CuGenDBv2

Gene ID	Spg020967
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	RNA polymerase II C-terminal domain phosphatase-like
Genome location	scaffold9:3467185..3468666
RNA-Seq Expression	Spg020967
Synteny	Spg020967
Gene Ontology terms	GO:0070940 - dephosphorylation of RNA polymerase II C-terminal domain (biological process) GO:0005634 - nucleus (cellular component) GO:0008420 - RNA polymerase II CTD heptapeptide repeat phosphatase activity (molecular function)
InterPro domains	IPR001357 - BRCT domain IPR036420 - BRCT domain superfamily IPR039189 - CTD phosphatase Fcp1

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6607512.1 RNA polymerase II C-terminal domain phosphatase-like 4, partial [Cucurbita argyrosperma subsp. sororia]

1.3e-46

68.87

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Query:  CYSLSPLGSLERV---GCSKISALLLKSFGLWSNILPLDGVQITFNSFVLKTIRSKVLVGCKVVFSRVFPTKFQAENHHLWKMVEQLGGTCSTELDPSVT
        C SLS L S E       + I  +L +   ++ N L  D V       VLKT+RSKVL GCKVVFSRVFPTKFQA+NHHLWKMVEQLGGTCSTELDPSVT
Subjt:  CYSLSPLGSLERV---GCSKISALLLKSFGLWSNILPLDGVQITFNSFVLKTIRSKVLVGCKVVFSRVFPTKFQAENHHLWKMVEQLGGTCSTELDPSVT

Query:  HVVSTDSGTEKSRWAVKEQKFLVNPQWIEASNYFWKRQAEENFPMEQTKKQ
        H+VSTD+GTEKSRWA+KEQKFLV+PQWIEASNYFWKR+AEE F +E TKKQ
Subjt:  HVVSTDSGTEKSRWAVKEQKFLVNPQWIEASNYFWKRQAEENFPMEQTKKQ

XP_022141754.1 RNA polymerase II C-terminal domain phosphatase-like 4 [Momordica charantia]

3.4e-47

89.32

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Query:  VLKTIRSKVLVGCKVVFSRVFPTKFQAENHHLWKMVEQLGGTCSTELDPSVTHVVSTDSGTEKSRWAVKEQKFLVNPQWIEASNYFWKRQAEENFPMEQT
        VLKT+RSKVL GCKVVF+RVFP KFQA+NHHLWKMVEQLGG+CST+LDPSVTHVVSTD+GTEKSRWAVKEQKFLV+P+WIEASNYFWKRQAEENFP+EQT
Subjt:  VLKTIRSKVLVGCKVVFSRVFPTKFQAENHHLWKMVEQLGGTCSTELDPSVTHVVSTDSGTEKSRWAVKEQKFLVNPQWIEASNYFWKRQAEENFPMEQT

Query:  KKQ
        KKQ
Subjt:  KKQ

XP_022925487.1 RNA polymerase II C-terminal domain phosphatase-like 4 isoform X1 [Cucurbita moschata]

1.0e-46

69.54

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Query:  CYSLSPLGSLERV---GCSKISALLLKSFGLWSNILPLDGVQITFNSFVLKTIRSKVLVGCKVVFSRVFPTKFQAENHHLWKMVEQLGGTCSTELDPSVT
        C SLS L S E       + I  +L +   ++ N L  D V       VLKT+RSKVL GCKVVFSRVFPTKFQAENHHLWKMVEQLGGTCSTELD SVT
Subjt:  CYSLSPLGSLERV---GCSKISALLLKSFGLWSNILPLDGVQITFNSFVLKTIRSKVLVGCKVVFSRVFPTKFQAENHHLWKMVEQLGGTCSTELDPSVT

Query:  HVVSTDSGTEKSRWAVKEQKFLVNPQWIEASNYFWKRQAEENFPMEQTKKQ
        HVVSTD GTEKSRWA+KE+KFLV+P+WIEASNYFWKRQAE+NFP+EQ+KKQ
Subjt:  HVVSTDSGTEKSRWAVKEQKFLVNPQWIEASNYFWKRQAEENFPMEQTKKQ

XP_022925489.1 RNA polymerase II C-terminal domain phosphatase-like 4 isoform X2 [Cucurbita moschata]

