; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg020978 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg020978
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Genome locationscaffold9:1048400..1058917
RNA-Seq ExpressionSpg020978
SyntenySpg020978
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040811.1 retrotransposon gag protein [Cucumis melo var. makuwa]8.1e-3452.27Show/hide
Query:  RSKEFSQPRQPVTAKELFSKTF---HKKEKESFATSYCIDV----------EEVDNSKKGEQKTSVFDRIRPLTTCPSVFQRMSMATKKEEIQCSASTFT
        + ++F QPRQ +T  E F ++F   H KE       +   +          EEVDNS + +Q+TSVFDRI+PLTT  SVFQR+S+ TK+EE QC  ST T
Subjt:  RSKEFSQPRQPVTAKELFSKTF---HKKEKESFATSYCIDV----------EEVDNSKKGEQKTSVFDRIRPLTTCPSVFQRMSMATKKEEIQCSASTFT

Query:  RPSAFQRLSVSTLRKSRSSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNSDEKLHSSILSRMKRKFSVLINTEGSL
        R SAF+ LS+ST +K R STS FDRLK+ NDQ +R+M +L++K F E N D+K+HS + SRMKRK SV INTEGSL
Subjt:  RPSAFQRLSVSTLRKSRSSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNSDEKLHSSILSRMKRKFSVLINTEGSL

KAA0050736.1 retrotransposon gag protein [Cucumis melo var. makuwa]6.2e-3451.41Show/hide
Query:  QRSKEFSQPRQPVTAKELFSKTFHKKEKESFA------TSYCIDV-------EEVDNSKKGEQKTSVFDRIRPLTTCPSVFQRMSMATKKEEIQCSASTF
        ++ ++F QPR+ +T  E F ++F +   E         T+  ++V       EEVDNS + +Q+TSVFDRI+PLTT  SVFQR+SMATK+EE QC  ST+
Subjt:  QRSKEFSQPRQPVTAKELFSKTFHKKEKESFA------TSYCIDV-------EEVDNSKKGEQKTSVFDRIRPLTTCPSVFQRMSMATKKEEIQCSASTF

Query:  TRPSAFQRLSVSTLRKSRSSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNSDEKLHSSILSRMKRKFSVLINTEGSL
        TR SAF+RLS+S  +K R STS FDRLK+TNDQ +R+M +L+ K F E N D+K++S + SR+KRK S+ INTEGSL
Subjt:  TRPSAFQRLSVSTLRKSRSSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNSDEKLHSSILSRMKRKFSVLINTEGSL

KAA0052018.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.8e-3452.27Show/hide
Query:  RSKEFSQPRQPVTAKELFSKTFHKKEKESFA------TSYCIDV-------EEVDNSKKGEQKTSVFDRIRPLTTCPSVFQRMSMATKKEEIQCSASTFT
        + ++F QPRQ +T  E   ++F +   E         T+  ++V       EE+DNS + +Q+TSVFDRI+PLTT  SVFQR+SMATKKEE QC  ST+ 
Subjt:  RSKEFSQPRQPVTAKELFSKTFHKKEKESFA------TSYCIDV-------EEVDNSKKGEQKTSVFDRIRPLTTCPSVFQRMSMATKKEEIQCSASTFT

Query:  RPSAFQRLSVSTLRKSRSSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNSDEKLHSSILSRMKRKFSVLINTEGSL
        R SAF+RLS+ST +K R STS FDRLK+TNDQ +R+M  L+ K F E N D+K+HS + S MKRK SV INT+GSL
Subjt:  RPSAFQRLSVSTLRKSRSSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNSDEKLHSSILSRMKRKFSVLINTEGSL

KAA0055462.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.1e-3452.27Show/hide
Query:  RSKEFSQPRQPVTAKELFSKTFHKKEKESFA------TSYCIDV-------EEVDNSKKGEQKTSVFDRIRPLTTCPSVFQRMSMATKKEEIQCSASTFT
        + ++F QPR+ +T  E  S++F +   E         T+  ++V       EEVDNS + +Q+TSVFDRI+PLTT  SVFQR+SMATK+E+ QC  ST+ 
Subjt:  RSKEFSQPRQPVTAKELFSKTFHKKEKESFA------TSYCIDV-------EEVDNSKKGEQKTSVFDRIRPLTTCPSVFQRMSMATKKEEIQCSASTFT

