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Spg020997 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg020997
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionWD repeat-containing protein 43
Genome locationscaffold9:453587..457058
RNA-Seq ExpressionSpg020997
SyntenySpg020997
Gene Ontology termsGO:0005730 - nucleolus (cellular component)
InterPro domainsIPR011047 - Quinoprotein alcohol dehydrogenase-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593430.1 WD repeat-containing protein 43, partial [Cucurbita argyrosperma subsp. sororia]3.8e-4066.17Show/hide
Query:  MKKEILKSPPITTFTPDGDFLSILSSNGTVKASSFSLYRLYVCSFSHADFCLNIQLLDKLWIWSTSDGSLLAEWKDPEGKTDIGYSCMACCFVGKKRKNS
        MK E  KSPPIT FTP+GD+L+ILSSNGTVK                              IW+TSDGSLLAEWKDP+GKTD GYSC+ACCFVGKKRKNS
Subjt:  MKKEILKSPPITTFTPDGDFLSILSSNGTVKASSFSLYRLYVCSFSHADFCLNIQLLDKLWIWSTSDGSLLAEWKDPEGKTDIGYSCMACCFVGKKRKNS

Query:  SCVIAMGTNNGDVLAVNASSGETKWVSAGCHLG
        SC+IA+GTN GDVL VNASSGETKWVSAGCHLG
Subjt:  SCVIAMGTNNGDVLAVNASSGETKWVSAGCHLG

XP_022964606.1 WD repeat-containing protein 43 isoform X1 [Cucurbita moschata]3.8e-4066.17Show/hide
Query:  MKKEILKSPPITTFTPDGDFLSILSSNGTVKASSFSLYRLYVCSFSHADFCLNIQLLDKLWIWSTSDGSLLAEWKDPEGKTDIGYSCMACCFVGKKRKNS
        MK E  KSPPIT FTP+GD+L+ILSSNGTVK                              IW+TSDGSLLAEWKDP+GKTD GYSC+ACCFVGKKRKNS
Subjt:  MKKEILKSPPITTFTPDGDFLSILSSNGTVKASSFSLYRLYVCSFSHADFCLNIQLLDKLWIWSTSDGSLLAEWKDPEGKTDIGYSCMACCFVGKKRKNS

Query:  SCVIAMGTNNGDVLAVNASSGETKWVSAGCHLG
        SC+IA+GTN GDVL VNASSGETKWVSAGCHLG
Subjt:  SCVIAMGTNNGDVLAVNASSGETKWVSAGCHLG

XP_022964607.1 WD repeat-containing protein 43 isoform X2 [Cucurbita moschata]3.8e-4066.17Show/hide
Query:  MKKEILKSPPITTFTPDGDFLSILSSNGTVKASSFSLYRLYVCSFSHADFCLNIQLLDKLWIWSTSDGSLLAEWKDPEGKTDIGYSCMACCFVGKKRKNS
        MK E  KSPPIT FTP+GD+L+ILSSNGTVK                              IW+TSDGSLLAEWKDP+GKTD GYSC+ACCFVGKKRKNS
Subjt:  MKKEILKSPPITTFTPDGDFLSILSSNGTVKASSFSLYRLYVCSFSHADFCLNIQLLDKLWIWSTSDGSLLAEWKDPEGKTDIGYSCMACCFVGKKRKNS

Query:  SCVIAMGTNNGDVLAVNASSGETKWVSAGCHLG
        SC+IA+GTN GDVL VNASSGETKWVSAGCHLG
Subjt:  SCVIAMGTNNGDVLAVNASSGETKWVSAGCHLG

XP_023513462.1 WD repeat-containing protein 43 [Cucurbita pepo subsp. pepo]3.8e-4065.41Show/hide
Query:  MKKEILKSPPITTFTPDGDFLSILSSNGTVKASSFSLYRLYVCSFSHADFCLNIQLLDKLWIWSTSDGSLLAEWKDPEGKTDIGYSCMACCFVGKKRKNS
        MK E+ KSPPIT FTP+GD+L+ILSSNGTVK                              IW+TSDGSLLAEWKDP+G+TD GYSC+ACCFVGKKRKNS
Subjt:  MKKEILKSPPITTFTPDGDFLSILSSNGTVKASSFSLYRLYVCSFSHADFCLNIQLLDKLWIWSTSDGSLLAEWKDPEGKTDIGYSCMACCFVGKKRKNS

Query:  SCVIAMGTNNGDVLAVNASSGETKWVSAGCHLG
        SC+IA+GTN GDVLAVNASSGE KWVSAGCHLG
Subjt:  SCVIAMGTNNGDVLAVNASSGETKWVSAGCHLG