1.0e-46

69.54

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Query:  CYSLSPLGSLERV---GCSKISALLLKSFGLWSNILPLDGVQITFNSFVLKTIRSKVLVGCKVVFSRVFPTKFQAENHHLWKMVEQLGGTCSTELDPSVT
        C SLS L S E       + I  +L +   ++ N L  D V       VLKT+RSKVL GCKVVFSRVFPTKFQAENHHLWKMVEQLGGTCSTELD SVT
Subjt:  CYSLSPLGSLERV---GCSKISALLLKSFGLWSNILPLDGVQITFNSFVLKTIRSKVLVGCKVVFSRVFPTKFQAENHHLWKMVEQLGGTCSTELDPSVT

Query:  HVVSTDSGTEKSRWAVKEQKFLVNPQWIEASNYFWKRQAEENFPMEQTKKQ
        HVVSTD GTEKSRWA+KE+KFLV+P+WIEASNYFWKRQAE+NFP+EQ+KKQ
Subjt:  HVVSTDSGTEKSRWAVKEQKFLVNPQWIEASNYFWKRQAEENFPMEQTKKQ

XP_022973448.1 RNA polymerase II C-terminal domain phosphatase-like 4 [Cucurbita maxima]

6.9e-48

70.2

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Query:  CYSLSPLGSLERVGCSKISALL--LKS-FGLWSNILPLDGVQITFNSFVLKTIRSKVLVGCKVVFSRVFPTKFQAENHHLWKMVEQLGGTCSTELDPSVT
        C SLS L S E      ++ +L  LK    ++ N L  D V       VLKT+RSKVL GCKVVFSRVFPTKFQA+NHHLWKMVEQLGGTCSTELDPSVT
Subjt:  CYSLSPLGSLERVGCSKISALL--LKS-FGLWSNILPLDGVQITFNSFVLKTIRSKVLVGCKVVFSRVFPTKFQAENHHLWKMVEQLGGTCSTELDPSVT

Query:  HVVSTDSGTEKSRWAVKEQKFLVNPQWIEASNYFWKRQAEENFPMEQTKKQ
        H+VSTD+GTEKSRWA+KEQKFLV+PQWIEASNYFWKR+AEE FP+E TKKQ
Subjt:  HVVSTDSGTEKSRWAVKEQKFLVNPQWIEASNYFWKRQAEENFPMEQTKKQ

TrEMBL top hits

e value

%identity

Alignment

A0A6J1BV42 RNA polymerase II C-terminal domain phosphatase-like

5.3e-46

87.38

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Query:  VLKTIRSKVLVGCKVVFSRVFPTKFQAENHHLWKMVEQLGGTCSTELDPSVTHVVSTDSGTEKSRWAVKEQKFLVNPQWIEASNYFWKRQAEENFPMEQT
        VLKT+RSKVL GCKVVF+RVFPTKF A+NHHLWKMVEQLGG+CST+LD SVTHVVSTD+GTEKSRWAVKEQKFLV+P+WIEASNYFWKRQ EENFP+EQT
Subjt:  VLKTIRSKVLVGCKVVFSRVFPTKFQAENHHLWKMVEQLGGTCSTELDPSVTHVVSTDSGTEKSRWAVKEQKFLVNPQWIEASNYFWKRQAEENFPMEQT

Query:  KKQ
        KKQ
Subjt:  KKQ

A0A6J1CJQ5 RNA polymerase II C-terminal domain phosphatase-like

1.7e-47

89.32

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Query:  VLKTIRSKVLVGCKVVFSRVFPTKFQAENHHLWKMVEQLGGTCSTELDPSVTHVVSTDSGTEKSRWAVKEQKFLVNPQWIEASNYFWKRQAEENFPMEQT
        VLKT+RSKVL GCKVVF+RVFP KFQA+NHHLWKMVEQLGG+CST+LDPSVTHVVSTD+GTEKSRWAVKEQKFLV+P+WIEASNYFWKRQAEENFP+EQT
Subjt:  VLKTIRSKVLVGCKVVFSRVFPTKFQAENHHLWKMVEQLGGTCSTELDPSVTHVVSTDSGTEKSRWAVKEQKFLVNPQWIEASNYFWKRQAEENFPMEQT