Query:  RPSAFQRLSVSTLRKSRSSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNSDEKLHSSILSRMKRKFSVLINTEGSL
        R SAF+RLS+ST +K R STS FDRLK+TNDQ +R+M +L+ K F E N D+K+H+ + SRMKRK SV INTEGSL
Subjt:  RPSAFQRLSVSTLRKSRSSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNSDEKLHSSILSRMKRKFSVLINTEGSL

TYK18884.1 gag protease polyprotein [Cucumis melo var. makuwa]4.8e-3451.14Show/hide
Query:  RSKEFSQPRQPVTAKELFSKTFHKKEKESFA------TSYCIDV-------EEVDNSKKGEQKTSVFDRIRPLTTCPSVFQRMSMATKKEEIQCSASTFT
        + K+F QPR+ +T  +   ++F +   E         T+  ++V       EE+DNS + +QKTS+FDRI+PLTT  SVFQR+SMATK+EE QC  ST+ 
Subjt:  RSKEFSQPRQPVTAKELFSKTFHKKEKESFA------TSYCIDV-------EEVDNSKKGEQKTSVFDRIRPLTTCPSVFQRMSMATKKEEIQCSASTFT

Query:  RPSAFQRLSVSTLRKSRSSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNSDEKLHSSILSRMKRKFSVLINTEGSL
        R SAF+RLS+ST +K R STS FDRLK+TNDQ +R+M +L+ K F E N D+K+HS + SRMKRK S+ INT+GSL
Subjt:  RPSAFQRLSVSTLRKSRSSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNSDEKLHSSILSRMKRKFSVLINTEGSL

TrEMBL top hitse value%identityAlignment
A0A5A7U974 Retrotransposon gag protein3.0e-3451.41Show/hide
Query:  QRSKEFSQPRQPVTAKELFSKTFHKKEKESFA------TSYCIDV-------EEVDNSKKGEQKTSVFDRIRPLTTCPSVFQRMSMATKKEEIQCSASTF
        ++ ++F QPR+ +T  E F ++F +   E         T+  ++V       EEVDNS + +Q+TSVFDRI+PLTT  SVFQR+SMATK+EE QC  ST+
Subjt:  QRSKEFSQPRQPVTAKELFSKTFHKKEKESFA------TSYCIDV-------EEVDNSKKGEQKTSVFDRIRPLTTCPSVFQRMSMATKKEEIQCSASTF

Query:  TRPSAFQRLSVSTLRKSRSSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNSDEKLHSSILSRMKRKFSVLINTEGSL
        TR SAF+RLS+S  +K R STS FDRLK+TNDQ +R+M +L+ K F E N D+K++S + SR+KRK S+ INTEGSL
Subjt:  TRPSAFQRLSVSTLRKSRSSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNSDEKLHSSILSRMKRKFSVLINTEGSL

A0A5A7U9V3 Retrotransposon gag protein2.3e-3452.27Show/hide
Query:  RSKEFSQPRQPVTAKELFSKTFHKKEKESFA------TSYCIDV-------EEVDNSKKGEQKTSVFDRIRPLTTCPSVFQRMSMATKKEEIQCSASTFT
        + ++F QPRQ +T  E   ++F +   E         T+  ++V       EE+DNS + +Q+TSVFDRI+PLTT  SVFQR+SMATKKEE QC  ST+ 
Subjt:  RSKEFSQPRQPVTAKELFSKTFHKKEKESFA------TSYCIDV-------EEVDNSKKGEQKTSVFDRIRPLTTCPSVFQRMSMATKKEEIQCSASTFT

Query:  RPSAFQRLSVSTLRKSRSSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNSDEKLHSSILSRMKRKFSVLINTEGSL
        R SAF+RLS+ST +K R STS FDRLK+TNDQ +R+M  L+ K F E N D+K+HS + S MKRK SV INT+GSL
Subjt:  RPSAFQRLSVSTLRKSRSSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNSDEKLHSSILSRMKRKFSVLINTEGSL

