CuGenDBv2

Gene ID	Spg021076
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	RNA polymerase II C-terminal domain phosphatase-like
Genome location	scaffold9:3484577..3489068
RNA-Seq Expression	Spg021076
Synteny	Spg021076
Gene Ontology terms	GO:0070940 - dephosphorylation of RNA polymerase II C-terminal domain (biological process) GO:0005634 - nucleus (cellular component) GO:0008420 - RNA polymerase II CTD heptapeptide repeat phosphatase activity (molecular function)
InterPro domains	IPR039189 - CTD phosphatase Fcp1

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6607512.1 RNA polymerase II C-terminal domain phosphatase-like 4, partial [Cucurbita argyrosperma subsp. sororia]

1.2e-45

89.38

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Query:  MSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERIKRRKVEKLENPEEDILYGVEGQSSEVLSKQQLCSHPGSFGNMCIVCGQRL
        MS+VTNSPAHSSSSDDFAAFLDVALDSHSSDSSP+EKAEG NN VE+ERIKR KVEKLEN  EDILYGVE  SSEVLSKQQLCSHPGSFGNMCI+CGQRL
Subjt:  MSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERIKRRKVEKLENPEEDILYGVEGQSSEVLSKQQLCSHPGSFGNMCIVCGQRL

Query:  DEEAGVTFGYIHK
        DEE+GVTFGYIHK
Subjt:  DEEAGVTFGYIHK

KAG7037160.1 RNA polymerase II C-terminal domain phosphatase-like 4 [Cucurbita argyrosperma subsp. argyrosperma]

1.2e-45

89.38

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Query:  MSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERIKRRKVEKLENPEEDILYGVEGQSSEVLSKQQLCSHPGSFGNMCIVCGQRL
        MS+VTNSPAHSSSSDDFAAFLDVALDSHSSDSSP+EKAEG NN VE+ERIKR KVEKLEN  EDILYGVE  SSEVLSKQQLCSHPGSFGNMCI+CGQRL
Subjt:  MSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERIKRRKVEKLENPEEDILYGVEGQSSEVLSKQQLCSHPGSFGNMCIVCGQRL

Query:  DEEAGVTFGYIHK
        DEE+GVTFGYIHK
Subjt:  DEEAGVTFGYIHK

XP_022133134.1 RNA polymerase II C-terminal domain phosphatase-like 4 isoform X1 [Momordica charantia]

2.1e-45

87.93

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Query:  MSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERIKRRKVEKL---ENPEEDILYGVEGQSSEVLSKQQLCSHPGSFGNMCIVCG
        MS+VTNSPAHSSSSDDFAAFLDVALDSHSSDSSP+EKAEGDNN VESER+KRRKVE+L   E P+EDI YGVE QSSEVLSKQQLCSHPGSFGNMCI+CG
Subjt:  MSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERIKRRKVEKL---ENPEEDILYGVEGQSSEVLSKQQLCSHPGSFGNMCIVCG

Query:  QRLDEEAGVTFGYIHK
        QRLDEE+GVTFGYIHK
Subjt:  QRLDEEAGVTFGYIHK

XP_023525838.1 RNA polymerase II C-terminal domain phosphatase-like 4 [Cucurbita pepo subsp. pepo]

1.2e-45

89.38

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Query:  MSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERIKRRKVEKLENPEEDILYGVEGQSSEVLSKQQLCSHPGSFGNMCIVCGQRL
        MS+VTNSPAHSSSSDDFAAFLDVALDSHSSDSSP+EKAEG NN VE+ERIKR KVEKLEN  EDILYGVE  SSEVLSKQQLCSHPGSFGNMCI+CGQRL
Subjt:  MSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERIKRRKVEKLENPEEDILYGVEGQSSEVLSKQQLCSHPGSFGNMCIVCGQRL

Query:  DEEAGVTFGYIHK
        DEE+GVTFGYIHK
Subjt:  DEEAGVTFGYIHK

XP_038890381.1 RNA polymerase II C-terminal domain phosphatase-like 4 isoform X1 [Benincasa hispida]

1.1e-46

90.27

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Query:  MSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERIKRRKVEKLENPEEDILYGVEGQSSEVLSKQQLCSHPGSFGNMCIVCGQRL
        MS+ TNSPAHSSSSDDFAAFLDVALDSHSSDSSP EKAEGDNN  ESERIKRRKVEKLEN EEDILYGVE QSSE +SKQQLCSHPGSFGNMCI+CGQRL
Subjt:  MSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERIKRRKVEKLENPEEDILYGVEGQSSEVLSKQQLCSHPGSFGNMCIVCGQRL

