; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg021148 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg021148
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionLSD1 zinc finger family protein
Genome locationscaffold6:46393673..46396014
RNA-Seq ExpressionSpg021148
SyntenySpg021148
Gene Ontology termsGO:0034051 - negative regulation of plant-type hypersensitive response (biological process)
GO:0045595 - regulation of cell differentiation (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR005735 - Zinc finger, LSD1-type
IPR040319 - LSD1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8650032.1 hypothetical protein Csa_010851 [Cucumis sativus]8.9e-5788.33Show/hide
Query:  MPFPPATCCQSQIVCSGCKNLLIYPAGATSICCALCHAVSPVPTSGIAMARLVCRGCHTLLMYSRGATSVQCSCCRTVNSASKANQTAHINCGNCRVLLM
        MPFPP TCCQ+QI+CSGCKNLLIYPAGATSICCALCHAV+PVPTSG+ MARLVC GC+TLLMYSRGA SVQCSCCRT+N+AS+ANQ AHINCGNCRVLLM
Subjt:  MPFPPATCCQSQIVCSGCKNLLIYPAGATSICCALCHAVSPVPTSGIAMARLVCRGCHTLLMYSRGATSVQCSCCRTVNSASKANQTAHINCGNCRVLLM

Query:  YQCGAHSVKCTLCNFVTSVG
        YQC AHSVKCTLCNFVTSVG
Subjt:  YQCGAHSVKCTLCNFVTSVG

XP_008448703.1 PREDICTED: protein LOL1 isoform X1 [Cucumis melo]3.4e-5687.5Show/hide
Query:  MPFPPATCCQSQIVCSGCKNLLIYPAGATSICCALCHAVSPVPTSGIAMARLVCRGCHTLLMYSRGATSVQCSCCRTVNSASKANQTAHINCGNCRVLLM
        MPFP  TCCQ+QI+CSGCKN+LIYPAGATSICCALCHAV+PVPTSG+ MARLVC GC+TLLMYSRGATSVQCSCCRT+N+ASKANQ AH NCGNCRVLLM
Subjt:  MPFPPATCCQSQIVCSGCKNLLIYPAGATSICCALCHAVSPVPTSGIAMARLVCRGCHTLLMYSRGATSVQCSCCRTVNSASKANQTAHINCGNCRVLLM

Query:  YQCGAHSVKCTLCNFVTSVG
        YQC AHSVKCTLCNFVTSVG
Subjt:  YQCGAHSVKCTLCNFVTSVG

XP_022145337.1 protein LSD1-like [Momordica charantia]1.4e-5485Show/hide
Query:  MPFPPATCCQSQIVCSGCKNLLIYPAGATSICCALCHAVSPVPTSGIAMARLVCRGCHTLLMYSRGATSVQCSCCRTVNSASKANQTAHINCGNCRVLLM
        MP PP TCCQS++VCSGCKNLLIYP GATSICC LCH+VSPVPT G+ MARLVC+GCHTLL++SRGATSVQCSCCRTVNSASKANQTA INC NCR+LLM
Subjt:  MPFPPATCCQSQIVCSGCKNLLIYPAGATSICCALCHAVSPVPTSGIAMARLVCRGCHTLLMYSRGATSVQCSCCRTVNSASKANQTAHINCGNCRVLLM

Query:  YQCGAHSVKCTLCNFVTSVG
        YQCGAHSV+CTLCNFVT VG
Subjt:  YQCGAHSVKCTLCNFVTSVG

XP_031738784.1 protein LSD1 [Cucumis sativus]8.9e-5788.33Show/hide
Query:  MPFPPATCCQSQIVCSGCKNLLIYPAGATSICCALCHAVSPVPTSGIAMARLVCRGCHTLLMYSRGATSVQCSCCRTVNSASKANQTAHINCGNCRVLLM
        MPFPP TCCQ+QI+CSGCKNLLIYPAGATSICCALCHAV+PVPTSG+ MARLVC GC+TLLMYSRGA SVQCSCCRT+N+AS+ANQ AHINCGNCRVLLM
Subjt:  MPFPPATCCQSQIVCSGCKNLLIYPAGATSICCALCHAVSPVPTSGIAMARLVCRGCHTLLMYSRGATSVQCSCCRTVNSASKANQTAHINCGNCRVLLM