XP_038899613.1 WD repeat-containing protein 43 [Benincasa hispida]3.4e-4166.17Show/hide
Query:  MKKEILKSPPITTFTPDGDFLSILSSNGTVKASSFSLYRLYVCSFSHADFCLNIQLLDKLWIWSTSDGSLLAEWKDPEGKTDIGYSCMACCFVGKKRKNS
        MKKEILKSPPIT FTPDGD+L+ILSSNGT+K                              IWST DGSLLAEWKDP+GK D+GYSCMACCF GKKRKNS
Subjt:  MKKEILKSPPITTFTPDGDFLSILSSNGTVKASSFSLYRLYVCSFSHADFCLNIQLLDKLWIWSTSDGSLLAEWKDPEGKTDIGYSCMACCFVGKKRKNS

Query:  SCVIAMGTNNGDVLAVNASSGETKWVSAGCHLG
         CV+A+GTN+GDVLAVNAS+GE KWVSAGCHLG
Subjt:  SCVIAMGTNNGDVLAVNASSGETKWVSAGCHLG

TrEMBL top hitse value%identityAlignment
A0A1S3CDX9 WD repeat-containing protein 431.9e-3761.65Show/hide
Query:  MKKEILKSPPITTFTPDGDFLSILSSNGTVKASSFSLYRLYVCSFSHADFCLNIQLLDKLWIWSTSDGSLLAEWKDPEGKTDIGYSCMACCFVGKKRKNS
        MKKEILKSPPIT FTPDGD+L+I SSNGT+K                              IWST DGSLLAEWKD +GK D GYSCMACC +GKKRK+S
Subjt:  MKKEILKSPPITTFTPDGDFLSILSSNGTVKASSFSLYRLYVCSFSHADFCLNIQLLDKLWIWSTSDGSLLAEWKDPEGKTDIGYSCMACCFVGKKRKNS

Query:  SCVIAMGTNNGDVLAVNASSGETKWVSAGCHLG
         C++A+GTNNGDVLAVNAS+GE KWVS GCH G
Subjt:  SCVIAMGTNNGDVLAVNASSGETKWVSAGCHLG

A0A6J1D938 WD repeat-containing protein 436.5e-3863.7Show/hide
Query:  MKKEILKSPPITTFTPDGDFLSILSSNGTVKASSFSLYRLYVCSFSHADFCLNIQLLDKLWIWSTSDGSLLAEWKDPEGKTDIGYSCMACCFVGKK--RK
        MKKE+LKSPPIT FTPDGD+L+ILS N TVK                              IWS  DGSLLAEWKD EGKTD+GYSC+ACCFV KK  +K
Subjt:  MKKEILKSPPITTFTPDGDFLSILSSNGTVKASSFSLYRLYVCSFSHADFCLNIQLLDKLWIWSTSDGSLLAEWKDPEGKTDIGYSCMACCFVGKK--RK

Query:  NSSCVIAMGTNNGDVLAVNASSGETKWVSAGCHLG
         SSCVIA+GT+NGDVLAVNASSGETKWVSAGCH+G
Subjt:  NSSCVIAMGTNNGDVLAVNASSGETKWVSAGCHLG

A0A6J1HI85 WD repeat-containing protein 43 isoform X21.8e-4066.17Show/hide
Query:  MKKEILKSPPITTFTPDGDFLSILSSNGTVKASSFSLYRLYVCSFSHADFCLNIQLLDKLWIWSTSDGSLLAEWKDPEGKTDIGYSCMACCFVGKKRKNS
        MK E  KSPPIT FTP+GD+L+ILSSNGTVK                              IW+TSDGSLLAEWKDP+GKTD GYSC+ACCFVGKKRKNS
Subjt:  MKKEILKSPPITTFTPDGDFLSILSSNGTVKASSFSLYRLYVCSFSHADFCLNIQLLDKLWIWSTSDGSLLAEWKDPEGKTDIGYSCMACCFVGKKRKNS

Query:  SCVIAMGTNNGDVLAVNASSGETKWVSAGCHLG
        SC+IA+GTN GDVL VNASSGETKWVSAGCHLG
Subjt:  SCVIAMGTNNGDVLAVNASSGETKWVSAGCHLG

A0A6J1HJF3 WD repeat-containing protein 43 isoform X11.8e-4066.17Show/hide
Query:  MKKEILKSPPITTFTPDGDFLSILSSNGTVKASSFSLYRLYVCSFSHADFCLNIQLLDKLWIWSTSDGSLLAEWKDPEGKTDIGYSCMACCFVGKKRKNS
        MK E  KSPPIT FTP+GD+L+ILSSNGTVK                              IW+TSDGSLLAEWKDP+GKTD GYSC+ACCFVGKKRKNS
Subjt:  MKKEILKSPPITTFTPDGDFLSILSSNGTVKASSFSLYRLYVCSFSHADFCLNIQLLDKLWIWSTSDGSLLAEWKDPEGKTDIGYSCMACCFVGKKRKNS

