; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg021000 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg021000
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNA polymerase II transcription factor B subunit 4
Genome locationscaffold9:806389..812745
RNA-Seq ExpressionSpg021000
SyntenySpg021000
Gene Ontology termsGO:0006289 - nucleotide-excision repair (biological process)
GO:0070816 - phosphorylation of RNA polymerase II C-terminal domain (biological process)
GO:0000439 - transcription factor TFIIH core complex (cellular component)
GO:0005675 - transcription factor TFIIH holo complex (cellular component)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR004600 - TFIIH subunit Tfb4/GTF2H3
IPR036465 - von Willebrand factor A-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6578972.1 LysM domain-containing GPI-anchored protein 1, partial [Cucurbita argyrosperma subsp. sororia]4.4e-14481.46Show/hide
Query:  MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRGLEDGRMPALCTRLLKNLEEF
        MASAPSKLYADDVSLLVVLLDTNPFFWST SLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNR LEDGRMPALCTRLL NLEEF
Subjt:  MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRGLEDGRMPALCTRLLKNLEEF

Query:  MIGDEQSIKEDPKGGTMSSLLSGSLSMALCSIPKEEPCLHFFLDRSPWLCVLSLLMIFGADYFLVCVDSFLSSTIWKLSFIYIQKVFRSGSLHPQPRILC
        MIGDEQSIKEDP+GGTMSSLLSGSLSMALC                                                   YIQKVFRSGSLHP PRILC
Subjt:  MIGDEQSIKEDPKGGTMSSLLSGSLSMALCSIPKEEPCLHFFLDRSPWLCVLSLLMIFGADYFLVCVDSFLSSTIWKLSFIYIQKVFRSGSLHPQPRILC

Query:  LQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVYATDLHSRTFLQLPKSVGVDFRASCFCHKKTI
        LQGSPDGPEQYVAIMN+IFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTV+ATDLHSRTFLQLPKSVGVDFRASCFCHKKTI
Subjt:  LQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVYATDLHSRTFLQLPKSVGVDFRASCFCHKKTI

Query:  DMSYVCSVCLSIFCKHHKKCSTCGSVFGD
        DM +VCSVCLSIFCKHHKKCSTCGSVFG+
Subjt:  DMSYVCSVCLSIFCKHHKKCSTCGSVFGD

XP_004152842.1 general transcription and DNA repair factor IIH subunit TFB4 [Cucumis sativus]2.1e-14681.44Show/hide
Query:  MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRGLEDGRMPALCTRLLKNLEEF
        MASAPSKLYADDVSLLVVLLDTNPFFWSTS+LPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSN GLEDGRMPALCTRLLKNLEEF
Subjt:  MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRGLEDGRMPALCTRLLKNLEEF

Query:  MIGDEQSIKEDPKGGTMSSLLSGSLSMALCSIPKEEPCLHFFLDRSPWLCVLSLLMIFGADYFLVCVDSFLSSTIWKLSFIYIQKVFRSGSLHPQPRILC
        +IGDEQSIKEDPKGGTMSSLLSGSLSMALC                                                   YIQKVFRSGSLHPQPRILC
Subjt:  MIGDEQSIKEDPKGGTMSSLLSGSLSMALCSIPKEEPCLHFFLDRSPWLCVLSLLMIFGADYFLVCVDSFLSSTIWKLSFIYIQKVFRSGSLHPQPRILC

Query:  LQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVYATDLHSRTFLQLPKSVGVDFRASCFCHKKTI
        LQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTV+ TDLHSRTFLQLPKSVGVDFRASCFCHKKTI
Subjt:  LQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVYATDLHSRTFLQLPKSVGVDFRASCFCHKKTI

Query:  DMSYVCSVCLSIFCKHHKKCSTCGSVFGDASREM
        DM YVCSVCLSIFCKHHKKCSTCGSVFG+   E+
Subjt:  DMSYVCSVCLSIFCKHHKKCSTCGSVFGDASREM

XP_008441918.2 PREDICTED: LOW QUALITY PROTEIN: RNA polymerase II transcription factor B subunit 4 [Cucumis melo]8.9e-14580.84Show/hide
Query:  MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRGLEDGRMPALCTRLLKNLEEF
        MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSN GLEDGRMPALCTRLLKNLEEF
Subjt:  MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRGLEDGRMPALCTRLLKNLEEF