Query:  YQCGAHSVKCTLCNFVTSVG
        YQC AHSVKCTLCNFVTSVG
Subjt:  YQCGAHSVKCTLCNFVTSVG

XP_038903355.1 protein LSD1-like [Benincasa hispida]3.8e-5587.5Show/hide
Query:  MPFPPATCCQSQIVCSGCKNLLIYPAGATSICCALCHAVSPVPTSGIAMARLVCRGCHTLLMYSRGATSVQCSCCRTVNSASKANQTAHINCGNCRVLLM
        MPFPP TCC++ IVCSGCK LLIYPAGAT ICCALCH VSPVPTSG+ MARLVC GCHTLLMYSRGATSVQCSCCRTVN+AS+ANQ AHINCGNCRV+LM
Subjt:  MPFPPATCCQSQIVCSGCKNLLIYPAGATSICCALCHAVSPVPTSGIAMARLVCRGCHTLLMYSRGATSVQCSCCRTVNSASKANQTAHINCGNCRVLLM

Query:  YQCGAHSVKCTLCNFVTSVG
        YQ GAHSVKCTLCNFVTSVG
Subjt:  YQCGAHSVKCTLCNFVTSVG

TrEMBL top hitse value%identityAlignment
A0A068UZC5 Uncharacterized protein8.5e-4572.73Show/hide
Query:  MPF-PPATCCQSQIVCSGCKNLLIYPAGATSICCALCHAVSPVPTSGIAMARLVCRGCHTLLMYSRGATSVQCSCCRTVNSASKANQTAHINCGNCRVLL
        +PF PPAT  QSQ+VCSGC+NLL+YP GATS+CCA+C+AV+ VP  G  MA+LVC GCHTLLMY RGATSVQCSCC T+N A +ANQ AH+NCGNCR+LL
Subjt:  MPF-PPATCCQSQIVCSGCKNLLIYPAGATSICCALCHAVSPVPTSGIAMARLVCRGCHTLLMYSRGATSVQCSCCRTVNSASKANQTAHINCGNCRVLL

Query:  MYQCGAHSVKCTLCNFVTSVG
        MYQ GA SVKC +CNFVTS+G
Subjt:  MYQCGAHSVKCTLCNFVTSVG

A0A1S3BJQ2 protein LSD1 isoform X21.0e-5378.95Show/hide
Query:  MPFPPATCCQSQIVCSGCKNLLIYPAGATSICCALCHAVSPVPTSGIAMARLVCRGCHTLLMYSRGATSVQCSCCRTVNSASK-------------ANQT
        MPFP  TCCQ+QI+CSGCKN+LIYPAGATSICCALCHAV+PVPTSG+ MARLVC GC+TLLMYSRGATSVQCSCCRT+N+ASK             ANQ 
Subjt:  MPFPPATCCQSQIVCSGCKNLLIYPAGATSICCALCHAVSPVPTSGIAMARLVCRGCHTLLMYSRGATSVQCSCCRTVNSASK-------------ANQT

Query:  AHINCGNCRVLLMYQCGAHSVKCTLCNFVTSVG
        AH NCGNCRVLLMYQC AHSVKCTLCNFVTSVG
Subjt:  AHINCGNCRVLLMYQCGAHSVKCTLCNFVTSVG

A0A1S3BKC0 protein LOL1 isoform X11.6e-5687.5Show/hide
Query:  MPFPPATCCQSQIVCSGCKNLLIYPAGATSICCALCHAVSPVPTSGIAMARLVCRGCHTLLMYSRGATSVQCSCCRTVNSASKANQTAHINCGNCRVLLM
        MPFP  TCCQ+QI+CSGCKN+LIYPAGATSICCALCHAV+PVPTSG+ MARLVC GC+TLLMYSRGATSVQCSCCRT+N+ASKANQ AH NCGNCRVLLM
Subjt:  MPFPPATCCQSQIVCSGCKNLLIYPAGATSICCALCHAVSPVPTSGIAMARLVCRGCHTLLMYSRGATSVQCSCCRTVNSASKANQTAHINCGNCRVLLM