Query:  SCVIAMGTNNGDVLAVNASSGETKWVSAGCHLG
        SC+IA+GTN GDVL VNASSGETKWVSAGCHLG
Subjt:  SCVIAMGTNNGDVLAVNASSGETKWVSAGCHLG

A0A6J1KMD0 WD repeat-containing protein 431.8e-4066.17Show/hide
Query:  MKKEILKSPPITTFTPDGDFLSILSSNGTVKASSFSLYRLYVCSFSHADFCLNIQLLDKLWIWSTSDGSLLAEWKDPEGKTDIGYSCMACCFVGKKRKNS
        MK E+ KSPPIT FT +GD+L+ILSSNGTVK                              IW TSDGSLLAEWKDP+GKTD GYSC+ACCFVGKKRKNS
Subjt:  MKKEILKSPPITTFTPDGDFLSILSSNGTVKASSFSLYRLYVCSFSHADFCLNIQLLDKLWIWSTSDGSLLAEWKDPEGKTDIGYSCMACCFVGKKRKNS

Query:  SCVIAMGTNNGDVLAVNASSGETKWVSAGCHLG
        SC+IA+GTN GDVLAVNASSGETKWVSAGCHLG
Subjt:  SCVIAMGTNNGDVLAVNASSGETKWVSAGCHLG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G11240.1 transducin family protein / WD-40 repeat family protein3.4e-0726.09Show/hide
Query:  ITTFTPDGDFLSILSSNGTVKASSFSLYRLYVCSFSHADFCLNIQLLDKLWIWSTSDGSLLAEWKD-------------PEGKTDIGYSCMACCFV--GK
        +T+F+P  D+L++ + +G +K                              IW T  G +  E+ D              +G   + Y+CM    +   K
Subjt:  ITTFTPDGDFLSILSSNGTVKASSFSLYRLYVCSFSHADFCLNIQLLDKLWIWSTSDGSLLAEWKD-------------PEGKTDIGYSCMACCFV--GK

Query:  KRKNSSCVIAMGTNNGDVLAVNASSGETKWVSAGCHLG
        KRK  + V+ +GT  GDVLA++ +SG+ KW  + CH G
Subjt:  KRKNSSCVIAMGTNNGDVLAVNASSGETKWVSAGCHLG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAAGGAAATCCTTAAATCGCCGCCCATCACAACTTTCACTCCCGACGGCGACTTTCTATCCATCTTGTCATCCAATGGAACTGTTAAGGCAAGCTCCTTCTCTCT
CTATCGTTTGTATGTTTGCAGTTTTTCTCATGCTGATTTTTGCTTGAATATCCAACTACTTGACAAACTTTGGATTTGGAGTACTAGTGATGGGAGTTTACTGGCAGAAT
GGAAGGATCCTGAGGGAAAAACTGATATTGGTTATTCCTGTATGGCCTGCTGTTTTGTGGGGAAGAAGCGTAAAAACAGTTCTTGTGTAATTGCTATGGGTACCAACAAT
GGGGATGTGTTGGCTGTAAATGCTTCAAGCGGTGAGACAAAGTGGGTTTCTGCTGGTTGCCATCTTGGGCACGCAACTTACTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGAAGGAAATCCTTAAATCGCCGCCCATCACAACTTTCACTCCCGACGGCGACTTTCTATCCATCTTGTCATCCAATGGAACTGTTAAGGCAAGCTCCTTCTCTCT
CTATCGTTTGTATGTTTGCAGTTTTTCTCATGCTGATTTTTGCTTGAATATCCAACTACTTGACAAACTTTGGATTTGGAGTACTAGTGATGGGAGTTTACTGGCAGAAT
GGAAGGATCCTGAGGGAAAAACTGATATTGGTTATTCCTGTATGGCCTGCTGTTTTGTGGGGAAGAAGCGTAAAAACAGTTCTTGTGTAATTGCTATGGGTACCAACAAT
GGGGATGTGTTGGCTGTAAATGCTTCAAGCGGTGAGACAAAGTGGGTTTCTGCTGGTTGCCATCTTGGGCACGCAACTTACTCTTGA
Protein sequenceShow/hide protein sequence
MKKEILKSPPITTFTPDGDFLSILSSNGTVKASSFSLYRLYVCSFSHADFCLNIQLLDKLWIWSTSDGSLLAEWKDPEGKTDIGYSCMACCFVGKKRKNSSCVIAMGTNN
GDVLAVNASSGETKWVSAGCHLGHATYS