Query:  MIGDEQSIKEDPKGGTMSSLLSGSLSMALCSIPKEEPCLHFFLDRSPWLCVLSLLMIFGADYFLVCVDSFLSSTIWKLSFIYIQKVFRSGSLHPQPRILC
        +IGDEQSIKEDPKGGTMSSLLSGSLSMALC                                                   YIQKVFRSGSLHPQPRILC
Subjt:  MIGDEQSIKEDPKGGTMSSLLSGSLSMALCSIPKEEPCLHFFLDRSPWLCVLSLLMIFGADYFLVCVDSFLSSTIWKLSFIYIQKVFRSGSLHPQPRILC

Query:  LQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVYATDLHSRTFLQLPKSVGVDFRASCFCHKKTI
        LQGSPDGPEQYVAIMNAIFSAQRSMV IDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYL+TV+ TDLHSRTFLQLPKSVGVDFRASCFCH KTI
Subjt:  LQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVYATDLHSRTFLQLPKSVGVDFRASCFCHKKTI

Query:  DMSYVCSVCLSIFCKHHKKCSTCGSVFGDASREM
        DM YVCSVCLSIFCKHHKKCSTCGSVFG+   E+
Subjt:  DMSYVCSVCLSIFCKHHKKCSTCGSVFGDASREM

XP_023550583.1 RNA polymerase II transcription factor B subunit 4 [Cucurbita pepo subsp. pepo]4.4e-14481.46Show/hide
Query:  MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRGLEDGRMPALCTRLLKNLEEF
        MASAPSKLYADDVSLLVVLLDTNPFFWST SLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNR LEDGRMPALCTRLL NLEEF
Subjt:  MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRGLEDGRMPALCTRLLKNLEEF

Query:  MIGDEQSIKEDPKGGTMSSLLSGSLSMALCSIPKEEPCLHFFLDRSPWLCVLSLLMIFGADYFLVCVDSFLSSTIWKLSFIYIQKVFRSGSLHPQPRILC
        MIGDEQSIKEDP+GGTMSSLLSGSLSMALC                                                   YIQKVFRSGSLHP PRILC
Subjt:  MIGDEQSIKEDPKGGTMSSLLSGSLSMALCSIPKEEPCLHFFLDRSPWLCVLSLLMIFGADYFLVCVDSFLSSTIWKLSFIYIQKVFRSGSLHPQPRILC

Query:  LQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVYATDLHSRTFLQLPKSVGVDFRASCFCHKKTI
        LQGSPDGPEQYVAIMN+IFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTV+ATDLHSRTFLQLPKSVGVDFRASCFCHKKTI
Subjt:  LQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVYATDLHSRTFLQLPKSVGVDFRASCFCHKKTI

Query:  DMSYVCSVCLSIFCKHHKKCSTCGSVFGD
        DM +VCSVCLSIFCKHHKKCSTCGSVFG+
Subjt:  DMSYVCSVCLSIFCKHHKKCSTCGSVFGD

XP_038886688.1 general transcription and DNA repair factor IIH subunit TFB4 [Benincasa hispida]8.9e-14580.54Show/hide
Query:  MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRGLEDGRMPALCTRLLKNLEEF
        MASAP KLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSN GLEDGRMPALCTRLL NLEEF
Subjt:  MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRGLEDGRMPALCTRLLKNLEEF

Query:  MIGDEQSIKEDPKGGTMSSLLSGSLSMALCSIPKEEPCLHFFLDRSPWLCVLSLLMIFGADYFLVCVDSFLSSTIWKLSFIYIQKVFRSGSLHPQPRILC
        +I DEQS+KEDPKGGTMSSLLSGSLSMALC                                                   YIQKVFRSGSLHPQPRILC
Subjt:  MIGDEQSIKEDPKGGTMSSLLSGSLSMALCSIPKEEPCLHFFLDRSPWLCVLSLLMIFGADYFLVCVDSFLSSTIWKLSFIYIQKVFRSGSLHPQPRILC

Query:  LQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVYATDLHSRTFLQLPKSVGVDFRASCFCHKKTI
        LQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTV+ TDLHSRTFLQLPKSVGVDFRASCFCHKKTI
Subjt:  LQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVYATDLHSRTFLQLPKSVGVDFRASCFCHKKTI

Query:  DMSYVCSVCLSIFCKHHKKCSTCGSVFGDASREM
        DM YVCSVCLSIFCKHHKKCSTCGSVFG++  E+
Subjt:  DMSYVCSVCLSIFCKHHKKCSTCGSVFGDASREM