Query:  KKQ
        KKQ
Subjt:  KKQ

A0A6J1ECB6 RNA polymerase II C-terminal domain phosphatase-like

4.8e-47

69.54

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Query:  CYSLSPLGSLERV---GCSKISALLLKSFGLWSNILPLDGVQITFNSFVLKTIRSKVLVGCKVVFSRVFPTKFQAENHHLWKMVEQLGGTCSTELDPSVT
        C SLS L S E       + I  +L +   ++ N L  D V       VLKT+RSKVL GCKVVFSRVFPTKFQAENHHLWKMVEQLGGTCSTELD SVT
Subjt:  CYSLSPLGSLERV---GCSKISALLLKSFGLWSNILPLDGVQITFNSFVLKTIRSKVLVGCKVVFSRVFPTKFQAENHHLWKMVEQLGGTCSTELDPSVT

Query:  HVVSTDSGTEKSRWAVKEQKFLVNPQWIEASNYFWKRQAEENFPMEQTKKQ
        HVVSTD GTEKSRWA+KE+KFLV+P+WIEASNYFWKRQAE+NFP+EQ+KKQ
Subjt:  HVVSTDSGTEKSRWAVKEQKFLVNPQWIEASNYFWKRQAEENFPMEQTKKQ

A0A6J1EFC1 RNA polymerase II C-terminal domain phosphatase-like

4.8e-47

69.54

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Query:  CYSLSPLGSLERV---GCSKISALLLKSFGLWSNILPLDGVQITFNSFVLKTIRSKVLVGCKVVFSRVFPTKFQAENHHLWKMVEQLGGTCSTELDPSVT
        C SLS L S E       + I  +L +   ++ N L  D V       VLKT+RSKVL GCKVVFSRVFPTKFQAENHHLWKMVEQLGGTCSTELD SVT
Subjt:  CYSLSPLGSLERV---GCSKISALLLKSFGLWSNILPLDGVQITFNSFVLKTIRSKVLVGCKVVFSRVFPTKFQAENHHLWKMVEQLGGTCSTELDPSVT

Query:  HVVSTDSGTEKSRWAVKEQKFLVNPQWIEASNYFWKRQAEENFPMEQTKKQ
        HVVSTD GTEKSRWA+KE+KFLV+P+WIEASNYFWKRQAE+NFP+EQ+KKQ
Subjt:  HVVSTDSGTEKSRWAVKEQKFLVNPQWIEASNYFWKRQAEENFPMEQTKKQ

A0A6J1ID30 RNA polymerase II C-terminal domain phosphatase-like

3.3e-48

70.2

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Query:  CYSLSPLGSLERVGCSKISALL--LKS-FGLWSNILPLDGVQITFNSFVLKTIRSKVLVGCKVVFSRVFPTKFQAENHHLWKMVEQLGGTCSTELDPSVT
        C SLS L S E      ++ +L  LK    ++ N L  D V       VLKT+RSKVL GCKVVFSRVFPTKFQA+NHHLWKMVEQLGGTCSTELDPSVT
Subjt:  CYSLSPLGSLERVGCSKISALL--LKS-FGLWSNILPLDGVQITFNSFVLKTIRSKVLVGCKVVFSRVFPTKFQAENHHLWKMVEQLGGTCSTELDPSVT

Query:  HVVSTDSGTEKSRWAVKEQKFLVNPQWIEASNYFWKRQAEENFPMEQTKKQ
        H+VSTD+GTEKSRWA+KEQKFLV+PQWIEASNYFWKR+AEE FP+E TKKQ
Subjt:  HVVSTDSGTEKSRWAVKEQKFLVNPQWIEASNYFWKRQAEENFPMEQTKKQ

SwissProt top hits

e value

%identity

Alignment

Q00IB6 RNA polymerase II C-terminal domain phosphatase-like 4

7.7e-34

62.14

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Query:  VLKTIRSKVLVGCKVVFSRVFPTKFQAENHHLWKMVEQLGGTCSTELDPSVTHVVSTDSGTEKSRWAVKEQKFLVNPQWIEASNYFWKRQAEENFPMEQT
        +LK +R ++L GCK+VFSRVFPTK + E+H LWKM E+LG TC+TE+D SVTHVV+ D GTEK+RWAV+E+K++V+  WI+A+NY W +Q EENF +EQ 
Subjt:  VLKTIRSKVLVGCKVVFSRVFPTKFQAENHHLWKMVEQLGGTCSTELDPSVTHVVSTDSGTEKSRWAVKEQKFLVNPQWIEASNYFWKRQAEENFPMEQT

