CuGenDBv2

Gene ID	Spg021322
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	DNA-directed RNA polymerase II subunit RPB1-like
Genome location	scaffold6:48092620..48093791
RNA-Seq Expression	Spg021322
Synteny	Spg021322
Gene Ontology terms	NA
InterPro domains	IPR011057 - Mss4-like superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004146165.1 uncharacterized protein At4g08330, chloroplastic [Cucumis sativus]

1.7e-52

91.43

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Query:  MASIYSCTECGANLKLNSTHLFPPDFYFEAGNKGTLSFSLIDSTKFRFEKEDKLRPFFETVNYWGIQRKRTKIKCNACGRLVGYVYDDGPPLTDSPGQYH
        MASIYSCTECG NL LNSTHLFPPDFYFEAGNKGTLSFS IDSTKFR EKEDKLRPFFET+NYWGIQRKRTK+KCN+CG LVGYVYDDGPPLTDSPGQ+H
Subjt:  MASIYSCTECGANLKLNSTHLFPPDFYFEAGNKGTLSFSLIDSTKFRFEKEDKLRPFFETVNYWGIQRKRTKIKCNACGRLVGYVYDDGPPLTDSPGQYH

Query:  FGPSQ
        FGPSQ
Subjt:  FGPSQ

XP_022923554.1 uncharacterized protein LOC111431209 [Cucurbita moschata]

3.8e-52

92.38

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Query:  MASIYSCTECGANLKLNSTHLFPPDFYFEAGNKGTLSFSLIDSTKFRFEKEDKLRPFFETVNYWGIQRKRTKIKCNACGRLVGYVYDDGPPLTDSPGQYH
        MASIY C ECGANL LNS+HLFPPDFYFEAGNKGTLSFSLIDSTKFR EKEDKLRPFFETVNYWGIQR RTKIKCN+C RLVGYVYDDGPPLTDSPGQYH
Subjt:  MASIYSCTECGANLKLNSTHLFPPDFYFEAGNKGTLSFSLIDSTKFRFEKEDKLRPFFETVNYWGIQRKRTKIKCNACGRLVGYVYDDGPPLTDSPGQYH

Query:  FGPSQ
        FGPSQ
Subjt:  FGPSQ

XP_022965337.1 uncharacterized protein LOC111465232 isoform X2 [Cucurbita maxima]

2.6e-53

94.29

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Query:  MASIYSCTECGANLKLNSTHLFPPDFYFEAGNKGTLSFSLIDSTKFRFEKEDKLRPFFETVNYWGIQRKRTKIKCNACGRLVGYVYDDGPPLTDSPGQYH
        MASIYSC ECGANL LNS+HLFPPDFYFEAGNKGTLSFSLIDSTKFR EKEDKLRPFFETVNYWGIQRKRTKIKCN+C RLVGYVYDDGPPLTDSPGQYH
Subjt:  MASIYSCTECGANLKLNSTHLFPPDFYFEAGNKGTLSFSLIDSTKFRFEKEDKLRPFFETVNYWGIQRKRTKIKCNACGRLVGYVYDDGPPLTDSPGQYH

Query:  FGPSQ
        FGPSQ
Subjt:  FGPSQ

XP_023551931.1 uncharacterized protein LOC111809759 isoform X2 [Cucurbita pepo subsp. pepo]

2.9e-52

92.38

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Query:  MASIYSCTECGANLKLNSTHLFPPDFYFEAGNKGTLSFSLIDSTKFRFEKEDKLRPFFETVNYWGIQRKRTKIKCNACGRLVGYVYDDGPPLTDSPGQYH
        MASIY C ECGANL LNS+HLFPPDFYFEAGNKGTLSFSLIDSTKFR EKEDKLRPFFETVNYWGIQRKRTKIKCN+C RLVGYVYDDGPPLT+SPGQYH
Subjt:  MASIYSCTECGANLKLNSTHLFPPDFYFEAGNKGTLSFSLIDSTKFRFEKEDKLRPFFETVNYWGIQRKRTKIKCNACGRLVGYVYDDGPPLTDSPGQYH