Query:  YQCGAHSVKCTLCNFVTSVG
        YQC AHSVKCTLCNFVTSVG
Subjt:  YQCGAHSVKCTLCNFVTSVG

A0A6J1CWA3 protein LSD1-like6.9e-5585Show/hide
Query:  MPFPPATCCQSQIVCSGCKNLLIYPAGATSICCALCHAVSPVPTSGIAMARLVCRGCHTLLMYSRGATSVQCSCCRTVNSASKANQTAHINCGNCRVLLM
        MP PP TCCQS++VCSGCKNLLIYP GATSICC LCH+VSPVPT G+ MARLVC+GCHTLL++SRGATSVQCSCCRTVNSASKANQTA INC NCR+LLM
Subjt:  MPFPPATCCQSQIVCSGCKNLLIYPAGATSICCALCHAVSPVPTSGIAMARLVCRGCHTLLMYSRGATSVQCSCCRTVNSASKANQTAHINCGNCRVLLM

Query:  YQCGAHSVKCTLCNFVTSVG
        YQCGAHSV+CTLCNFVT VG
Subjt:  YQCGAHSVKCTLCNFVTSVG

A0A6P6TVJ0 protein LOL1 isoform X28.5e-4572.73Show/hide
Query:  MPF-PPATCCQSQIVCSGCKNLLIYPAGATSICCALCHAVSPVPTSGIAMARLVCRGCHTLLMYSRGATSVQCSCCRTVNSASKANQTAHINCGNCRVLL
        +PF PPAT  QSQ+VCSGC+NLL+YP GATS+CCA+C+AV+ VP  G  MA+LVC GCHTLLMY RGATSVQCSCC T+N A +ANQ AH+NCGNCR+LL
Subjt:  MPF-PPATCCQSQIVCSGCKNLLIYPAGATSICCALCHAVSPVPTSGIAMARLVCRGCHTLLMYSRGATSVQCSCCRTVNSASKANQTAHINCGNCRVLL

Query:  MYQCGAHSVKCTLCNFVTSVG
        MYQ GA SVKC +CNFVTS+G
Subjt:  MYQCGAHSVKCTLCNFVTSVG

SwissProt top hitse value%identityAlignment
P94077 Protein LSD14.1e-2852.07Show/hide
Query:  QSQIVCSGCKNLLIYPAGATSICCALCHAVS--PVPTSGIAMARLVCRGCHTLLMYSRGATSVQCSCCRTVNSA-SKANQTAH--------INCGNCRVL
        Q Q+VC GC+NLL+YP GA+++ CALC+ ++  P P     MA ++C GC T+LMY+RGA+SV+CSCC+T N   + +NQ AH        INCG+CR  
Subjt:  QSQIVCSGCKNLLIYPAGATSICCALCHAVS--PVPTSGIAMARLVCRGCHTLLMYSRGATSVQCSCCRTVNSA-SKANQTAH--------INCGNCRVL

Query:  LMYQCGAHSVKCTLCNFVTSV
        LMY  GA SVKC +C FVT+V
Subjt:  LMYQCGAHSVKCTLCNFVTSV

Q0J7V9 Protein LSD11.5e-4672.5Show/hide
Query:  MPFPPATCCQSQIVCSGCKNLLIYPAGATSICCALCHAVSPVPTSGIAMARLVCRGCHTLLMYSRGATSVQCSCCRTVNSASKANQTAHINCGNCRVLLM
        +PF P    QSQ+VCSGC+NLL+YPAGATS+CCA+C  V+ VP  G  MA+LVC GCHTLLMY RGATSVQCSCC TVN A +ANQ AH+NCGNCR+LLM
Subjt:  MPFPPATCCQSQIVCSGCKNLLIYPAGATSICCALCHAVSPVPTSGIAMARLVCRGCHTLLMYSRGATSVQCSCCRTVNSASKANQTAHINCGNCRVLLM

Query:  YQCGAHSVKCTLCNFVTSVG
        YQ GA SVKC +CNFVTSVG
Subjt:  YQCGAHSVKCTLCNFVTSVG

Q2QMB3 Protein LOL25.9e-3558.26Show/hide
Query:  QSQIVCSGCKNLLIYPAGATSICCALCHAV-SPVPTSGIAMARLVCRGCHTLLMYSRGATSVQCSCCRTVNSASKANQTAHINCGNCRVLLMYQCGAHSV
        QSQIVC GC+N+L+YP GA S+CCA+CHAV S  P+ G+ +A L+C GC TLLMY+R ATSV+CSCC TVN     +  AH+NCG C+ +LMY  GA SV
Subjt:  QSQIVCSGCKNLLIYPAGATSICCALCHAV-SPVPTSGIAMARLVCRGCHTLLMYSRGATSVQCSCCRTVNSASKANQTAHINCGNCRVLLMYQCGAHSV

