC Q
Subjt:  MSIVTNSPAH-SSSSDDFAAFLDVALDSHSSDSS-PDEKAEGDNNVVESERIKRRKVEKLENPEEDILYGVERQSSEVLSKQQLCSHPGSFGNMCIVCVQ

Query:  RLDEVSGVTFGYIHKQ
        +L+E +GV+F YIHK+
Subjt:  RLDEVSGVTFGYIHKQ

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGGCGCGTTTCTGGCAACTCCTTCGCAGACAGCAGCTTTACTTCGCGAGTTCCGGCGGTTTGAGCTGTGGGTCTTCCCCTCTGGCGAGTTTGGACGTTTATTAGGCTC
CACCAGCGAGTGGATGAGCATTGTGACTAATTCTCCGGCTCACTCGTCGAGCAGTGACGATTTTGCTGCATTTCTTGATGTAGCTCTAGATTCCCATTCCTCTGACTCAT
CGCCTGATGAAAAGGCTGAGGGTGACAATAATGTTGTTGAAAGTGAGAGGATAAAACGTCGTAAAGTGGAGAAGCTGGAAAACCCAGAGGAGGACATTCTGTATGGAGTT
GAAAGGCAAAGTTCAGAAGTATTGTCAAAGCAGCAACTATGCAGTCATCCTGGTTCATTTGGGAATATGTGTATCGTCTGTGTGCAGAGGTTGGATGAGGTATCTGGCGT
GACATTTGGGTATATACATAAGCAACCTGCCTATTGGTTAAGGCAAACAAAAGAGGGAAAGCAGTACATAATGGGGAATCACCTAGCCAACGATCGTGCCAGAAATCCGT
CTCTTCTCATCAATTTCTTGAATGGACAGAGTGATACTAAAGCAGAAAACGGTAAAGAAAAAGAAAAGAGGTCGGAATGTTCTTATGTCGAAGTTATGAAGCTAGATGAT
TCTAATCCCCTCCTGACTAGTGGTAGAGCCACTCTCAAGGTGAAAAACGAGCAATACATGAAGTTAGGTCAATCTGTTGGGAAGACACTCTTACTGAAATAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MGAFLATPSQTAALLREFRRFELWVFPSGEFGRLLGSTSEWMSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERIKRRKVEKLENPEEDILYGV
ERQSSEVLSKQQLCSHPGSFGNMCIVCVQRLDEVSGVTFGYIHKQPAYWLRQTKEGKQYIMGNHLANDRARNPSLLINFLNGQSDTKAENGKEKEKRSECSYVEVMKLDD
SNPLLTSGRATLKVKNEQYMKLGQSVGKTLLLK

Spg020952 (gene) of Sponge gourd (cylindrica) v1 genome