CuGenDBv2

Gene ID	Spg021133
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	E3 ubiquitin-protein ligase RNF34
Genome location	scaffold6:45577870..45581770
RNA-Seq Expression	Spg021133
Synteny	Spg021133
Gene Ontology terms	GO:0000492 - box C/D snoRNP assembly (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0062064 - box C/D snoRNP complex binding (molecular function)
InterPro domains	IPR027921 - NOP protein chaperone 1

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_008448773.1 PREDICTED: uncharacterized protein LOC103490838 [Cucumis melo]

9.8e-77

83.9

Show/hide

Query:  MRHASKDLLYLERKDLSSLSLESSLLVCKKNSTSKEPCRNEKPITEPAPKSQLLGRVKDFLGVILEANKKLQVDAKDNAEKYDIEALDGNESEVIEMDLM
        MRHASKDLL+LERKDLS+ SLESSLLVCKKNSTSKEPCRNEKPITEPA KS +LGRV+DFLGVI EANKKLQ+D+K+NA+KYDIEALDGNESEVI++DLM
Subjt:  MRHASKDLLYLERKDLSSLSLESSLLVCKKNSTSKEPCRNEKPITEPAPKSQLLGRVKDFLGVILEANKKLQVDAKDNAEKYDIEALDGNESEVIEMDLM

Query:  LGIADLHTPEAVSAAESAIVGNQPVIPLTCSSSSSSESESEESSDDSISSDNNNYDKEKSDDQNTDSGNRSSVKLKRSKSRKISLRSKSKGKGKSKKRPK
        LGIADLHTPEAV+AAESAI+GN PVIPLTC   SSSESESEESSDDSI+SD++N D EKSDDQNTD  NR SVKLKRS SRK S RSKSKGKGKSKKRPK
Subjt:  LGIADLHTPEAVSAAESAIVGNQPVIPLTCSSSSSSESESEESSDDSISSDNNNYDKEKSDDQNTDSGNRSSVKLKRSKSRKISLRSKSKGKGKSKKRPK

Query:  IVELS
        I  LS
Subjt:  IVELS

XP_022936657.1 uncharacterized protein LOC111443185 isoform X1 [Cucurbita moschata]

8.8e-78

84.39

Show/hide

Query:  MRHASKDLLYLERKDLSSLSLESSLLVCKKNSTSKEPCRNEKPITEPAPKSQLLGRVKDFLGVILEANKKLQVDAKDNAEKYDIEALDGNESEVIEMDLM
        MRHASKDLL LERKDL S S ESSLLVCKKNSTSKEPCRNEKPITEPAPKSQ+LGRVKDFLGV+ EANKKLQ+DAKD+AEKYDIEAL+G+ESEVIE+DLM
Subjt:  MRHASKDLLYLERKDLSSLSLESSLLVCKKNSTSKEPCRNEKPITEPAPKSQLLGRVKDFLGVILEANKKLQVDAKDNAEKYDIEALDGNESEVIEMDLM

Query:  LGIADLHTPEAVSAAESAIVGNQPVIPLTCSSSSSSESESEESSDDSISSDNNNYDKEKSDDQNTDSGNRSSVKLKRSKSRKISLRSKSKGKGKSKKRPK
        LGIADLHTPEAV+AAESAI+GNQPVI L CSSSSS ESESEESSDDSI+SDNN+ D EKSD+QNTD GNR SVKLKR KSRK + RS+SK KGKS KRPK
Subjt:  LGIADLHTPEAVSAAESAIVGNQPVIPLTCSSSSSSESESEESSDDSISSDNNNYDKEKSDDQNTDSGNRSSVKLKRSKSRKISLRSKSKGKGKSKKRPK

Query:  IVELS
        I+ELS
Subjt:  IVELS

XP_023005549.1 uncharacterized protein LOC111498503 isoform X1 [Cucurbita maxima]

