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Spg021099 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg021099
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold9:1519572..1520102
RNA-Seq ExpressionSpg021099
SyntenySpg021099
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4273082.1 unnamed protein product [Prunus armeniaca]3.7e-0838.66Show/hide
Query:  LGWAVRDSSGSLVIAGCKRVERNWSILTAEASAMREGLSNFLKSSTCNSLPLIVESDSSALVKILQGH-EVDLSEAKNIVDDIEDLAREVTEICFEWCPR
        +GW VRDS G +V AG K   R  S L  EA A+RE L   ++S       L VESDS  +++++ G   +D++    IV DI+ L  +     F + PR
Subjt:  LGWAVRDSSGSLVIAGCKRVERNWSILTAEASAMREGLSNFLKSSTCNSLPLIVESDSSALVKILQGH-EVDLSEAKNIVDDIEDLAREVTEICFEWCPR

Query:  SCNQAAHTLAQKVGSVGSM
        +CN+AAH +A  V  VG +
Subjt:  SCNQAAHTLAQKVGSVGSM

CAB4274760.1 unnamed protein product [Prunus armeniaca]1.8e-0736.7Show/hide
Query:  LGWAVRDSSGSLVIAGCKRVERNWSILTAEASAMREGLSNFLKSSTCNSLPLIVESDSSALVKILQGHEVDLSEAKNIVDDIEDLAREVTEICFEWCPRS
        +GW +RDS G L+ AG +      S +  E  A+R  LS   + +  +   +IVESDS   + +L G     S+ + IV DI  L   ++ + F + PRS
Subjt:  LGWAVRDSSGSLVIAGCKRVERNWSILTAEASAMREGLSNFLKSSTCNSLPLIVESDSSALVKILQGHEVDLSEAKNIVDDIEDLAREVTEICFEWCPRS

Query:  CNQAAHTLA
        CNQAAH++A
Subjt:  CNQAAHTLA

CAB4279811.1 unnamed protein product [Prunus armeniaca]8.8e-1040.34Show/hide
Query:  LGWAVRDSSGSLVIAGCKRVERNWSILTAEASAMREGLSNFLKSSTCNSLPLIVESDSSALVKILQGH-EVDLSEAKNIVDDIEDLAREVTEICFEWCPR
        +GW VRDS G +V AGCK   R  S L  EA A+RE L   ++S       L VESDS  L+++L G   +D++  + IV DI+ L  +     F + PR
Subjt:  LGWAVRDSSGSLVIAGCKRVERNWSILTAEASAMREGLSNFLKSSTCNSLPLIVESDSSALVKILQGH-EVDLSEAKNIVDDIEDLAREVTEICFEWCPR

Query:  SCNQAAHTLAQKVGSVGSM
        +CN+AAH +   V  VG +
Subjt:  SCNQAAHTLAQKVGSVGSM

CAB4303756.1 unnamed protein product [Prunus armeniaca]6.3e-0836.21Show/hide
Query:  LGWAVRDSSGSLVIAGCKRVERNWSILTAEASAMREGLSNFLKSSTCNSLPLIVESDSSALVKILQGHEVDLSEAKNIVDDIEDLAREVTEICFEWCPRS
        +GW +RDS G L+ AG +      S +  E  A+R  LS   + +  +   +IVESDS   + +L G     S+ + IV DI  L   ++ + F + PRS
Subjt:  LGWAVRDSSGSLVIAGCKRVERNWSILTAEASAMREGLSNFLKSSTCNSLPLIVESDSSALVKILQGHEVDLSEAKNIVDDIEDLAREVTEICFEWCPRS

Query:  CNQAAHTLAQKVGSVG
        CNQAAH++A  V   G
Subjt:  CNQAAHTLAQKVGSVG

ONI22498.1 hypothetical protein PRUPE_2G133200 [Prunus persica]3.4e-0935.29Show/hide
Query:  GWAVRDSSGSLVIAGCKRVERNWSILTAEASAMREGLSNFLKSSTCNSLPLIVESDSSALVKILQGHEVDLSEAKNIVDDIEDLAREVTEICFEWCPRSC
        GW +RD  G ++ AG KR  R  S L AE  A+R  +    +    +   +IVESDS + +++++G  V  +E + ++ DI  + RE+ E+ F + PRSC
Subjt:  GWAVRDSSGSLVIAGCKRVERNWSILTAEASAMREGLSNFLKSSTCNSLPLIVESDSSALVKILQGHEVDLSEAKNIVDDIEDLAREVTEICFEWCPRSC