Query:  DEEAGVTFGYIHK
        DEE+GVTFGYIHK
Subjt:  DEEAGVTFGYIHK

TrEMBL top hits

e value

%identity

Alignment

A0A6J1BUF9 RNA polymerase II C-terminal domain phosphatase-like

9.9e-46

87.93

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Query:  MSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERIKRRKVEKL---ENPEEDILYGVEGQSSEVLSKQQLCSHPGSFGNMCIVCG
        MS+VTNSPAHSSSSDDFAAFLDVALDSHSSDSSP+EKAEGDNN VESER+KRRKVE+L   E P+EDI YGVE QSSEVLSKQQLCSHPGSFGNMCI+CG
Subjt:  MSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERIKRRKVEKL---ENPEEDILYGVEGQSSEVLSKQQLCSHPGSFGNMCIVCG

Query:  QRLDEEAGVTFGYIHK
        QRLDEE+GVTFGYIHK
Subjt:  QRLDEEAGVTFGYIHK

A0A6J1BV42 RNA polymerase II C-terminal domain phosphatase-like

9.9e-46

87.93

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Query:  MSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERIKRRKVEKL---ENPEEDILYGVEGQSSEVLSKQQLCSHPGSFGNMCIVCG
        MS+VTNSPAHSSSSDDFAAFLDVALDSHSSDSSP+EKAEGDNN VESER+KRRKVE+L   E P+EDI YGVE QSSEVLSKQQLCSHPGSFGNMCI+CG
Subjt:  MSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERIKRRKVEKL---ENPEEDILYGVEGQSSEVLSKQQLCSHPGSFGNMCIVCG

Query:  QRLDEEAGVTFGYIHK
        QRLDEE+GVTFGYIHK
Subjt:  QRLDEEAGVTFGYIHK

A0A6J1CJQ5 RNA polymerase II C-terminal domain phosphatase-like

1.9e-44

86.21

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Query:  MSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERIKRRKVEKL---ENPEEDILYGVEGQSSEVLSKQQLCSHPGSFGNMCIVCG
        MS+VT+SPAHSSSSDDFAAFLDVALDSHSSDSSP+EKAEGDNN VESERIKRRKVEKL   E P+EDI+Y VE QSSEVLSKQQLC HPGSFGNMCI+CG
Subjt:  MSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERIKRRKVEKL---ENPEEDILYGVEGQSSEVLSKQQLCSHPGSFGNMCIVCG

Query:  QRLDEEAGVTFGYIHK
        QRLD E+GVTFGYIHK
Subjt:  QRLDEEAGVTFGYIHK

A0A6J1GC38 RNA polymerase II C-terminal domain phosphatase-like

8.4e-45

88.5

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Query:  MSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERIKRRKVEKLENPEEDILYGVEGQSSEVLSKQQLCSHPGSFGNMCIVCGQRL
        MS+VTNS AHSSSSDDFAAFLDVALDSHSSDSSP+EKAEG NN VE+ERIKR KVEKLEN  EDILYGVE  SSEVLSKQQLCSHPGSFGNMCI+CGQRL
Subjt:  MSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERIKRRKVEKLENPEEDILYGVEGQSSEVLSKQQLCSHPGSFGNMCIVCGQRL

Query:  DEEAGVTFGYIHK
        DEE+GVTFGYIHK
Subjt:  DEEAGVTFGYIHK

A0A6J1ID30 RNA polymerase II C-terminal domain phosphatase-like

2.9e-45

88.5

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Query:  MSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERIKRRKVEKLENPEEDILYGVEGQSSEVLSKQQLCSHPGSFGNMCIVCGQRL
        MS+VTNSPAHSSSSDDFAAFLDVALDSHSSDS P+EKAEG NN VE+ERIKR KVEKLEN  EDILYGVE  SSEVLSKQQLCSHPGSFGNMCI+CGQRL
Subjt:  MSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERIKRRKVEKLENPEEDILYGVEGQSSEVLSKQQLCSHPGSFGNMCIVCGQRL