A0A5A7UI09 Retrotransposon gag protein1.0e-3452.27Show/hide
Query:  RSKEFSQPRQPVTAKELFSKTFHKKEKESFA------TSYCIDV-------EEVDNSKKGEQKTSVFDRIRPLTTCPSVFQRMSMATKKEEIQCSASTFT
        + ++F QPR+ +T  E  S++F +   E         T+  ++V       EEVDNS + +Q+TSVFDRI+PLTT  SVFQR+SMATK+E+ QC  ST+ 
Subjt:  RSKEFSQPRQPVTAKELFSKTFHKKEKESFA------TSYCIDV-------EEVDNSKKGEQKTSVFDRIRPLTTCPSVFQRMSMATKKEEIQCSASTFT

Query:  RPSAFQRLSVSTLRKSRSSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNSDEKLHSSILSRMKRKFSVLINTEGSL
        R SAF+RLS+ST +K R STS FDRLK+TNDQ +R+M +L+ K F E N D+K+H+ + SRMKRK SV INTEGSL
Subjt:  RPSAFQRLSVSTLRKSRSSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNSDEKLHSSILSRMKRKFSVLINTEGSL

A0A5D3BBF9 Gag protease polyprotein3.9e-3451.7Show/hide
Query:  RSKEFSQPRQPVTAKELFSKTFHKKEKESFA------TSYCIDV-------EEVDNSKKGEQKTSVFDRIRPLTTCPSVFQRMSMATKKEEIQCSASTFT
        + ++F QPR+ +T  E   ++F +   E         T+  ++V       EEVDNS + +Q+TS+FDRI+PLTT   VFQR+SMATK+EE QC  ST+ 
Subjt:  RSKEFSQPRQPVTAKELFSKTFHKKEKESFA------TSYCIDV-------EEVDNSKKGEQKTSVFDRIRPLTTCPSVFQRMSMATKKEEIQCSASTFT

Query:  RPSAFQRLSVSTLRKSRSSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNSDEKLHSSILSRMKRKFSVLINTEGSL
        R SAF+RLS+ST +K R STS FDRLK+TNDQ +R+M +L+ K F E N D+K+HS + SRMKRK SV INTEGSL
Subjt:  RPSAFQRLSVSTLRKSRSSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNSDEKLHSSILSRMKRKFSVLINTEGSL

A0A5D3D5Q0 Gag protease polyprotein2.3e-3451.14Show/hide
Query:  RSKEFSQPRQPVTAKELFSKTFHKKEKESFA------TSYCIDV-------EEVDNSKKGEQKTSVFDRIRPLTTCPSVFQRMSMATKKEEIQCSASTFT
        + K+F QPR+ +T  +   ++F +   E         T+  ++V       EE+DNS + +QKTS+FDRI+PLTT  SVFQR+SMATK+EE QC  ST+ 
Subjt:  RSKEFSQPRQPVTAKELFSKTFHKKEKESFA------TSYCIDV-------EEVDNSKKGEQKTSVFDRIRPLTTCPSVFQRMSMATKKEEIQCSASTFT