1.0e-78

85.44

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Query:  MRHASKDLLYLERKDLSSLSLESSLLVCKKNSTSKEPCRNEKPITEPAPKSQLLGRVKDFLGVILEANKKLQVDAKDNAEKYDIEALDGNESEVIEMDLM
        MRHASKDLL LERKDL S SLESSLLVCKKNSTSKEPCRNEKPITEPAPKSQ+LGRVKDFLGV+ EANKKLQ+DAKD+AEKYDIEAL+GNESEVIE+DLM
Subjt:  MRHASKDLLYLERKDLSSLSLESSLLVCKKNSTSKEPCRNEKPITEPAPKSQLLGRVKDFLGVILEANKKLQVDAKDNAEKYDIEALDGNESEVIEMDLM

Query:  LGIADLHTPEAVSAAESAIVGNQPVIPLTC-SSSSSSESESEESSDDSISSDNNNYDKEKSDDQNTDSGNRSSVKLKRSKSRKISLRSKSKGKGKSKKRP
        LGIADLHTPEAV+AAESAI+GNQPVIPL C SSSSSSESESEESSDDSI+SDNN+ D EKSD QNTD GNR SVKLKRSKSR+ + RS+S+ KGKS KRP
Subjt:  LGIADLHTPEAVSAAESAIVGNQPVIPLTC-SSSSSSESESEESSDDSISSDNNNYDKEKSDDQNTDSGNRSSVKLKRSKSRKISLRSKSKGKGKSKKRP

Query:  KIVELS
        KI+ELS
Subjt:  KIVELS

XP_023539679.1 uncharacterized protein LOC111800292 isoform X1 [Cucurbita pepo subsp. pepo]

4.0e-78

84.95

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Query:  MRHASKDLLYLERKDLSSLSLESSLLVCKKNSTSKEPCRNEKPITEPAPKSQLLGRVKDFLGVILEANKKLQVDAKDNAEKYDIEALDGNESEVIEMDLM
        MRHASKDLL LERKDL S SLESSLLVCKKNSTSKEPCRNEKPITEPAPKSQ+LGRVKDFLGV+ EANKKLQ+DAKD+AEKYDIEAL+G+ESEVIE+DLM
Subjt:  MRHASKDLLYLERKDLSSLSLESSLLVCKKNSTSKEPCRNEKPITEPAPKSQLLGRVKDFLGVILEANKKLQVDAKDNAEKYDIEALDGNESEVIEMDLM

Query:  LGIADLHTPEAVSAAESAIVGNQPVIPLTCS-SSSSSESESEESSDDSISSDNNNYDKEKSDDQNTDSGNRSSVKLKRSKSRKISLRSKSKGKGKSKKRP
        LGIADLHTPEAV+AAESAI+GNQPVIPL CS SSSSSESESEE+SDDSI+SDNN+ D EKSD++NTD GNR SVKLKRSKSRK + RS+SK KGKSKKRP
Subjt:  LGIADLHTPEAVSAAESAIVGNQPVIPLTCS-SSSSSESESEESSDDSISSDNNNYDKEKSDDQNTDSGNRSSVKLKRSKSRKISLRSKSKGKGKSKKRP

Query:  KIVELS
        +I+ELS
Subjt:  KIVELS

XP_038903017.1 uncharacterized protein LOC120089721 [Benincasa hispida]

1.5e-77

86.83

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Query:  MRHASKDLLYLERKDLSSLSLESSLLVCKKNSTSKEPCRNEKPITEPAPKSQLLGRVKDFLGVILEANKKLQVDAKDNAEKYDIEALDGNESEVIEMDLM
        MRH SKDLLYLERKDLSS SLESSLLVCKKNSTSKEP RNEKPITEPA KS +LGRVKDFLGVI EANKKLQ+DAKDNAEKYDIEALDGNES+VIE+DLM
Subjt:  MRHASKDLLYLERKDLSSLSLESSLLVCKKNSTSKEPCRNEKPITEPAPKSQLLGRVKDFLGVILEANKKLQVDAKDNAEKYDIEALDGNESEVIEMDLM