TrEMBL top hitse value%identityAlignment
A0A0A0LMM2 Uncharacterized protein1.0e-14681.44Show/hide
Query:  MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRGLEDGRMPALCTRLLKNLEEF
        MASAPSKLYADDVSLLVVLLDTNPFFWSTS+LPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSN GLEDGRMPALCTRLLKNLEEF
Subjt:  MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRGLEDGRMPALCTRLLKNLEEF

Query:  MIGDEQSIKEDPKGGTMSSLLSGSLSMALCSIPKEEPCLHFFLDRSPWLCVLSLLMIFGADYFLVCVDSFLSSTIWKLSFIYIQKVFRSGSLHPQPRILC
        +IGDEQSIKEDPKGGTMSSLLSGSLSMALC                                                   YIQKVFRSGSLHPQPRILC
Subjt:  MIGDEQSIKEDPKGGTMSSLLSGSLSMALCSIPKEEPCLHFFLDRSPWLCVLSLLMIFGADYFLVCVDSFLSSTIWKLSFIYIQKVFRSGSLHPQPRILC

Query:  LQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVYATDLHSRTFLQLPKSVGVDFRASCFCHKKTI
        LQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTV+ TDLHSRTFLQLPKSVGVDFRASCFCHKKTI
Subjt:  LQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVYATDLHSRTFLQLPKSVGVDFRASCFCHKKTI

Query:  DMSYVCSVCLSIFCKHHKKCSTCGSVFGDASREM
        DM YVCSVCLSIFCKHHKKCSTCGSVFG+   E+
Subjt:  DMSYVCSVCLSIFCKHHKKCSTCGSVFGDASREM

A0A1S3B4H7 LOW QUALITY PROTEIN: RNA polymerase II transcription factor B subunit 44.3e-14580.84Show/hide
Query:  MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRGLEDGRMPALCTRLLKNLEEF
        MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSN GLEDGRMPALCTRLLKNLEEF
Subjt:  MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRGLEDGRMPALCTRLLKNLEEF

Query:  MIGDEQSIKEDPKGGTMSSLLSGSLSMALCSIPKEEPCLHFFLDRSPWLCVLSLLMIFGADYFLVCVDSFLSSTIWKLSFIYIQKVFRSGSLHPQPRILC
        +IGDEQSIKEDPKGGTMSSLLSGSLSMALC                                                   YIQKVFRSGSLHPQPRILC
Subjt:  MIGDEQSIKEDPKGGTMSSLLSGSLSMALCSIPKEEPCLHFFLDRSPWLCVLSLLMIFGADYFLVCVDSFLSSTIWKLSFIYIQKVFRSGSLHPQPRILC

Query:  LQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVYATDLHSRTFLQLPKSVGVDFRASCFCHKKTI
        LQGSPDGPEQYVAIMNAIFSAQRSMV IDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYL+TV+ TDLHSRTFLQLPKSVGVDFRASCFCH KTI
Subjt:  LQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVYATDLHSRTFLQLPKSVGVDFRASCFCHKKTI

Query:  DMSYVCSVCLSIFCKHHKKCSTCGSVFGDASREM
        DM YVCSVCLSIFCKHHKKCSTCGSVFG+   E+
Subjt:  DMSYVCSVCLSIFCKHHKKCSTCGSVFGDASREM

A0A6J1CM09 RNA polymerase II transcription factor B subunit 4 isoform X14.0e-14380.55Show/hide
Query:  MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRGLEDGRMPALCTRLLKNLEEF
        MAS PSKLYADDVSLL+VLLDTNPFFWSTSSLPFSKFLSHVLAFLNSIL LNQLNEVVVIGTGYASCKYLYNSSS+SNRGLEDGRMPALCTRLLKNLEEF
Subjt:  MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRGLEDGRMPALCTRLLKNLEEF

Query:  MIGDEQSIKEDPKGGTMSSLLSGSLSMALCSIPKEEPCLHFFLDRSPWLCVLSLLMIFGADYFLVCVDSFLSSTIWKLSFIYIQKVFRSGSLHPQPRILC
        +I DEQS+KEDP+GGTMSSLLSGSLSMALC                                                   YIQKVFRSGSLHP PRILC
Subjt:  MIGDEQSIKEDPKGGTMSSLLSGSLSMALCSIPKEEPCLHFFLDRSPWLCVLSLLMIFGADYFLVCVDSFLSSTIWKLSFIYIQKVFRSGSLHPQPRILC