Query:  RPSAFQRLSVSTLRKSRSSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNSDEKLHSSILSRMKRKFSVLINTEGSL
        R SAF+RLS+ST +K R STS FDRLK+TNDQ +R+M +L+ K F E N D+K+HS + SRMKRK S+ INT+GSL
Subjt:  RPSAFQRLSVSTLRKSRSSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNSDEKLHSSILSRMKRKFSVLINTEGSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGACCTTGATAATGGTAGTTAGTTGTAATAGTCTAAGGCAGAATGCCCAGTGCGCTGATAGATCTGACAAGGGGGCATATACTAATGACAAGTTTCTTGTTAAGTA
TAACCCTTTGTCTGAACCTGATTCTGACCTAGTGACTGTCATGATGACTGAGACAAGAACTATGGAAGAAAGAATGGCTGAGATGCAGGAACACATCAACACCTTGATGA
AGGCGATTGAAGAAAAAGATTCTCAAATCGCGCAACTAAAGAGCCAGATTGAGAACCAACATATCGTCGAATCAAGTCAAACCCAAAGAAGTAAAGAGTTTTCTCAACCT
CGACAACCGGTGACTGCGAAGGAACTCTTCTCCAAAACTTTCCACAAAAAGGAAAAAGAAAGCTTTGCAACTTCCTACTGCATCGACGTAGAAGAAGTTGACAATTCCAA
GAAGGGTGAACAAAAGACTTCCGTCTTCGATCGCATCAGGCCTTTAACTACTTGTCCTTCGGTGTTCCAAAGAATGAGTATGGCCACGAAAAAAGAAGAAATTCAATGTT
CGGCGTCCACCTTCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATTGAGGAAAAGTCGGTCTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAAACGAT
CAACCTAAAAGAAAGATGGACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGCGACGAGAAGCTTCATAGTAGCATCCTGTCACGTATGAAGAGGAAGTTTTCTGT
TCTCATAAATACGGAAGGTTCCTTGAAGTTTGAAGGTTCTTACGCTGCACTGCTTCCTTCACCAAGTTTGAAGGTTATCACGCTGCGCTGCTTCGCTGTTCCTTCTCCAA
GTTCGAAGGTTCCCACATTGCGCTGTTGTGCTGCTTCCTTCTCCAAGTTCGAAGGATCCTCCAAGTCGAAGGTTCTCAGGTTCTCATCCGCTTCGCTGGAGTTCTTTCTC
CCCAAGTTTGAAACTTCTCATGCTCCAAGTCGAAGGTTCTCAGGTTCTCATCCGCTTCGCTGGAGTTCTTTCTCCCCAAGTTTGAAACTTCTCATGCGCTCGTGTTCTCA
CGTTGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAGAAGGTTCTCATCAGTTCGAAGGTTTCAAGTTGCTTCGCTGCAGTTTCCTTCCTCCAAGTCGAAGGTTCTCAGGT
TCTCATCCGCTTCGCTGGAGTTCTTTCTCCCCAAGTTTGAAACTTCTCATGCGCTCGTGTTCTCATGTGCTTCGTTGCAGTTCGAAGGTTTCAAGTTGCTTCGCTGCAGT
TTCCTTCCTCCAAGTTCGAAGGCAAATCTGGTGACCACCTCTGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCACTGCAAGTGAAGTTGAT
GACGACCGTGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCACTGCAAGTGAAGTTGATGACGACCGTGGTGACCACCC
CTGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCACTGCAAGTGAAGTTGATGACGACCGTGGTGACCACCCCTGCAGGAAACTACAGTCAT
CAAAGTGACTGGTCTAGACAGGTGGTGAAATCACTGCAAGAGAAGTTGATGACGACCGTGGTGACCACCCCTGTAGGAAACTACAGTCATCAAAGTGACTGGGAGAACTC
ATCTGACCTTCATGTGACAACAACTGTAAATTTGTTTGAAGGGGGAAGAGGTAGCCTCCAAGACAAGAAAAAACTCCACCCTGGTGTGCCTGATGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGACGACCTTGATAATGGTAGTTAGTTGTAATAGTCTAAGGCAGAATGCCCAGTGCGCTGATAGATCTGACAAGGGGGCATATACTAATGACAAGTTTCTTGTTAAGTA