Query:  LGIADLHTPEAVSAAESAIVGNQPVIPLTCSSSSSSESESEESSDDSISSDNNNYDKEKSDDQNTDSGNRSSVKLKRSKSRKISLRSKSKGKGKSKKRPK
        LGIADLHTPEAV+AAESAI+GNQPVIPLTC  SSSSESESEESSDDSI+S++NN D EKSDDQNTD  NRSSVKLKRS SRK S RSKSKGK KS+KRPK
Subjt:  LGIADLHTPEAVSAAESAIVGNQPVIPLTCSSSSSSESESEESSDDSISSDNNNYDKEKSDDQNTDSGNRSSVKLKRSKSRKISLRSKSKGKGKSKKRPK

Query:  IVELS
        I+ELS
Subjt:  IVELS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L448 Uncharacterized protein

6.8e-76

83.9

Show/hide

Query:  MRHASKDLLYLERKDLSSLSLESSLLVCKKNSTSKEPCRNEKPITEPAPKSQLLGRVKDFLGVILEANKKLQVDAKDNAEKYDIEALDGNESEVIEMDLM
        MRH SKDLLYLERKDLSS SLESSLLVCKKNSTSK+P RNEKPITEPA KS +LGRVKDFLGVI EANKKLQ+D+K+NAEKYDIEALDGNESEVI++DLM
Subjt:  MRHASKDLLYLERKDLSSLSLESSLLVCKKNSTSKEPCRNEKPITEPAPKSQLLGRVKDFLGVILEANKKLQVDAKDNAEKYDIEALDGNESEVIEMDLM

Query:  LGIADLHTPEAVSAAESAIVGNQPVIPLTCSSSSSSESESEESSDDSISSDNNNYDKEKSDDQNTDSGNRSSVKLKRSKSRKISLRSKSKGKGKSKKRPK
        LGIADLHTPEAV+AAESAI+GN PVIPLTC   SSSESESEESSDDSI+SD++N D EKSDDQ TD  NR SVKLKRS SRK S RSKSKGKGKSKKRPK
Subjt:  LGIADLHTPEAVSAAESAIVGNQPVIPLTCSSSSSSESESEESSDDSISSDNNNYDKEKSDDQNTDSGNRSSVKLKRSKSRKISLRSKSKGKGKSKKRPK

Query:  IVELS
        I  LS
Subjt:  IVELS

A0A1S3BJW4 uncharacterized protein LOC103490838

4.7e-77

83.9

Show/hide

Query:  MRHASKDLLYLERKDLSSLSLESSLLVCKKNSTSKEPCRNEKPITEPAPKSQLLGRVKDFLGVILEANKKLQVDAKDNAEKYDIEALDGNESEVIEMDLM
        MRHASKDLL+LERKDLS+ SLESSLLVCKKNSTSKEPCRNEKPITEPA KS +LGRV+DFLGVI EANKKLQ+D+K+NA+KYDIEALDGNESEVI++DLM
Subjt:  MRHASKDLLYLERKDLSSLSLESSLLVCKKNSTSKEPCRNEKPITEPAPKSQLLGRVKDFLGVILEANKKLQVDAKDNAEKYDIEALDGNESEVIEMDLM

Query:  LGIADLHTPEAVSAAESAIVGNQPVIPLTCSSSSSSESESEESSDDSISSDNNNYDKEKSDDQNTDSGNRSSVKLKRSKSRKISLRSKSKGKGKSKKRPK
        LGIADLHTPEAV+AAESAI+GN PVIPLTC   SSSESESEESSDDSI+SD++N D EKSDDQNTD  NR SVKLKRS SRK S RSKSKGKGKSKKRPK
Subjt:  LGIADLHTPEAVSAAESAIVGNQPVIPLTCSSSSSSESESEESSDDSISSDNNNYDKEKSDDQNTDSGNRSSVKLKRSKSRKISLRSKSKGKGKSKKRPK