Query:  LQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVYATDLHSRTFLQLPKSVGVDFRASCFCHKKTI
        LQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTV+ATDLHSR FLQLPKSVGVDFRASCFCHKKTI
Subjt:  LQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVYATDLHSRTFLQLPKSVGVDFRASCFCHKKTI

Query:  DMSYVCSVCLSIFCKHHKKCSTCGSVFGD
        DM YVCSVCLSIFCKHHKKCSTCGSVFG+
Subjt:  DMSYVCSVCLSIFCKHHKKCSTCGSVFGD

A0A6J1FJQ6 RNA polymerase II transcription factor B subunit 46.2e-14481.16Show/hide
Query:  MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRGLEDGRMPALCTRLLKNLEEF
        MASAPSKLYADDVSLLVVLLDTNPFFWST SLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNR LEDGRMPALCTRLL NLEEF
Subjt:  MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRGLEDGRMPALCTRLLKNLEEF

Query:  MIGDEQSIKEDPKGGTMSSLLSGSLSMALCSIPKEEPCLHFFLDRSPWLCVLSLLMIFGADYFLVCVDSFLSSTIWKLSFIYIQKVFRSGSLHPQPRILC
        MIGDEQSI+EDP+GGTMSSLLSGSLSMALC                                                   YIQKVFRSGSLHP PRILC
Subjt:  MIGDEQSIKEDPKGGTMSSLLSGSLSMALCSIPKEEPCLHFFLDRSPWLCVLSLLMIFGADYFLVCVDSFLSSTIWKLSFIYIQKVFRSGSLHPQPRILC

Query:  LQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVYATDLHSRTFLQLPKSVGVDFRASCFCHKKTI
        LQGSPDGPEQYVAIMN+IFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTV+ATDLHSRTFLQLPKSVGVDFRASCFCHKKTI
Subjt:  LQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVYATDLHSRTFLQLPKSVGVDFRASCFCHKKTI

Query:  DMSYVCSVCLSIFCKHHKKCSTCGSVFGD
        DM +VCSVCLSIFCKHHKKCSTCGSVFG+
Subjt:  DMSYVCSVCLSIFCKHHKKCSTCGSVFGD

A0A6J1JZK7 RNA polymerase II transcription factor B subunit 43.1e-14380.85Show/hide
Query:  MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRGLEDGRMPALCTRLLKNLEEF
        MASAPSKLYADDVSLLVVLLDTNPFFWST SLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNR LEDGRMPALCTRLL NLEEF
Subjt:  MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRGLEDGRMPALCTRLLKNLEEF

Query:  MIGDEQSIKEDPKGGTMSSLLSGSLSMALCSIPKEEPCLHFFLDRSPWLCVLSLLMIFGADYFLVCVDSFLSSTIWKLSFIYIQKVFRSGSLHPQPRILC
        MIGDEQSIKEDP+ GTMSSLLSGSLSMALC                                                   Y+QKVFRSGSLHP PRILC
Subjt:  MIGDEQSIKEDPKGGTMSSLLSGSLSMALCSIPKEEPCLHFFLDRSPWLCVLSLLMIFGADYFLVCVDSFLSSTIWKLSFIYIQKVFRSGSLHPQPRILC

Query:  LQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVYATDLHSRTFLQLPKSVGVDFRASCFCHKKTI
        LQGSPDGPEQYVAIMN+IFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTV+ATDLHSRTFLQLPKSVGVDFRASCFCHKKTI
Subjt:  LQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVYATDLHSRTFLQLPKSVGVDFRASCFCHKKTI

Query:  DMSYVCSVCLSIFCKHHKKCSTCGSVFGD
        DM +VCSVCLSIFCKHHKKCSTCGSVFG+
Subjt:  DMSYVCSVCLSIFCKHHKKCSTCGSVFGD

SwissProt top hitse value%identityAlignment
Q05B56 General transcription factor IIH subunit 35.4e-3631.66Show/hide
Query:  DDVSLLVVLLDTNPFFWSTSSLPFSKF-----LSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLY----------------NSSSYSNRGLEDGRMPAL
        D+++LLV+++DTNP +W   +L  S+F     +  V+   NS L +N+ N++ VI +     ++LY                 SS ++  G +DG+   L
Subjt:  DDVSLLVVLLDTNPFFWSTSSLPFSKF-----LSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLY----------------NSSSYSNRGLEDGRMPAL

