; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg021333 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg021333
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptiontranslation initiation factor IF-1, chloroplastic-like
Genome locationscaffold6:45190730..45191239
RNA-Seq ExpressionSpg021333
SyntenySpg021333
Gene Ontology termsGO:0006413 - translational initiation (biological process)
GO:0005829 - cytosol (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0003743 - translation initiation factor activity (molecular function)
GO:0043022 - ribosome binding (molecular function)
InterPro domainsIPR004368 - Translation initiation factor IF-1
IPR006196 - RNA-binding domain, S1, IF1 type
IPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064332.1 translation initiation factor IF-1 [Cucumis melo var. makuwa]4.5e-3160.96Show/hide
Query:  SNSLSFNSTPSHRPFSFFRPSNRISPSSQSFLRALNSSITLPVVR---------QGSLTLAKSPKSDSSEHKWSHEGSVVESLPNGMFRVLLDNKDLILG
        +N L F    SH    F  PS  + P  +S L  +  SI+ P  +          G   +AKSPK+D+SE K SHEGSVVESLPNGMFRV LDN+DLILG
Subjt:  SNSLSFNSTPSHRPFSFFRPSNRISPSSQSFLRALNSSITLPVVR---------QGSLTLAKSPKSDSSEHKWSHEGSVVESLPNGMFRVLLDNKDLILG

Query:  YISGKIKKNFVCILHGDRVRVEVSHYDSTKGRIVYRLRNSTKDSSS
        YISGKI+KNFV IL GDRVRVEVS YDSTKGRIVYRLR+S KDSSS
Subjt:  YISGKIKKNFVCILHGDRVRVEVSHYDSTKGRIVYRLRNSTKDSSS

XP_011654076.1 uncharacterized protein LOC101206284 [Cucumis sativus]8.4e-3060.27Show/hide
Query:  SNSLSFNSTPSHRPFSFFRPSNRISPSSQSFLRALNSSITLPV---------VRQGSLTLAKSPKSDSSEHKWSHEGSVVESLPNGMFRVLLDNKDLILG
        +N L F    SH    F  PS  + P+ +S L    +SI+ P               + +AKSPK+D+SE K SHEGSVVESLPNGMFRV LDN+DLILG
Subjt:  SNSLSFNSTPSHRPFSFFRPSNRISPSSQSFLRALNSSITLPV---------VRQGSLTLAKSPKSDSSEHKWSHEGSVVESLPNGMFRVLLDNKDLILG

Query:  YISGKIKKNFVCILHGDRVRVEVSHYDSTKGRIVYRLRNSTKDSSS
        YISGKI+KNFV IL GDRVRVEVS YDSTKGRIVYR+R STKDSSS
Subjt:  YISGKIKKNFVCILHGDRVRVEVSHYDSTKGRIVYRLRNSTKDSSS

XP_022139601.1 uncharacterized protein LOC111010461 [Momordica charantia]1.6e-3370.59Show/hide
Query:  PSNRISPSSQSFLRALNSSITLPVVRQGSL-TLAKSPKSDSSEHKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGKIKKNFVCILHGDRVRVEVSHYD
        PS R  PS  S     ++ + +P      L  +AKSPKSDSSE KWSHEGSV ESLPNGMFRV LDN+DLILGYISGKI+KNFV IL GDRVR+EVS YD
Subjt:  PSNRISPSSQSFLRALNSSITLPVVRQGSL-TLAKSPKSDSSEHKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGKIKKNFVCILHGDRVRVEVSHYD

Query:  STKGRIVYRLRNSTKDSSS
        STKGRIVYRLR+STKDSSS
Subjt:  STKGRIVYRLRNSTKDSSS

XP_022940969.1 translation initiation factor IF-1, chloroplastic-like [Cucurbita moschata]1.9e-2983.91Show/hide
Query:  LAKSPKSDSSEHKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGKIKKNFVCILHGDRVRVEVSHYDSTKGRIVYRLRNSTKDSSS
        +AKSPKS+SSE K+SHEGSV+ESLPNGMFRV LDN+DLILGYISGKI+KNFV IL GDRVRVEVS YDSTKGRIVYR R STKD SS
Subjt:  LAKSPKSDSSEHKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGKIKKNFVCILHGDRVRVEVSHYDSTKGRIVYRLRNSTKDSSS