Query:  NQAAHTLAQKVGSVGSMFF
        N AAH +A      G +F+
Subjt:  NQAAHTLAQKVGSVGSMFF

TrEMBL top hitse value%identityAlignment
A0A251QFD7 RNase H domain-containing protein1.6e-0935.29Show/hide
Query:  GWAVRDSSGSLVIAGCKRVERNWSILTAEASAMREGLSNFLKSSTCNSLPLIVESDSSALVKILQGHEVDLSEAKNIVDDIEDLAREVTEICFEWCPRSC
        GW +RD  G ++ AG KR  R  S L AE  A+R  +    +    +   +IVESDS + +++++G  V  +E + ++ DI  + RE+ E+ F + PRSC
Subjt:  GWAVRDSSGSLVIAGCKRVERNWSILTAEASAMREGLSNFLKSSTCNSLPLIVESDSSALVKILQGHEVDLSEAKNIVDDIEDLAREVTEICFEWCPRSC

Query:  NQAAHTLAQKVGSVGSMFF
        N AAH +A      G +F+
Subjt:  NQAAHTLAQKVGSVGSMFF

A0A6J5UAY2 Reverse transcriptase domain-containing protein1.8e-0838.66Show/hide
Query:  LGWAVRDSSGSLVIAGCKRVERNWSILTAEASAMREGLSNFLKSSTCNSLPLIVESDSSALVKILQGH-EVDLSEAKNIVDDIEDLAREVTEICFEWCPR
        +GW VRDS G +V AG K   R  S L  EA A+RE L   ++S       L VESDS  +++++ G   +D++    IV DI+ L  +     F + PR
Subjt:  LGWAVRDSSGSLVIAGCKRVERNWSILTAEASAMREGLSNFLKSSTCNSLPLIVESDSSALVKILQGH-EVDLSEAKNIVDDIEDLAREVTEICFEWCPR

Query:  SCNQAAHTLAQKVGSVGSM
        +CN+AAH +A  V  VG +
Subjt:  SCNQAAHTLAQKVGSVGSM

A0A6J5UV01 Reverse transcriptase domain-containing protein4.3e-1040.34Show/hide
Query:  LGWAVRDSSGSLVIAGCKRVERNWSILTAEASAMREGLSNFLKSSTCNSLPLIVESDSSALVKILQGH-EVDLSEAKNIVDDIEDLAREVTEICFEWCPR
        +GW VRDS G +V AGCK   R  S L  EA A+RE L   ++S       L VESDS  L+++L G   +D++  + IV DI+ L  +     F + PR
Subjt:  LGWAVRDSSGSLVIAGCKRVERNWSILTAEASAMREGLSNFLKSSTCNSLPLIVESDSSALVKILQGH-EVDLSEAKNIVDDIEDLAREVTEICFEWCPR

Query:  SCNQAAHTLAQKVGSVGSM
        +CN+AAH +   V  VG +
Subjt:  SCNQAAHTLAQKVGSVGSM

A0A6J5WPU6 Reverse transcriptase domain-containing protein3.1e-0836.21Show/hide
Query:  LGWAVRDSSGSLVIAGCKRVERNWSILTAEASAMREGLSNFLKSSTCNSLPLIVESDSSALVKILQGHEVDLSEAKNIVDDIEDLAREVTEICFEWCPRS
        +GW +RDS G L+ AG +      S +  E  A+R  LS   + +  +   +IVESDS   + +L G     S+ + IV DI  L   ++ + F + PRS
Subjt:  LGWAVRDSSGSLVIAGCKRVERNWSILTAEASAMREGLSNFLKSSTCNSLPLIVESDSSALVKILQGHEVDLSEAKNIVDDIEDLAREVTEICFEWCPRS

Query:  CNQAAHTLAQKVGSVG
        CNQAAH++A  V   G
Subjt:  CNQAAHTLAQKVGSVG

M5X3Z4 RNase H domain-containing protein (Fragment)4.7e-0937.04Show/hide
Query:  GWAVRDSSGSLVIAGCKRVERNWSILTAEASAMREGLSNFLKSSTCNSLPLIVESDSSALVKILQGHEVDLSEAKNIVDDIEDLAREVTEICFEWCPRSC
        GW +RD  G ++ AG KR  R  S L AE  A+R  +    +    +   +IVESDS + +++++G  V  +E + ++ DI  + RE+ E+ F + PRSC
Subjt:  GWAVRDSSGSLVIAGCKRVERNWSILTAEASAMREGLSNFLKSSTCNSLPLIVESDSSALVKILQGHEVDLSEAKNIVDDIEDLAREVTEICFEWCPRSC