Query:  CTRLLKNLEEFMIGDEQSIKEDPKGGTMSSLLSGSLSMALCSIPKEEPCLHFFLDRSPWLCVLSLLMIFGADYFLVCVDSFLSSTIWKLSFIYIQKVFRS
                EE     +   K D +G    +LL+GSL+ ALC                                                 +I+       
Subjt:  CTRLLKNLEEFMIGDEQSIKEDPKGGTMSSLLSGSLSMALCSIPKEEPCLHFFLDRSPWLCVLSLLMIFGADYFLVCVDSFLSSTIWKLSFIYIQKVFRS

Query:  GSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVYATDLHSRTFLQLPKSVGVDF
         +   + RIL ++ + D   QY+  MN IF+AQ+  + ID+C + S +S  LQQA  ITGG+YLK  QM  L QYL  V+  D   R+ L LP  V VD+
Subjt:  GSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVYATDLHSRTFLQLPKSVGVDF

Query:  RASCFCHKKTIDMSYVCSVCLSIFCKHHKKCSTCGSVF
        RA+CFCH+  I++ YVCSVCLSIFC     C+TC + F
Subjt:  RASCFCHKKTIDMSYVCSVCLSIFCKHHKKCSTCGSVF

Q13889 General transcription factor IIH subunit 34.2e-3631.27Show/hide
Query:  DDVSLLVVLLDTNPFFWSTSSLPFSKF-----LSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLY---------------NSSSYSNRGLEDGRMPALC
        D+++LLV+++D NP +W   +L  S+F     +  V+   NS L +N+ N++ VI +     ++LY               N   ++  G +DG+     
Subjt:  DDVSLLVVLLDTNPFFWSTSSLPFSKF-----LSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLY---------------NSSSYSNRGLEDGRMPALC

Query:  TRLLKNLEEFMIGDEQSI--KEDPKGGTMSSLLSGSLSMALCSIPKEEPCLHFFLDRSPWLCVLSLLMIFGADYFLVCVDSFLSSTIWKLSFIYIQKVFR
          LL +  E ++ + + +  K D KG    +LL+GSL+ ALC                                                 +I+      
Subjt:  TRLLKNLEEFMIGDEQSI--KEDPKGGTMSSLLSGSLSMALCSIPKEEPCLHFFLDRSPWLCVLSLLMIFGADYFLVCVDSFLSSTIWKLSFIYIQKVFR

Query:  SGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVYATDLHSRTFLQLPKSVGVD
          +   + RIL ++ + D   QY+  MN IF+AQ+  + ID+C + S +S  LQQA  ITGG+YLK  QM  L QYL  V+  D   R+ L LP  V VD
Subjt:  SGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVYATDLHSRTFLQLPKSVGVD

Query:  FRASCFCHKKTIDMSYVCSVCLSIFCKHHKKCSTCGSVF
        +RA+CFCH+  I++ YVCSVCLSIFC     C+TC + F
Subjt:  FRASCFCHKKTIDMSYVCSVCLSIFCKHHKKCSTCGSVF

Q561R7 General transcription factor IIH subunit 39.3e-3630.77Show/hide
Query:  DDVSLLVVLLDTNPFFWSTSSLPFSKF-----LSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSS----------------YSNRGLEDGRMPAL
        D+++LLV+++DTNP +W   +L  S+F     +  V+   N+ L +N+ N++ VI +     ++LY   +                 +  G +DG+   L
Subjt:  DDVSLLVVLLDTNPFFWSTSSLPFSKF-----LSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSS----------------YSNRGLEDGRMPAL

Query:  CTRLLKNLEEFMIGDEQSIKEDPKGGTMSSLLSGSLSMALCSIPKEEPCLHFFLDRSPWLCVLSLLMIFGADYFLVCVDSFLSSTIWKLSFIYIQKVFRS
                EE     +   K D KG    +LL+GSL+ ALC I +    +                                                  
Subjt:  CTRLLKNLEEFMIGDEQSIKEDPKGGTMSSLLSGSLSMALCSIPKEEPCLHFFLDRSPWLCVLSLLMIFGADYFLVCVDSFLSSTIWKLSFIYIQKVFRS

Query:  GSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVYATDLHSRTFLQLPKSVGVDF
         +   + RIL ++ + D   QY+  MN IF+AQ+  + ID+C + S +S  LQQA  ITGG+YLK  QM  L QYL  V+  D   R+ L LP  + VD+
Subjt:  GSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVYATDLHSRTFLQLPKSVGVDF

Query:  RASCFCHKKTIDMSYVCSVCLSIFCKHHKKCSTCGSVF
        RA+CFCH+  I++ YVCSVCLSIFC     C+TC + F
Subjt:  RASCFCHKKTIDMSYVCSVCLSIFCKHHKKCSTCGSVF