Query:  KCTLCNFVTSVGWDS
        KC +CNF+T+ G ++
Subjt:  KCTLCNFVTSVGWDS

Q6ASS2 Protein LOL32.3e-3153.45Show/hide
Query:  QSQIVCSGCKNLLIYPAGATSICCALCHAVS--PVPTSGIAMARLVCRGCHTLLMYSRGATSVQCSCCRTVNSASKANQTAHINCGNCRVLLMYQCGAHS
        QSQIVC GC+++L YP+GA S+CCALC A++  P P   + MA L+C GC TLLMY+R A +V+CSCC TVN     N  AH++CG CR  LMY  GA S
Subjt:  QSQIVCSGCKNLLIYPAGATSICCALCHAVS--PVPTSGIAMARLVCRGCHTLLMYSRGATSVQCSCCRTVNSASKANQTAHINCGNCRVLLMYQCGAHS

Query:  VKCTLCNFVTSVGWDS
        VKC +C+++T+ G ++
Subjt:  VKCTLCNFVTSVGWDS

Q93ZB1 Protein LOL11.8e-4472.5Show/hide
Query:  PPA---TCCQSQIVCSGCKNLLIYPAGATSICCALCHAVSPVPTSGIAMARLVCRGCHTLLMYSRGATSVQCSCCRTVNSASKANQTAHINCGNCRVLLM
        PPA   T  QSQ+VCSGC+NLL+YP GATS+CCA+C+AV+ VP  G  MA+LVC GCHTLLMY RGATSVQCSCC TVN A +ANQ AH+NCGNC +LLM
Subjt:  PPA---TCCQSQIVCSGCKNLLIYPAGATSICCALCHAVSPVPTSGIAMARLVCRGCHTLLMYSRGATSVQCSCCRTVNSASKANQTAHINCGNCRVLLM

Query:  YQCGAHSVKCTLCNFVTSVG
        YQ GA SVKC +CNFVTSVG
Subjt:  YQCGAHSVKCTLCNFVTSVG

Arabidopsis top hitse value%identityAlignment
AT1G32540.1 lsd one like 11.3e-4572.03Show/hide
Query:  FPPATCCQSQIVCSGCKNLLIYPAGATSICCALCHAVSPVPTSGIAMARLVCRGCHTLLMYSRGATSVQCSCCRTVNSASKANQTAHINCGNCRVLLMYQ
        F  +T  QSQ+VCSGC+NLL+YP GATS+CCA+C+AV+ VP  G  MA+LVC GCHTLLMY RGATSVQCSCC TVN A +ANQ AH+NCGNC +LLMYQ
Subjt:  FPPATCCQSQIVCSGCKNLLIYPAGATSICCALCHAVSPVPTSGIAMARLVCRGCHTLLMYSRGATSVQCSCCRTVNSASKANQTAHINCGNCRVLLMYQ

Query:  CGAHSVKCTLCNFVTSVG
         GA SVKC +CNFVTSVG
Subjt:  CGAHSVKCTLCNFVTSVG

AT1G32540.2 lsd one like 11.3e-4572.5Show/hide
Query:  PPA---TCCQSQIVCSGCKNLLIYPAGATSICCALCHAVSPVPTSGIAMARLVCRGCHTLLMYSRGATSVQCSCCRTVNSASKANQTAHINCGNCRVLLM
        PPA   T  QSQ+VCSGC+NLL+YP GATS+CCA+C+AV+ VP  G  MA+LVC GCHTLLMY RGATSVQCSCC TVN A +ANQ AH+NCGNC +LLM
Subjt:  PPA---TCCQSQIVCSGCKNLLIYPAGATSICCALCHAVSPVPTSGIAMARLVCRGCHTLLMYSRGATSVQCSCCRTVNSASKANQTAHINCGNCRVLLM

Query:  YQCGAHSVKCTLCNFVTSVG
        YQ GA SVKC +CNFVTSVG
Subjt:  YQCGAHSVKCTLCNFVTSVG

AT1G32540.3 lsd one like 11.3e-4572.5Show/hide
Query:  PPA---TCCQSQIVCSGCKNLLIYPAGATSICCALCHAVSPVPTSGIAMARLVCRGCHTLLMYSRGATSVQCSCCRTVNSASKANQTAHINCGNCRVLLM
        PPA   T  QSQ+VCSGC+NLL+YP GATS+CCA+C+AV+ VP  G  MA+LVC GCHTLLMY RGATSVQCSCC TVN A +ANQ AH+NCGNC +LLM
Subjt:  PPA---TCCQSQIVCSGCKNLLIYPAGATSICCALCHAVSPVPTSGIAMARLVCRGCHTLLMYSRGATSVQCSCCRTVNSASKANQTAHINCGNCRVLLM