Query:  DEEAGVTFGYIHK
        DEE+GVTFGYIHK
Subjt:  DEEAGVTFGYIHK

SwissProt top hits

e value

%identity

Alignment

Q00IB6 RNA polymerase II C-terminal domain phosphatase-like 4

2.1e-16

50.43

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Query:  MSIVTNSPAH-SSSSDDFAAFLDVALDSHSSDSS-PDEKAEGDNNVVESERIKRRKVEKLENPEEDILYGVEGQSSEVLSKQQLCSHPGSFGNMCIVCGQ
        MS+ ++SP H SSSSDD AAFLD  LDS S  SS P E+ E +++V     +KR+K+E LE               E  S +  C HPGSFGNMC VCGQ
Subjt:  MSIVTNSPAH-SSSSDDFAAFLDVALDSHSSDSS-PDEKAEGDNNVVESERIKRRKVEKLENPEEDILYGVEGQSSEVLSKQQLCSHPGSFGNMCIVCGQ

Query:  RLDEEAGVTFGYIHK
        +L EE GV+F YIHK
Subjt:  RLDEEAGVTFGYIHK

Arabidopsis top hits

e value

%identity

Alignment

AT5G58003.1 C-terminal domain phosphatase-like 4

1.5e-17

50.43

Show/hide

Query:  MSIVTNSPAH-SSSSDDFAAFLDVALDSHSSDSS-PDEKAEGDNNVVESERIKRRKVEKLENPEEDILYGVEGQSSEVLSKQQLCSHPGSFGNMCIVCGQ
        MS+ ++SP H SSSSDD AAFLD  LDS S  SS P E+ E +++V     +KR+K+E LE               E  S +  C HPGSFGNMC VCGQ
Subjt:  MSIVTNSPAH-SSSSDDFAAFLDVALDSHSSDSS-PDEKAEGDNNVVESERIKRRKVEKLENPEEDILYGVEGQSSEVLSKQQLCSHPGSFGNMCIVCGQ

Query:  RLDEEAGVTFGYIHK
        +L EE GV+F YIHK
Subjt:  RLDEEAGVTFGYIHK

Sequences

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CDS sequence

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ATGAATAAAGGAAAGAGAAAAGCCCCAACAGCTCCACGCCAGTTGTTTTCTTCTTCACGCCGTCTCATCCTCCGTTTCAGCCGTTCACTGGTGCCGCCGGCTCTCTCCCG
TTCACTGCTGCCGCCGCCATCATTCTTTCTTTCAATCGTGCCTCCGCAGCCTCCCTTTAGCAGTTTTACACTGATTTTGTACTCCCTTGTTGGTAGCGCCGCCACTGCCT
CCGATCAAACTTCGGCGTCCACAGAGAGCGTCGGGAGGACTTTTCCCTCCCATCTCCAGCGTCGTGTGCGTGCGTCCGACGTAGGCAGCAGCGATAGCAAGTTCTTCCGG
TGTGGGTTTTGTTTCCGTGTGTTTCCGGCGATCCGAGCGGCTCCGACGTTATTTCCTCTCAACCAACAGAGGGTTGTGAGCTCGCGCGGGGTGCTTTTTCCGGCAGCACC
ACCAGCGAGTGGGAAGCAATTAGCCGAGATGAGCATTGTGACTAATTCTCCAGCTCACTCGTCGAGCAGTGACGATTTTGCTGCATTTCTTGATGTAGCTCTAGATTCCC
ATTCCTCTGACTCATCGCCCGATGAAAAGGCTGAGGGTGACAATAATGTTGTTGAAAGTGAGAGGATAAAACGTCGTAAAGTGGAGAAGCTGGAAAACCCAGAGGAGGAC
ATTCTGTATGGAGTTGAAGGGCAAAGTTCAGAAGTATTATCAAAGCAGCAACTATGCAGTCATCCTGGTTCATTTGGAAATATGTGTATCGTCTGTGGGCAGAGGTTGGA
TGAGGAAGCTGGCGTGACATTTGGGTATATACATAAGGTATATTTTCTTTACATGGATGTGTGA

mRNA sequence

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Protein sequence

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MNKGKRKAPTAPRQLFSSSRRLILRFSRSLVPPALSRSLLPPPSFFLSIVPPQPPFSSFTLILYSLVGSAATASDQTSASTESVGRTFPSHLQRRVRASDVGSSDSKFFR
CGFCFRVFPAIRAAPTLFPLNQQRVVSSRGVLFPAAPPASGKQLAEMSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERIKRRKVEKLENPEED
ILYGVEGQSSEVLSKQQLCSHPGSFGNMCIVCGQRLDEEAGVTFGYIHKVYFLYMDV

Spg021076 (gene) of Sponge gourd (cylindrica) v1 genome