Q86IB5 General transcription factor IIH subunit 37.3e-4134.01Show/hide
Query:  FSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRGLEDGRMPALCTRLLKNLEEFMIGDEQSIKEDPKGGTMSSLLSGSLSMALCSIP
        F+KFL H + F+N+ L+LNQ N++ +I +      +++  S+      E            + LE+  + +   +   P     +  + G +   L  + 
Subjt:  FSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRGLEDGRMPALCTRLLKNLEEFMIGDEQSIKEDPKGGTMSSLLSGSLSMALCSIP

Query:  KEEPCLHFFLDRSPWLCVLSLLMIFGADYFLVCVDSFLSSTIWKLSFIYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYI
         E                         D   +   SF +S    ++  YI ++ R  +   +PRIL    SPD   QY+++MN IFS+Q+  +P+DSC +
Subjt:  KEEPCLHFFLDRSPWLCVLSLLMIFGADYFLVCVDSFLSSTIWKLSFIYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYI

Query:  GSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVYATDLHSRTFLQLPKSVGVDFRASCFCHKKTIDMSYVCSVCLSIFCKHHKKCSTCGSVF
           +S FLQQAS++T G+YLKPQ+ + L QYL T +  D  SR  L  P    VD+RASCFCHK+ +D+ YVCSVCLSIFC H   CSTCG+ F
Subjt:  GSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVYATDLHSRTFLQLPKSVGVDFRASCFCHKKTIDMSYVCSVCLSIFCKHHKKCSTCGSVF

Q8LF41 General transcription and DNA repair factor IIH subunit TFB41.4e-10861.98Show/hide
Query:  MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRGLEDGR---MPALCTRLLKNL
        M +  SK Y+DDVSLLV+LLDTNP FWST+S+ FS+FLSHVLAFLN++L LNQLN+VVVI TGY+SC Y+Y+SS  SN G  +     MPA+   LLK L
Subjt:  MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRGLEDGR---MPALCTRLLKNL

Query:  EEFMIGDEQSIKEDPKGGTM-SSLLSGSLSMALCSIPKEEPCLHFFLDRSPWLCVLSLLMIFGADYFLVCVDSFLSSTIWKLSFIYIQKVFRSGSLHPQP
        EEF+  DE+  KE+     + S LLSGSLSMALC                                                   YIQ+VFRSG LHPQP
Subjt:  EEFMIGDEQSIKEDPKGGTM-SSLLSGSLSMALCSIPKEEPCLHFFLDRSPWLCVLSLLMIFGADYFLVCVDSFLSSTIWKLSFIYIQKVFRSGSLHPQP

Query:  RILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVYATDLHSRTFLQLPKSVGVDFRASCFCH
        RILCLQGSPDGPEQYVA+MN+IFSAQR MVPIDSCYIG  NSAFLQQASYITGGV+  P+Q+DGLFQYL+T++ATDLHSR F+QLPK +GVDFRASCFCH
Subjt:  RILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVYATDLHSRTFLQLPKSVGVDFRASCFCH

Query:  KKTIDMSYVCSVCLSIFCKHHKKCSTCGSVFGDA
        KKTIDM Y+CSVCLSIFC+HHKKCSTCGSVFG +
Subjt:  KKTIDMSYVCSVCLSIFCKHHKKCSTCGSVFGDA

Arabidopsis top hitse value%identityAlignment
AT1G18340.1 basal transcription factor complex subunit-related9.9e-11061.98Show/hide
Query:  MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRGLEDGR---MPALCTRLLKNL
        M +  SK Y+DDVSLLV+LLDTNP FWST+S+ FS+FLSHVLAFLN++L LNQLN+VVVI TGY+SC Y+Y+SS  SN G  +     MPA+   LLK L
Subjt:  MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRGLEDGR---MPALCTRLLKNL

Query:  EEFMIGDEQSIKEDPKGGTM-SSLLSGSLSMALCSIPKEEPCLHFFLDRSPWLCVLSLLMIFGADYFLVCVDSFLSSTIWKLSFIYIQKVFRSGSLHPQP
        EEF+  DE+  KE+     + S LLSGSLSMALC                                                   YIQ+VFRSG LHPQP
Subjt:  EEFMIGDEQSIKEDPKGGTM-SSLLSGSLSMALCSIPKEEPCLHFFLDRSPWLCVLSLLMIFGADYFLVCVDSFLSSTIWKLSFIYIQKVFRSGSLHPQP