Query:  YQCGAHSVKCTLCNFVTSVG
        YQ GA SVKC +CNFVTSVG
Subjt:  YQCGAHSVKCTLCNFVTSVG

AT4G20380.1 LSD1 zinc finger family protein2.9e-2952.07Show/hide
Query:  QSQIVCSGCKNLLIYPAGATSICCALCHAVS--PVPTSGIAMARLVCRGCHTLLMYSRGATSVQCSCCRTVNSA-SKANQTAH--------INCGNCRVL
        Q Q+VC GC+NLL+YP GA+++ CALC+ ++  P P     MA ++C GC T+LMY+RGA+SV+CSCC+T N   + +NQ AH        INCG+CR  
Subjt:  QSQIVCSGCKNLLIYPAGATSICCALCHAVS--PVPTSGIAMARLVCRGCHTLLMYSRGATSVQCSCCRTVNSA-SKANQTAH--------INCGNCRVL

Query:  LMYQCGAHSVKCTLCNFVTSV
        LMY  GA SVKC +C FVT+V
Subjt:  LMYQCGAHSVKCTLCNFVTSV

AT4G20380.2 LSD1 zinc finger family protein2.9e-2952.07Show/hide
Query:  QSQIVCSGCKNLLIYPAGATSICCALCHAVS--PVPTSGIAMARLVCRGCHTLLMYSRGATSVQCSCCRTVNSA-SKANQTAH--------INCGNCRVL
        Q Q+VC GC+NLL+YP GA+++ CALC+ ++  P P     MA ++C GC T+LMY+RGA+SV+CSCC+T N   + +NQ AH        INCG+CR  
Subjt:  QSQIVCSGCKNLLIYPAGATSICCALCHAVS--PVPTSGIAMARLVCRGCHTLLMYSRGATSVQCSCCRTVNSA-SKANQTAH--------INCGNCRVL

Query:  LMYQCGAHSVKCTLCNFVTSV
        LMY  GA SVKC +C FVT+V
Subjt:  LMYQCGAHSVKCTLCNFVTSV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCATTTCCTCCAGCTACTTGTTGTCAAAGCCAAATAGTGTGCTCCGGATGTAAAAATCTGTTGATCTATCCTGCTGGAGCAACGTCCATTTGCTGTGCTCTTTGCCA
TGCTGTATCCCCTGTGCCAACCTCTGGCATAGCAATGGCTCGGCTGGTGTGTAGAGGCTGCCACACTCTGCTCATGTACAGTCGTGGGGCAACAAGTGTACAATGTTCTT
GTTGTCGCACTGTCAATTCAGCCTCCAAAGCAAATCAGACGGCTCATATCAACTGTGGGAACTGTAGGGTACTGCTGATGTACCAATGTGGAGCCCACTCTGTCAAATGT
ACACTTTGCAATTTTGTGACCTCAGTTGGTTGGGACTCGAAGGTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCATTTCCTCCAGCTACTTGTTGTCAAAGCCAAATAGTGTGCTCCGGATGTAAAAATCTGTTGATCTATCCTGCTGGAGCAACGTCCATTTGCTGTGCTCTTTGCCA
TGCTGTATCCCCTGTGCCAACCTCTGGCATAGCAATGGCTCGGCTGGTGTGTAGAGGCTGCCACACTCTGCTCATGTACAGTCGTGGGGCAACAAGTGTACAATGTTCTT
GTTGTCGCACTGTCAATTCAGCCTCCAAAGCAAATCAGACGGCTCATATCAACTGTGGGAACTGTAGGGTACTGCTGATGTACCAATGTGGAGCCCACTCTGTCAAATGT
ACACTTTGCAATTTTGTGACCTCAGTTGGTTGGGACTCGAAGGTCTGA
Protein sequenceShow/hide protein sequence
MPFPPATCCQSQIVCSGCKNLLIYPAGATSICCALCHAVSPVPTSGIAMARLVCRGCHTLLMYSRGATSVQCSCCRTVNSASKANQTAHINCGNCRVLLMYQCGAHSVKC
TLCNFVTSVGWDSKV