Query:  KKQ
        KKQ
Subjt:  KKQ

Q8LL04 RNA polymerase II C-terminal domain phosphatase-like 3

6.6e-17

42.11

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Query:  VLKTIRSKVLVGCKVVFSRVFPT-KFQAENHHLWKMVEQLGGTCSTELDPSVTHVVSTDSGTEKSRWAVKEQKFLVNPQWIEASNYFWKRQAEEN
        +L + + K+L GC++VFSR+ P  + +   H LW+  EQ G  C+T++D  VTHVV+   GT+K  WA+   +F+V+P W+EAS + ++R A EN
Subjt:  VLKTIRSKVLVGCKVVFSRVFPT-KFQAENHHLWKMVEQLGGTCSTELDPSVTHVVSTDSGTEKSRWAVKEQKFLVNPQWIEASNYFWKRQAEEN

Arabidopsis top hits

e value

%identity

Alignment

AT2G33540.1 C-terminal domain phosphatase-like 3

4.7e-18

42.11

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Query:  VLKTIRSKVLVGCKVVFSRVFPT-KFQAENHHLWKMVEQLGGTCSTELDPSVTHVVSTDSGTEKSRWAVKEQKFLVNPQWIEASNYFWKRQAEEN
        +L + + K+L GC++VFSR+ P  + +   H LW+  EQ G  C+T++D  VTHVV+   GT+K  WA+   +F+V+P W+EAS + ++R A EN
Subjt:  VLKTIRSKVLVGCKVVFSRVFPT-KFQAENHHLWKMVEQLGGTCSTELDPSVTHVVSTDSGTEKSRWAVKEQKFLVNPQWIEASNYFWKRQAEEN

AT5G58003.1 C-terminal domain phosphatase-like 4

5.5e-35

62.14

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Query:  VLKTIRSKVLVGCKVVFSRVFPTKFQAENHHLWKMVEQLGGTCSTELDPSVTHVVSTDSGTEKSRWAVKEQKFLVNPQWIEASNYFWKRQAEENFPMEQT
        +LK +R ++L GCK+VFSRVFPTK + E+H LWKM E+LG TC+TE+D SVTHVV+ D GTEK+RWAV+E+K++V+  WI+A+NY W +Q EENF +EQ 
Subjt:  VLKTIRSKVLVGCKVVFSRVFPTKFQAENHHLWKMVEQLGGTCSTELDPSVTHVVSTDSGTEKSRWAVKEQKFLVNPQWIEASNYFWKRQAEENFPMEQT

Query:  KKQ
        KKQ
Subjt:  KKQ

Sequences

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CDS sequence

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ATGTGCTACTCACTCTCTCCTTTGGGGTCTTTAGAAAGAGTAGGGTGTTCGAAGATAAGTGCTCTTCTTTTGAAATCTTTTGGCCTATGGTCCAACATATTGCCTCTTGA
TGGTGTACAAATCACGTTTAATTCTTTTGTATTAAAGACAATTCGGAGCAAAGTTCTGGTGGGATGCAAGGTGGTCTTCAGTCGAGTCTTTCCTACCAAATTTCAGGCTG
AAAACCATCATCTCTGGAAGATGGTCGAGCAGTTGGGAGGCACTTGCTCAACCGAACTCGACCCATCTGTGACACACGTGGTCTCAACGGATTCTGGAACGGAGAAGTCT
CGTTGGGCAGTGAAAGAGCAGAAGTTTCTGGTCAATCCACAGTGGATAGAAGCATCAAACTACTTCTGGAAACGGCAAGCGGAAGAGAACTTCCCTATGGAGCAAACCAA
GAAACAATGA

mRNA sequence

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Protein sequence

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MCYSLSPLGSLERVGCSKISALLLKSFGLWSNILPLDGVQITFNSFVLKTIRSKVLVGCKVVFSRVFPTKFQAENHHLWKMVEQLGGTCSTELDPSVTHVVSTDSGTEKS
RWAVKEQKFLVNPQWIEASNYFWKRQAEENFPMEQTKKQ

Spg020967 (gene) of Sponge gourd (cylindrica) v1 genome