Query:  RILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVYATDLHSRTFLQLPKSVGVDFRASCFCH
        RILCLQGSPDGPEQYVA+MN+IFSAQR MVPIDSCYIG  NSAFLQQASYITGGV+  P+Q+DGLFQYL+T++ATDLHSR F+QLPK +GVDFRASCFCH
Subjt:  RILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVYATDLHSRTFLQLPKSVGVDFRASCFCH

Query:  KKTIDMSYVCSVCLSIFCKHHKKCSTCGSVFGDA
        KKTIDM Y+CSVCLSIFC+HHKKCSTCGSVFG +
Subjt:  KKTIDMSYVCSVCLSIFCKHHKKCSTCGSVFGDA

AT1G21880.2 lysm domain GPI-anchored protein 1 precursor1.0e-0542.45Show/hide
Query:  PQESGPQQFPPRKAPPAIVIRDSNFAPAPAPQFDSSGSPA--PGLGLIPSTTGSLPGFSPASGPVGSTSGLNSAPSAASSLVYPLASISVAFLLFIIANF
        P+  GPQQF P  APP  V RD  +APAP+P FD  GS A  P   ++P   G LPG +PA+GP GS S  ++            +S+S  F+ F+I+  
Subjt:  PQESGPQQFPPRKAPPAIVIRDSNFAPAPAPQFDSSGSPA--PGLGLIPSTTGSLPGFSPASGPVGSTSGLNSAPSAASSLVYPLASISVAFLLFIIANF