Query:  IVELS
        I  LS
Subjt:  IVELS

A0A5D3CJH5 E3 ubiquitin-protein ligase RNF34

4.7e-77

83.9

Show/hide

Query:  MRHASKDLLYLERKDLSSLSLESSLLVCKKNSTSKEPCRNEKPITEPAPKSQLLGRVKDFLGVILEANKKLQVDAKDNAEKYDIEALDGNESEVIEMDLM
        MRHASKDLL+LERKDLS+ SLESSLLVCKKNSTSKEPCRNEKPITEPA KS +LGRV+DFLGVI EANKKLQ+D+K+NA+KYDIEALDGNESEVI++DLM
Subjt:  MRHASKDLLYLERKDLSSLSLESSLLVCKKNSTSKEPCRNEKPITEPAPKSQLLGRVKDFLGVILEANKKLQVDAKDNAEKYDIEALDGNESEVIEMDLM

Query:  LGIADLHTPEAVSAAESAIVGNQPVIPLTCSSSSSSESESEESSDDSISSDNNNYDKEKSDDQNTDSGNRSSVKLKRSKSRKISLRSKSKGKGKSKKRPK
        LGIADLHTPEAV+AAESAI+GN PVIPLTC   SSSESESEESSDDSI+SD++N D EKSDDQNTD  NR SVKLKRS SRK S RSKSKGKGKSKKRPK
Subjt:  LGIADLHTPEAVSAAESAIVGNQPVIPLTCSSSSSSESESEESSDDSISSDNNNYDKEKSDDQNTDSGNRSSVKLKRSKSRKISLRSKSKGKGKSKKRPK

Query:  IVELS
        I  LS
Subjt:  IVELS

A0A6J1F913 uncharacterized protein LOC111443185 isoform X1

4.3e-78

84.39

Show/hide

Query:  MRHASKDLLYLERKDLSSLSLESSLLVCKKNSTSKEPCRNEKPITEPAPKSQLLGRVKDFLGVILEANKKLQVDAKDNAEKYDIEALDGNESEVIEMDLM
        MRHASKDLL LERKDL S S ESSLLVCKKNSTSKEPCRNEKPITEPAPKSQ+LGRVKDFLGV+ EANKKLQ+DAKD+AEKYDIEAL+G+ESEVIE+DLM
Subjt:  MRHASKDLLYLERKDLSSLSLESSLLVCKKNSTSKEPCRNEKPITEPAPKSQLLGRVKDFLGVILEANKKLQVDAKDNAEKYDIEALDGNESEVIEMDLM

Query:  LGIADLHTPEAVSAAESAIVGNQPVIPLTCSSSSSSESESEESSDDSISSDNNNYDKEKSDDQNTDSGNRSSVKLKRSKSRKISLRSKSKGKGKSKKRPK
        LGIADLHTPEAV+AAESAI+GNQPVI L CSSSSS ESESEESSDDSI+SDNN+ D EKSD+QNTD GNR SVKLKR KSRK + RS+SK KGKS KRPK
Subjt:  LGIADLHTPEAVSAAESAIVGNQPVIPLTCSSSSSSESESEESSDDSISSDNNNYDKEKSDDQNTDSGNRSSVKLKRSKSRKISLRSKSKGKGKSKKRPK

Query:  IVELS
        I+ELS
Subjt:  IVELS

A0A6J1KZJ8 uncharacterized protein LOC111498503 isoform X1

5.0e-79

85.44

Show/hide

Query:  MRHASKDLLYLERKDLSSLSLESSLLVCKKNSTSKEPCRNEKPITEPAPKSQLLGRVKDFLGVILEANKKLQVDAKDNAEKYDIEALDGNESEVIEMDLM
        MRHASKDLL LERKDL S SLESSLLVCKKNSTSKEPCRNEKPITEPAPKSQ+LGRVKDFLGV+ EANKKLQ+DAKD+AEKYDIEAL+GNESEVIE+DLM
Subjt:  MRHASKDLLYLERKDLSSLSLESSLLVCKKNSTSKEPCRNEKPITEPAPKSQLLGRVKDFLGVILEANKKLQVDAKDNAEKYDIEALDGNESEVIEMDLM