Query:  NQAAHTLA
        N AAH +A
Subjt:  NQAAHTLA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein3.0e-0830.65Show/hide
Query:  LGWAVRDSSGSLVIAGCKRVERNWSILTAEASAMREGLSNFLKSSTCNSLPLIVESDSSALVKILQGHEVDLSEAKNIVDDIEDLAREVTEICFEWCPRS
        +GW +R+ SG ++  G + + R  ++L AE  A+R  +   L  S  N   +I ESD+ ALV +L   +      +  ++DI+ L     E+ FE+ PR 
Subjt:  LGWAVRDSSGSLVIAGCKRVERNWSILTAEASAMREGLSNFLKSSTCNSLPLIVESDSSALVKILQGHEVDLSEAKNIVDDIEDLAREVTEICFEWCPRS

Query:  CNQAAHTLAQKVGSVGSMFFSSND
         N+ A  +A++     S+ FS+ D
Subjt:  CNQAAHTLAQKVGSVGSMFFSSND

AT4G29090.1 Ribonuclease H-like superfamily protein4.4e-0730.63Show/hide
Query:  LGWAVRDSSGSLVIAGCKRVERNWSILTAEASAMREGLSNFLKSSTCNSLPLIVESDSSALVKILQGHEVDLSEAKNIVDDIEDLAREVTEICFEWCPRS
        +GW +R+  G +   G + + +  S+L AE  AMR  +   L  S      +I ESDS  L++IL   E+     K  + D++ L  + TE+ F + PR 
Subjt:  LGWAVRDSSGSLVIAGCKRVERNWSILTAEASAMREGLSNFLKSSTCNSLPLIVESDSSALVKILQGHEVDLSEAKNIVDDIEDLAREVTEICFEWCPRS

Query:  CNQAAHTLAQK
         N  A  +A++
Subjt:  CNQAAHTLAQK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAGTTTTGAATCTAGAACTTGGATGGGCAGTGCGTGACTCCTCCGGGTCTTTGGTTATAGCCGGCTGCAAGAGGGTGGAGAGGAATTGGAGCATTCTGACGGCAGA
AGCTTCTGCTATGAGAGAAGGCTTGTCCAACTTTCTGAAATCTAGCACATGCAACTCCCTCCCGCTCATCGTGGAGTCTGATTCGAGCGCTTTAGTGAAGATTCTGCAAG
GGCATGAAGTCGATCTCTCTGAGGCAAAGAACATTGTGGACGATATCGAGGATTTGGCTAGAGAGGTGACCGAAATTTGTTTCGAGTGGTGTCCGAGGAGCTGCAATCAA
GCAGCGCATACTCTCGCTCAAAAAGTGGGGAGCGTTGGTTCGATGTTCTTCTCATCGAATGATTTTTGTATGAACTCTGTAAATGATTTTGTGTGTTTTTCTCCTATGAT
GAAGGAGAATGGTTTTGGGCAAACGGTTTTACCTGAGTGGTTTTCCTCTTTATTGCATGAGGAAGTTAGTTGTATTGGTGTTGGCAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGAGTTTTGAATCTAGAACTTGGATGGGCAGTGCGTGACTCCTCCGGGTCTTTGGTTATAGCCGGCTGCAAGAGGGTGGAGAGGAATTGGAGCATTCTGACGGCAGA
AGCTTCTGCTATGAGAGAAGGCTTGTCCAACTTTCTGAAATCTAGCACATGCAACTCCCTCCCGCTCATCGTGGAGTCTGATTCGAGCGCTTTAGTGAAGATTCTGCAAG
GGCATGAAGTCGATCTCTCTGAGGCAAAGAACATTGTGGACGATATCGAGGATTTGGCTAGAGAGGTGACCGAAATTTGTTTCGAGTGGTGTCCGAGGAGCTGCAATCAA
GCAGCGCATACTCTCGCTCAAAAAGTGGGGAGCGTTGGTTCGATGTTCTTCTCATCGAATGATTTTTGTATGAACTCTGTAAATGATTTTGTGTGTTTTTCTCCTATGAT
GAAGGAGAATGGTTTTGGGCAAACGGTTTTACCTGAGTGGTTTTCCTCTTTATTGCATGAGGAAGTTAGTTGTATTGGTGTTGGCAGTTGA
Protein sequenceShow/hide protein sequence
MRVLNLELGWAVRDSSGSLVIAGCKRVERNWSILTAEASAMREGLSNFLKSSTCNSLPLIVESDSSALVKILQGHEVDLSEAKNIVDDIEDLAREVTEICFEWCPRSCNQ
AAHTLAQKVGSVGSMFFSSNDFCMNSVNDFVCFSPMMKENGFGQTVLPEWFSSLLHEEVSCIGVGS