TAACCCTTTGTCTGAACCTGATTCTGACCTAGTGACTGTCATGATGACTGAGACAAGAACTATGGAAGAAAGAATGGCTGAGATGCAGGAACACATCAACACCTTGATGA
AGGCGATTGAAGAAAAAGATTCTCAAATCGCGCAACTAAAGAGCCAGATTGAGAACCAACATATCGTCGAATCAAGTCAAACCCAAAGAAGTAAAGAGTTTTCTCAACCT
CGACAACCGGTGACTGCGAAGGAACTCTTCTCCAAAACTTTCCACAAAAAGGAAAAAGAAAGCTTTGCAACTTCCTACTGCATCGACGTAGAAGAAGTTGACAATTCCAA
GAAGGGTGAACAAAAGACTTCCGTCTTCGATCGCATCAGGCCTTTAACTACTTGTCCTTCGGTGTTCCAAAGAATGAGTATGGCCACGAAAAAAGAAGAAATTCAATGTT
CGGCGTCCACCTTCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATTGAGGAAAAGTCGGTCTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAAACGAT
CAACCTAAAAGAAAGATGGACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGCGACGAGAAGCTTCATAGTAGCATCCTGTCACGTATGAAGAGGAAGTTTTCTGT
TCTCATAAATACGGAAGGTTCCTTGAAGTTTGAAGGTTCTTACGCTGCACTGCTTCCTTCACCAAGTTTGAAGGTTATCACGCTGCGCTGCTTCGCTGTTCCTTCTCCAA
GTTCGAAGGTTCCCACATTGCGCTGTTGTGCTGCTTCCTTCTCCAAGTTCGAAGGATCCTCCAAGTCGAAGGTTCTCAGGTTCTCATCCGCTTCGCTGGAGTTCTTTCTC
CCCAAGTTTGAAACTTCTCATGCTCCAAGTCGAAGGTTCTCAGGTTCTCATCCGCTTCGCTGGAGTTCTTTCTCCCCAAGTTTGAAACTTCTCATGCGCTCGTGTTCTCA
CGTTGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAGAAGGTTCTCATCAGTTCGAAGGTTTCAAGTTGCTTCGCTGCAGTTTCCTTCCTCCAAGTCGAAGGTTCTCAGGT
TCTCATCCGCTTCGCTGGAGTTCTTTCTCCCCAAGTTTGAAACTTCTCATGCGCTCGTGTTCTCATGTGCTTCGTTGCAGTTCGAAGGTTTCAAGTTGCTTCGCTGCAGT
TTCCTTCCTCCAAGTTCGAAGGCAAATCTGGTGACCACCTCTGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCACTGCAAGTGAAGTTGAT
GACGACCGTGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCACTGCAAGTGAAGTTGATGACGACCGTGGTGACCACCC
CTGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCACTGCAAGTGAAGTTGATGACGACCGTGGTGACCACCCCTGCAGGAAACTACAGTCAT
CAAAGTGACTGGTCTAGACAGGTGGTGAAATCACTGCAAGAGAAGTTGATGACGACCGTGGTGACCACCCCTGTAGGAAACTACAGTCATCAAAGTGACTGGGAGAACTC
ATCTGACCTTCATGTGACAACAACTGTAAATTTGTTTGAAGGGGGAAGAGGTAGCCTCCAAGACAAGAAAAAACTCCACCCTGGTGTGCCTGATGCTTAA
Protein sequenceShow/hide protein sequence
MTTLIMVVSCNSLRQNAQCADRSDKGAYTNDKFLVKYNPLSEPDSDLVTVMMTETRTMEERMAEMQEHINTLMKAIEEKDSQIAQLKSQIENQHIVESSQTQRSKEFSQP
RQPVTAKELFSKTFHKKEKESFATSYCIDVEEVDNSKKGEQKTSVFDRIRPLTTCPSVFQRMSMATKKEEIQCSASTFTRPSAFQRLSVSTLRKSRSSTSVFDRLKVTND
QPKRKMDNLELKLFDEVNSDEKLHSSILSRMKRKFSVLINTEGSLKFEGSYAALLPSPSLKVITLRCFAVPSPSSKVPTLRCCAASFSKFEGSSKSKVLRFSSASLEFFL
PKFETSHAPSRRFSGSHPLRWSSFSPSLKLLMRSCSHVASLQFLPPSSRRFSSVRRFQVASLQFPSSKSKVLRFSSASLEFFLPKFETSHALVFSCASLQFEGFKLLRCS
FLPPSSKANLVTTSAGNYSHQSDWSRQVVKSLQVKLMTTVVTTPAGNYSHQSDWSRQVVKSLQVKLMTTVVTTPAGNYSHQSDWSRQVVKSLQVKLMTTVVTTPAGNYSH
QSDWSRQVVKSLQEKLMTTVVTTPVGNYSHQSDWENSSDLHVTTTVNLFEGGRGSLQDKKKLHPGVPDA