; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg021236 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg021236
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRING-type domain-containing protein
Genome locationscaffold6:48030585..48031082
RNA-Seq ExpressionSpg021236
SyntenySpg021236
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052944.1 E3 ubiquitin-protein ligase RNF13 [Cucumis melo var. makuwa]1.5e-2363.11Show/hide
Query:  MVFNKVFFFFYNNFVGVRDRP-RLKQATPSPRGGDSSLRLRVKEESVALDDC--VALASPGKALQGERCCVCLSSMGR---DGEEGI--ETSVLPCFHEF
        MVFNKVFFFFYNNF+G R RP R KQATP P GG+SSLR       +  DDC  +AL+S  KAL+GE CCVCLSSMG    DG++G+   TSVLPC HEF
Subjt:  MVFNKVFFFFYNNFVGVRDRP-RLKQATPSPRGGDSSLRLRVKEESVALDDC--VALASPGKALQGERCCVCLSSMGR---DGEEGI--ETSVLPCFHEF

Query:  HKI
        HK+
Subjt:  HKI

KAG6577791.1 Protein goliath, partial [Cucurbita argyrosperma subsp. sororia]7.7e-2567.01Show/hide
Query:  MVFNKVFFFFYNNFVGVRDRPRLKQATPSPRGGDSSLRLRVKEESVALDDCV-ALASPGKALQGERCCVCLSSMG-RDGEEGIETSVLPCFHEFHKI
        MVFNK+FFFFYNN +G R  P LKQATP PR  DSSLR       +  DDCV AL+SP KAL+GE CCVCLS MG +D +EGI TSVLPC HEFHKI
Subjt:  MVFNKVFFFFYNNFVGVRDRPRLKQATPSPRGGDSSLRLRVKEESVALDDCV-ALASPGKALQGERCCVCLSSMG-RDGEEGIETSVLPCFHEFHKI

KAG7015830.1 Protein goliath, partial [Cucurbita argyrosperma subsp. argyrosperma]1.0e-2467.01Show/hide
Query:  MVFNKVFFFFYNNFVGVRDRPRLKQATPSPRGGDSSLRLRVKEESVALDDCV-ALASPGKALQGERCCVCLSSMG-RDGEEGIETSVLPCFHEFHKI
        MVFNK+FFFFYNN +G R  P LKQATP PR  DSSLR          DDCV AL+SP KAL+GE CCVCLS MG +D +EGI TSVLPC HEFHKI
Subjt:  MVFNKVFFFFYNNFVGVRDRPRLKQATPSPRGGDSSLRLRVKEESVALDDCV-ALASPGKALQGERCCVCLSSMG-RDGEEGIETSVLPCFHEFHKI

XP_022145297.1 E3 ubiquitin-protein ligase SDIR1-like [Momordica charantia]5.0e-2466.67Show/hide
Query:  MVFNKVFFFFYNNFVGVRDRPRLKQATPSPRGGDSSLRLRVKEESVALDDCVALASPGKALQGER-CCVCLSSMGRDGEEGIETSVLPCFHEFHKI
        MVFN+VFFFFY NF+G R RP+LKQ T  P GGDS+LR  V++ES  + DCV L+S GKAL+GE  CCVCLSS+    EEGIETSVLPC HEFHK+
Subjt:  MVFNKVFFFFYNNFVGVRDRPRLKQATPSPRGGDSSLRLRVKEESVALDDCVALASPGKALQGER-CCVCLSSMGRDGEEGIETSVLPCFHEFHKI

XP_038906276.1 E3 ubiquitin-protein ligase RNF167-like [Benincasa hispida]1.5e-2362.75Show/hide
Query:  MVFNKVFFFFYNNFVGVRDRPRLKQATPSPRGGDSSLRLRVKEESVALDDC--VALASPGKALQGERCCVCLSSMG-----RDGEEGIETSVLPCFHEFH
        MVFNKVFFFFYNNF+G R R R KQATP P GG+ SLR       +  DDC  V L+SP KAL+GE CCVCLSSMG     RD   G  TSVLPC HEFH
Subjt:  MVFNKVFFFFYNNFVGVRDRPRLKQATPSPRGGDSSLRLRVKEESVALDDC--VALASPGKALQGERCCVCLSSMG-----RDGEEGIETSVLPCFHEFH

Query:  KI
        K+
Subjt:  KI

TrEMBL top hitse value%identityAlignment
A0A0A0L4W7 RING-type domain-containing protein3.4e-2664Show/hide
Query:  MVFNKVFFFFYNNFVGVRDRPRLKQATPSPRGGDSSLRLRVKEESVALDDC--VALASPGKALQGERCCVCLSSMG---RDGEEGIETSVLPCFHEFHKI
        M+FNKVFFFFYNN +G R RPR KQATP PR G+SSLR       +  DDC  +AL+S  KAL+GE CCVCLSSMG   RDG++G+ TSVLPC HEFHK+
Subjt:  MVFNKVFFFFYNNFVGVRDRPRLKQATPSPRGGDSSLRLRVKEESVALDDC--VALASPGKALQGERCCVCLSSMG---RDGEEGIETSVLPCFHEFHKI