XP_038899010.1 translation initiation factor IF-1, chloroplastic [Benincasa hispida]5.6e-3463.64Show/hide
Query:  LSFNSTPSHRPFSFFRPSNRISPSSQSFLRALNSSITLPVVR---------QGSLTLAKSPKSDSSEHKWSHEGSVVESLPNGMFRVLLDNKDLILGYIS
        L F    SH    F  PS    P+ +S L  +  SIT P  +          G + +AKSPK+D+SE KWSHEGSVVESLPNGMFRV LDN+DLILGYIS
Subjt:  LSFNSTPSHRPFSFFRPSNRISPSSQSFLRALNSSITLPVVR---------QGSLTLAKSPKSDSSEHKWSHEGSVVESLPNGMFRVLLDNKDLILGYIS

Query:  GKIKKNFVCILHGDRVRVEVSHYDSTKGRIVYRLRNSTKDSSS
        GKI+KNFV IL GDRVRVEVS YDSTKGRIVYRLR+STKDSSS
Subjt:  GKIKKNFVCILHGDRVRVEVSHYDSTKGRIVYRLRNSTKDSSS

TrEMBL top hitse value%identityAlignment
A0A0A0L4Q7 S1-like domain-containing protein4.1e-3060.27Show/hide
Query:  SNSLSFNSTPSHRPFSFFRPSNRISPSSQSFLRALNSSITLPV---------VRQGSLTLAKSPKSDSSEHKWSHEGSVVESLPNGMFRVLLDNKDLILG
        +N L F    SH    F  PS  + P+ +S L    +SI+ P               + +AKSPK+D+SE K SHEGSVVESLPNGMFRV LDN+DLILG
Subjt:  SNSLSFNSTPSHRPFSFFRPSNRISPSSQSFLRALNSSITLPV---------VRQGSLTLAKSPKSDSSEHKWSHEGSVVESLPNGMFRVLLDNKDLILG

Query:  YISGKIKKNFVCILHGDRVRVEVSHYDSTKGRIVYRLRNSTKDSSS
        YISGKI+KNFV IL GDRVRVEVS YDSTKGRIVYR+R STKDSSS
Subjt:  YISGKIKKNFVCILHGDRVRVEVSHYDSTKGRIVYRLRNSTKDSSS

A0A5A7V7J3 Translation initiation factor IF-12.2e-3160.96Show/hide
Query:  SNSLSFNSTPSHRPFSFFRPSNRISPSSQSFLRALNSSITLPVVR---------QGSLTLAKSPKSDSSEHKWSHEGSVVESLPNGMFRVLLDNKDLILG
        +N L F    SH    F  PS  + P  +S L  +  SI+ P  +          G   +AKSPK+D+SE K SHEGSVVESLPNGMFRV LDN+DLILG
Subjt:  SNSLSFNSTPSHRPFSFFRPSNRISPSSQSFLRALNSSITLPVVR---------QGSLTLAKSPKSDSSEHKWSHEGSVVESLPNGMFRVLLDNKDLILG

Query:  YISGKIKKNFVCILHGDRVRVEVSHYDSTKGRIVYRLRNSTKDSSS
        YISGKI+KNFV IL GDRVRVEVS YDSTKGRIVYRLR+S KDSSS
Subjt:  YISGKIKKNFVCILHGDRVRVEVSHYDSTKGRIVYRLRNSTKDSSS

A0A6J1CD60 uncharacterized protein LOC1110104618.0e-3470.59Show/hide
Query:  PSNRISPSSQSFLRALNSSITLPVVRQGSL-TLAKSPKSDSSEHKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGKIKKNFVCILHGDRVRVEVSHYD
        PS R  PS  S     ++ + +P      L  +AKSPKSDSSE KWSHEGSV ESLPNGMFRV LDN+DLILGYISGKI+KNFV IL GDRVR+EVS YD
Subjt:  PSNRISPSSQSFLRALNSSITLPVVRQGSL-TLAKSPKSDSSEHKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGKIKKNFVCILHGDRVRVEVSHYD

Query:  STKGRIVYRLRNSTKDSSS
        STKGRIVYRLR+STKDSSS
Subjt:  STKGRIVYRLRNSTKDSSS

A0A6J1FLU6 translation initiation factor IF-1, chloroplastic-like9.1e-3083.91Show/hide
Query:  LAKSPKSDSSEHKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGKIKKNFVCILHGDRVRVEVSHYDSTKGRIVYRLRNSTKDSSS
        +AKSPKS+SSE K+SHEGSV+ESLPNGMFRV LDN+DLILGYISGKI+KNFV IL GDRVRVEVS YDSTKGRIVYR R STKD SS
Subjt:  LAKSPKSDSSEHKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGKIKKNFVCILHGDRVRVEVSHYDSTKGRIVYRLRNSTKDSSS