Query:  FGPSQ
        FGPSQ
Subjt:  FGPSQ

XP_038903300.1 uncharacterized protein LOC120089928 [Benincasa hispida]

8.4e-52

90.48

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Query:  MASIYSCTECGANLKLNSTHLFPPDFYFEAGNKGTLSFSLIDSTKFRFEKEDKLRPFFETVNYWGIQRKRTKIKCNACGRLVGYVYDDGPPLTDSPGQYH
        MASIYSC ECG NL LNS+HLFPPDFYFEAGNKGTLSFS IDSTKFR EKEDKLRPFFETVNYWGIQRKRTK+KCN+CG LVGY+YDDGPPLTDSPGQYH
Subjt:  MASIYSCTECGANLKLNSTHLFPPDFYFEAGNKGTLSFSLIDSTKFRFEKEDKLRPFFETVNYWGIQRKRTKIKCNACGRLVGYVYDDGPPLTDSPGQYH

Query:  FGPSQ
        FGPSQ
Subjt:  FGPSQ

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L4W0 Uncharacterized protein

8.2e-53

91.43

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Query:  MASIYSCTECGANLKLNSTHLFPPDFYFEAGNKGTLSFSLIDSTKFRFEKEDKLRPFFETVNYWGIQRKRTKIKCNACGRLVGYVYDDGPPLTDSPGQYH
        MASIYSCTECG NL LNSTHLFPPDFYFEAGNKGTLSFS IDSTKFR EKEDKLRPFFET+NYWGIQRKRTK+KCN+CG LVGYVYDDGPPLTDSPGQ+H
Subjt:  MASIYSCTECGANLKLNSTHLFPPDFYFEAGNKGTLSFSLIDSTKFRFEKEDKLRPFFETVNYWGIQRKRTKIKCNACGRLVGYVYDDGPPLTDSPGQYH

Query:  FGPSQ
        FGPSQ
Subjt:  FGPSQ

A0A1S3BJW2 uncharacterized protein LOC103490667

4.5e-51

87.62

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Query:  MASIYSCTECGANLKLNSTHLFPPDFYFEAGNKGTLSFSLIDSTKFRFEKEDKLRPFFETVNYWGIQRKRTKIKCNACGRLVGYVYDDGPPLTDSPGQYH
        MASIYSC+ECG NL LNS+HLFPPDFYFEAGNKGTLSFS IDSTKFR EKEDKLRPFFET+NYWGIQRKRTK+KC +CG LVGY+YDDGPPLTDSPGQ+H
Subjt:  MASIYSCTECGANLKLNSTHLFPPDFYFEAGNKGTLSFSLIDSTKFRFEKEDKLRPFFETVNYWGIQRKRTKIKCNACGRLVGYVYDDGPPLTDSPGQYH

Query:  FGPSQ
        FGPSQ
Subjt:  FGPSQ

A0A2I4HBZ1 uncharacterized protein LOC109015663

7.7e-51

87.62

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Query:  MASIYSCTECGANLKLNSTHLFPPDFYFEAGNKGTLSFSLIDSTKFRFEKEDKLRPFFETVNYWGIQRKRTKIKCNACGRLVGYVYDDGPPLTDSPGQYH
        MASIYSCTECG NL L + HLFPPDFYFEAGNKGTLSFS +D +KFRFEKEDK+RPFFETVNYWGIQRKRTKIKCN+CGRLVGYVYDDGPPLTDSPGQ+H
Subjt:  MASIYSCTECGANLKLNSTHLFPPDFYFEAGNKGTLSFSLIDSTKFRFEKEDKLRPFFETVNYWGIQRKRTKIKCNACGRLVGYVYDDGPPLTDSPGQYH