A0A5D3CJ45 E3 ubiquitin-protein ligase RNF137.0e-2463.11Show/hide
Query:  MVFNKVFFFFYNNFVGVRDRP-RLKQATPSPRGGDSSLRLRVKEESVALDDC--VALASPGKALQGERCCVCLSSMGR---DGEEGI--ETSVLPCFHEF
        MVFNKVFFFFYNNF+G R RP R KQATP P GG+SSLR       +  DDC  +AL+S  KAL+GE CCVCLSSMG    DG++G+   TSVLPC HEF
Subjt:  MVFNKVFFFFYNNFVGVRDRP-RLKQATPSPRGGDSSLRLRVKEESVALDDC--VALASPGKALQGERCCVCLSSMGR---DGEEGI--ETSVLPCFHEF

Query:  HKI
        HK+
Subjt:  HKI

A0A6J1CW69 E3 ubiquitin-protein ligase SDIR1-like2.4e-2466.67Show/hide
Query:  MVFNKVFFFFYNNFVGVRDRPRLKQATPSPRGGDSSLRLRVKEESVALDDCVALASPGKALQGER-CCVCLSSMGRDGEEGIETSVLPCFHEFHKI
        MVFN+VFFFFY NF+G R RP+LKQ T  P GGDS+LR  V++ES  + DCV L+S GKAL+GE  CCVCLSS+    EEGIETSVLPC HEFHK+
Subjt:  MVFNKVFFFFYNNFVGVRDRPRLKQATPSPRGGDSSLRLRVKEESVALDDCVALASPGKALQGER-CCVCLSSMGRDGEEGIETSVLPCFHEFHKI

A0A803PEM7 Uncharacterized protein2.1e-0740.43Show/hide
Query:  MVFNKVFFFFYNNFVGVRDRPRLKQATPSPRGGDSSLRLRVKEESVALDDCVALASPGKALQGERCCVCLSSMGRDGEEGIETSVLPCFHEFHK
        MVFN +    YNNF+ ++ +PR+K+   S    + ++  +V E   AL +    +  G   +GE CCVCLS +     EG ETS+LPC HEFHK
Subjt:  MVFNKVFFFFYNNFVGVRDRPRLKQATPSPRGGDSSLRLRVKEESVALDDCVALASPGKALQGERCCVCLSSMGRDGEEGIETSVLPCFHEFHK

W9SMW3 E3 ubiquitin-protein ligase Arkadia9.2e-0843.62Show/hide
Query:  MVFNKVFFFFYNNFVGVRDRPRLKQATPSPRGGDSSLRLRVKEESVALDDCVALASPGKALQGERCCVCLSSMGRDGEEGIETSVLPCFHEFHK
        MV NK F     NF+ ++ +PRLK+A  S    + ++ L+++E    LD+  A +S G   +GE CCVCLS++    EEG ETS+LPC H+FHK
Subjt:  MVFNKVFFFFYNNFVGVRDRPRLKQATPSPRGGDSSLRLRVKEESVALDDCVALASPGKALQGERCCVCLSSMGRDGEEGIETSVLPCFHEFHK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTTCAACAAGGTCTTCTTCTTCTTCTACAACAACTTCGTCGGTGTCCGAGACAGACCGAGGCTCAAGCAGGCAACCCCGTCTCCTCGCGGTGGCGATTCGAGCCT
TCGACTGAGGGTGAAGGAGGAGTCTGTGGCACTTGATGATTGTGTAGCTCTTGCGAGTCCTGGAAAGGCGTTGCAGGGCGAGAGATGTTGCGTGTGCTTGTCGAGTATGG
GTCGGGATGGGGAGGAGGGGATTGAAACGAGTGTTCTTCCTTGCTTCCACGAGTTTCATAAGATCCTCCAAAAGCACTTCAAGCTTGGCAGTGCTTCCTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTTTCAACAAGGTCTTCTTCTTCTTCTACAACAACTTCGTCGGTGTCCGAGACAGACCGAGGCTCAAGCAGGCAACCCCGTCTCCTCGCGGTGGCGATTCGAGCCT
TCGACTGAGGGTGAAGGAGGAGTCTGTGGCACTTGATGATTGTGTAGCTCTTGCGAGTCCTGGAAAGGCGTTGCAGGGCGAGAGATGTTGCGTGTGCTTGTCGAGTATGG
GTCGGGATGGGGAGGAGGGGATTGAAACGAGTGTTCTTCCTTGCTTCCACGAGTTTCATAAGATCCTCCAAAAGCACTTCAAGCTTGGCAGTGCTTCCTTTTGA
Protein sequenceShow/hide protein sequence
MVFNKVFFFFYNNFVGVRDRPRLKQATPSPRGGDSSLRLRVKEESVALDDCVALASPGKALQGERCCVCLSSMGRDGEEGIETSVLPCFHEFHKILQKHFKLGSASF