Query:  FTSFSL
          SFSL
Subjt:  FTSFSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTCTGCTCCTTCGAAGCTCTATGCAGATGATGTTAGCCTTTTAGTGGTTTTACTGGATACGAATCCATTTTTCTGGAGCACATCTTCTCTCCCATTCTCCAAGTT
TCTCTCTCATGTACTTGCTTTTTTGAACTCCATTTTAGTTTTGAATCAACTTAATGAGGTTGTGGTCATTGGTACCGGATACGCCTCATGCAAGTATCTATATAATTCGT
CTTCGTACTCTAATCGTGGGCTTGAAGATGGTAGAATGCCTGCTCTTTGCACTCGTTTATTGAAGAATTTGGAGGAATTCATGATTGGGGATGAGCAGTCCATTAAGGAA
GACCCCAAAGGAGGAACCATGTCTTCACTTCTTTCTGGATCGCTCTCCATGGCTCTGTGTTCTATCCCAAAGGAGGAACCATGTCTTCACTTCTTTCTGGATCGCTCTCC
ATGGCTCTGTGTTCTATCCTTGTTGATGATTTTTGGTGCTGATTATTTTCTTGTTTGTGTTGATAGCTTCTTGTCGTCTACCATTTGGAAGTTATCTTTCATCTATATCC
AGAAAGTTTTCCGCTCCGGATCCCTCCATCCCCAACCTCGAATCCTTTGCTTGCAGGGATCCCCAGATGGACCTGAACAATATGTTGCAATCATGAATGCCATCTTTTCT
GCTCAACGTTCAATGGTTCCTATAGATTCATGTTACATTGGTTCACACAATTCTGCATTTCTTCAGCAGGCTTCTTACATAACTGGCGGAGTTTATCTGAAGCCTCAGCA
AATGGATGGGTTGTTTCAATATCTCTCTACTGTTTATGCCACTGATTTGCATTCCCGGACCTTCTTACAGCTTCCGAAGTCTGTTGGAGTGGATTTTCGTGCATCGTGTT
TTTGCCACAAAAAAACAATTGATATGAGCTATGTCTGTTCTGTTTGCCTATCTATATTCTGCAAGCATCACAAGAAATGTTCTACCTGTGGGTCAGTTTTTGGAGATGCC
TCAAGGGAAATGGGTGCTGGAAGAGGGTCGGTATTTGCCCTGACATTGTACGACACAGATCATGAGTTCGAAGAAGAGCTAGCATTCGAACTCAGTTGGATGTGGGAATA
TGGAATCATGGCAAGCAAGGACATGCACCCATATTCATCTTTATCAGTCCCACAAGAATCTGGGCCACAGCAATTCCCTCCTCGTAAAGCCCCGCCTGCTATAGTAATCA
GAGATTCAAATTTTGCACCTGCACCTGCTCCTCAATTTGATAGCAGTGGATCTCCTGCACCTGGATTGGGATTGATCCCTTCAACAACTGGTTCTCTCCCCGGATTCTCG
CCCGCTAGTGGCCCTGTTGGTAGTACTTCTGGGTTGAATTCTGCACCTTCTGCTGCTTCCTCATTGGTGTATCCATTAGCGAGTATCTCTGTTGCCTTTCTGTTATTTAT
CATCGCCAACTTCTTTACATCATTTTCATTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCTCTGCTCCTTCGAAGCTCTATGCAGATGATGTTAGCCTTTTAGTGGTTTTACTGGATACGAATCCATTTTTCTGGAGCACATCTTCTCTCCCATTCTCCAAGTT
TCTCTCTCATGTACTTGCTTTTTTGAACTCCATTTTAGTTTTGAATCAACTTAATGAGGTTGTGGTCATTGGTACCGGATACGCCTCATGCAAGTATCTATATAATTCGT
CTTCGTACTCTAATCGTGGGCTTGAAGATGGTAGAATGCCTGCTCTTTGCACTCGTTTATTGAAGAATTTGGAGGAATTCATGATTGGGGATGAGCAGTCCATTAAGGAA
GACCCCAAAGGAGGAACCATGTCTTCACTTCTTTCTGGATCGCTCTCCATGGCTCTGTGTTCTATCCCAAAGGAGGAACCATGTCTTCACTTCTTTCTGGATCGCTCTCC
ATGGCTCTGTGTTCTATCCTTGTTGATGATTTTTGGTGCTGATTATTTTCTTGTTTGTGTTGATAGCTTCTTGTCGTCTACCATTTGGAAGTTATCTTTCATCTATATCC
AGAAAGTTTTCCGCTCCGGATCCCTCCATCCCCAACCTCGAATCCTTTGCTTGCAGGGATCCCCAGATGGACCTGAACAATATGTTGCAATCATGAATGCCATCTTTTCT
GCTCAACGTTCAATGGTTCCTATAGATTCATGTTACATTGGTTCACACAATTCTGCATTTCTTCAGCAGGCTTCTTACATAACTGGCGGAGTTTATCTGAAGCCTCAGCA
AATGGATGGGTTGTTTCAATATCTCTCTACTGTTTATGCCACTGATTTGCATTCCCGGACCTTCTTACAGCTTCCGAAGTCTGTTGGAGTGGATTTTCGTGCATCGTGTT
TTTGCCACAAAAAAACAATTGATATGAGCTATGTCTGTTCTGTTTGCCTATCTATATTCTGCAAGCATCACAAGAAATGTTCTACCTGTGGGTCAGTTTTTGGAGATGCC
TCAAGGGAAATGGGTGCTGGAAGAGGGTCGGTATTTGCCCTGACATTGTACGACACAGATCATGAGTTCGAAGAAGAGCTAGCATTCGAACTCAGTTGGATGTGGGAATA
TGGAATCATGGCAAGCAAGGACATGCACCCATATTCATCTTTATCAGTCCCACAAGAATCTGGGCCACAGCAATTCCCTCCTCGTAAAGCCCCGCCTGCTATAGTAATCA
GAGATTCAAATTTTGCACCTGCACCTGCTCCTCAATTTGATAGCAGTGGATCTCCTGCACCTGGATTGGGATTGATCCCTTCAACAACTGGTTCTCTCCCCGGATTCTCG
CCCGCTAGTGGCCCTGTTGGTAGTACTTCTGGGTTGAATTCTGCACCTTCTGCTGCTTCCTCATTGGTGTATCCATTAGCGAGTATCTCTGTTGCCTTTCTGTTATTTAT
CATCGCCAACTTCTTTACATCATTTTCATTGTAA
Protein sequenceShow/hide protein sequence
MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRGLEDGRMPALCTRLLKNLEEFMIGDEQSIKE
DPKGGTMSSLLSGSLSMALCSIPKEEPCLHFFLDRSPWLCVLSLLMIFGADYFLVCVDSFLSSTIWKLSFIYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFS
AQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVYATDLHSRTFLQLPKSVGVDFRASCFCHKKTIDMSYVCSVCLSIFCKHHKKCSTCGSVFGDA
SREMGAGRGSVFALTLYDTDHEFEEELAFELSWMWEYGIMASKDMHPYSSLSVPQESGPQQFPPRKAPPAIVIRDSNFAPAPAPQFDSSGSPAPGLGLIPSTTGSLPGFS
PASGPVGSTSGLNSAPSAASSLVYPLASISVAFLLFIIANFFTSFSL