Query:  FGPSQ
         GPSQ
Subjt:  FGPSQ

A0A6J1E6R2 uncharacterized protein LOC111431209

1.8e-52

92.38

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Query:  MASIYSCTECGANLKLNSTHLFPPDFYFEAGNKGTLSFSLIDSTKFRFEKEDKLRPFFETVNYWGIQRKRTKIKCNACGRLVGYVYDDGPPLTDSPGQYH
        MASIY C ECGANL LNS+HLFPPDFYFEAGNKGTLSFSLIDSTKFR EKEDKLRPFFETVNYWGIQR RTKIKCN+C RLVGYVYDDGPPLTDSPGQYH
Subjt:  MASIYSCTECGANLKLNSTHLFPPDFYFEAGNKGTLSFSLIDSTKFRFEKEDKLRPFFETVNYWGIQRKRTKIKCNACGRLVGYVYDDGPPLTDSPGQYH

Query:  FGPSQ
        FGPSQ
Subjt:  FGPSQ

A0A6J1HK24 uncharacterized protein LOC111465232 isoform X2

1.3e-53

94.29

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Query:  MASIYSCTECGANLKLNSTHLFPPDFYFEAGNKGTLSFSLIDSTKFRFEKEDKLRPFFETVNYWGIQRKRTKIKCNACGRLVGYVYDDGPPLTDSPGQYH
        MASIYSC ECGANL LNS+HLFPPDFYFEAGNKGTLSFSLIDSTKFR EKEDKLRPFFETVNYWGIQRKRTKIKCN+C RLVGYVYDDGPPLTDSPGQYH
Subjt:  MASIYSCTECGANLKLNSTHLFPPDFYFEAGNKGTLSFSLIDSTKFRFEKEDKLRPFFETVNYWGIQRKRTKIKCNACGRLVGYVYDDGPPLTDSPGQYH

Query:  FGPSQ
        FGPSQ
Subjt:  FGPSQ

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G17705.1 unknown protein

3.7e-45

73.08

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Query:  ASIYSCTECGANLKLNSTHLFPPDFYFEAGNKGTLSFSLIDSTKFRFEKEDKLRPFFETVNYWGIQRKRTKIKCNACGRLVGYVYDDGPPLTDSPGQYHF
        ++IY+C ECG++L LN   LFPPDFYFEAGNKGTLSF+ +D+ KFRFEKEDK+ PFFET+NYWGIQRKRTKIKC +C  L+GY+YDDGPPLT   GQY F
Subjt:  ASIYSCTECGANLKLNSTHLFPPDFYFEAGNKGTLSFSLIDSTKFRFEKEDKLRPFFETVNYWGIQRKRTKIKCNACGRLVGYVYDDGPPLTDSPGQYHF

Query:  GPSQ
        GPSQ
Subjt:  GPSQ

Sequences

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CDS sequence

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ATGGCTTCCATCTATTCCTGTACTGAATGCGGAGCAAATCTGAAACTGAATTCCACTCATCTCTTCCCGCCGGATTTCTACTTCGAGGCCGGCAACAAGGGCACCCTTTC
GTTTTCGTTGATCGACTCCACGAAATTCAGGTTCGAGAAGGAGGACAAGCTCCGACCGTTCTTCGAGACCGTCAACTATTGGGGAATCCAGCGGAAACGCACCAAGATCA
AGTGCAATGCATGTGGACGTCTCGTCGGCTACGTTTACGACGATGGGCCTCCTCTTACCGATAGTCCAGGTCAGTACCATTTCGGACCTAGCCAGAGTGGAAAAGATTCA
TTTATCAATGGCAAGAAGGATGCAGTCCAAGTGAAAGGGGAGGGTTGCTCTTATTGCTTCTGGAAACTGGAGAGGGAAGGTATTGATGGGTTGGTCACTTGTCTTCTTCC
CCGTTTTATCAGCCCTTTCAATCCTTTAACGTACACATAA

mRNA sequence

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Protein sequence

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MASIYSCTECGANLKLNSTHLFPPDFYFEAGNKGTLSFSLIDSTKFRFEKEDKLRPFFETVNYWGIQRKRTKIKCNACGRLVGYVYDDGPPLTDSPGQYHFGPSQSGKDS
FINGKKDAVQVKGEGCSYCFWKLEREGIDGLVTCLLPRFISPFNPLTYT

Spg021322 (gene) of Sponge gourd (cylindrica) v1 genome