Query:  LGIADLHTPEAVSAAESAIVGNQPVIPLTC-SSSSSSESESEESSDDSISSDNNNYDKEKSDDQNTDSGNRSSVKLKRSKSRKISLRSKSKGKGKSKKRP
        LGIADLHTPEAV+AAESAI+GNQPVIPL C SSSSSSESESEESSDDSI+SDNN+ D EKSD QNTD GNR SVKLKRSKSR+ + RS+S+ KGKS KRP
Subjt:  LGIADLHTPEAVSAAESAIVGNQPVIPLTC-SSSSSSESESEESSDDSISSDNNNYDKEKSDDQNTDSGNRSSVKLKRSKSRKISLRSKSKGKGKSKKRP

Query:  KIVELS
        KI+ELS
Subjt:  KIVELS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G71430.1 unknown protein

8.4e-26

Show/hide

Query:  KDLLYLERKDLSSLS-LESSLLVC---KKNSTSKEPCRNEKPITEPAPKSQLLGRVKDFLGVILEANKKLQVDAKDNAEKYDIEALDGNESEVIEMDLML
        KDLL LE K+ SS S ++S+LL+C    K     E     KP   P PKSQLLG++K FLGV+ EANKK    ++ N E Y+IEAL GNESE+IEMDLML
Subjt:  KDLLYLERKDLSSLS-LESSLLVC---KKNSTSKEPCRNEKPITEPAPKSQLLGRVKDFLGVILEANKKLQVDAKDNAEKYDIEALDGNESEVIEMDLML

Query:  GIADLHTPEAVSAAESAIVGNQPVIPLTCSSSSSSESESEESSDDSISSD
        G+ADL+TPEAVSAAE+AI G  P    +  SSS  ES+SE   ++S S++
Subjt:  GIADLHTPEAVSAAESAIVGNQPVIPLTCSSSSSSESESEESSDDSISSD

Sequences

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CDS sequence

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ATGCGGCATGCTAGCAAGGATCTTTTGTATTTGGAGCGGAAGGATTTATCCTCTTTGTCTTTAGAGTCCTCACTGCTAGTTTGTAAAAAGAATTCAACGTCCAAGGAGCC
CTGTCGGAATGAAAAACCCATTACAGAACCAGCTCCAAAAAGCCAATTATTGGGAAGAGTCAAAGACTTCTTAGGAGTAATATTAGAAGCTAATAAAAAGTTGCAAGTGG
ATGCAAAGGACAATGCTGAAAAGTATGATATTGAAGCGCTTGATGGCAATGAATCAGAAGTCATTGAAATGGACCTGATGTTGGGTATCGCTGATCTTCATACTCCTGAA
GCTGTGTCTGCTGCTGAATCTGCAATAGTTGGTAACCAGCCTGTGATTCCATTGACTTGTAGCAGTAGTAGTAGTAGTGAATCTGAGTCTGAAGAGAGTAGTGATGATAG
TATTAGCAGTGACAACAATAACTATGACAAGGAAAAGAGTGACGATCAGAATACTGACAGTGGTAACAGATCGTCAGTTAAACTCAAAAGATCAAAGTCTAGAAAAATCA
GTCTTAGAAGTAAAAGTAAAGGAAAAGGTAAATCAAAAAAGCGACCAAAGATTGTAGAGCTTTCTTAA

mRNA sequence

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Protein sequence

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MRHASKDLLYLERKDLSSLSLESSLLVCKKNSTSKEPCRNEKPITEPAPKSQLLGRVKDFLGVILEANKKLQVDAKDNAEKYDIEALDGNESEVIEMDLMLGIADLHTPE
AVSAAESAIVGNQPVIPLTCSSSSSSESESEESSDDSISSDNNNYDKEKSDDQNTDSGNRSSVKLKRSKSRKISLRSKSKGKGKSKKRPKIVELS

Spg021133 (gene) of Sponge gourd (cylindrica) v1 genome