A0A6J1IW62 translation initiation factor IF-1, chloroplastic-like9.1e-3083.91Show/hide
Query:  LAKSPKSDSSEHKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGKIKKNFVCILHGDRVRVEVSHYDSTKGRIVYRLRNSTKDSSS
        +AKSPKS+SSE K+SHEGSV+ESLPNGMFRV LDN+DLILGYISGKI+KNFV IL GDRVRVEVS YDSTKGRIVYR R STKD SS
Subjt:  LAKSPKSDSSEHKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGKIKKNFVCILHGDRVRVEVSHYDSTKGRIVYRLRNSTKDSSS

SwissProt top hitse value%identityAlignment
A0A370 Translation initiation factor IF-1, chloroplastic1.7e-2572Show/hide
Query:  EHKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGKIKKNFVCILHGDRVRVEVSHYDSTKGRIVYRLRNSTKDS
        E KW+HEG + ESLPNGMFRV LDN+DLILGY+SGKI+++F+ IL GDRV++EVS YDST+GRI+YRLRN  KDS
Subjt:  EHKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGKIKKNFVCILHGDRVRVEVSHYDSTKGRIVYRLRNSTKDS

Q7ICQ5 Translation initiation factor IF-1, chloroplastic3.8e-2572Show/hide
Query:  EHKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGKIKKNFVCILHGDRVRVEVSHYDSTKGRIVYRLRNSTKDS
        E KW HEG + ESLPNGMFRV LDN+DLILGY+SGKI+++F+ IL GDRV++EVS YDST+GRI+YRLRN  KDS
Subjt:  EHKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGKIKKNFVCILHGDRVRVEVSHYDSTKGRIVYRLRNSTKDS

Q94KR7 Translation initiation factor IF-1, chloroplastic5.3e-2770.93Show/hide
Query:  SLTLAKSPKSD-SSEHKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGKIKKNFVCILHGDRVRVEVSHYDSTKGRIVYRLRNST
        +L+ A + K D S E KW HEG ++ESLPNGMFRV LDN+DLILGYISGKI+KN+V IL GDRV+VEV+ YDS+KGRIVYRLR+ST
Subjt:  SLTLAKSPKSD-SSEHKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGKIKKNFVCILHGDRVRVEVSHYDSTKGRIVYRLRNST

Q94KR9 Translation initiation factor IF-1, chloroplastic1.0e-2573.24Show/hide
Query:  SSEHKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGKIKKNFVCILHGDRVRVEVSHYDSTKGRIVYRLR
        S E KW+HEGS+ ESLPNGMFRV LDN D++LGYISGKI+KNF+ +L GDRV++EVS YDS+KGRI+YRLR
Subjt:  SSEHKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGKIKKNFVCILHGDRVRVEVSHYDSTKGRIVYRLR

Q94PL3 Translation initiation factor IF-1, chloroplastic3.8e-2572Show/hide
Query:  EHKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGKIKKNFVCILHGDRVRVEVSHYDSTKGRIVYRLRNSTKDS
        E KW HEG + ESLPNGMFRV LDN+DLILGY+SGKI+++F+ IL GDRV++EVS YDST+GRI+YRLRN  KDS
Subjt:  EHKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGKIKKNFVCILHGDRVRVEVSHYDSTKGRIVYRLRNSTKDS

Arabidopsis top hitse value%identityAlignment
AT4G11175.1 Nucleic acid-binding, OB-fold-like protein1.4e-1962.16Show/hide
Query:  PKSDSSEHKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGKIKKNFVCILHGDRVRVEVSHYDSTKGRIVYRL
        P+     +K   EG V ESLPNGMFRV L+N D ILGYI GKI+KNF+ IL GD+V+VE+S YDSTKGRI++R+
Subjt:  PKSDSSEHKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGKIKKNFVCILHGDRVRVEVSHYDSTKGRIVYRL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATGGAGGTGGGAATGCAAACAGAACCGTCTCCAATTCCCTCTCCTTCAATTCCACGCCCAGCCACCGTCCATTCTCCTTTTTCCGGCCATCAAATCGCATCTCTCC
GTCGTCTCAATCCTTTCTCCGAGCTCTCAATTCCTCCATAACCCTTCCAGTGGTCCGGCAAGGTTCGCTCACATTGGCCAAGTCTCCAAAAAGCGATAGCTCGGAGCATA
AATGGAGCCATGAAGGTTCAGTCGTGGAGTCTCTTCCCAATGGGATGTTCAGAGTTCTATTGGATAATAAAGACCTCATTCTTGGCTACATATCGGGTAAGATTAAGAAG
AATTTTGTGTGTATTTTGCATGGTGATAGGGTCAGGGTTGAAGTTAGCCATTATGATTCTACCAAAGGTCGTATTGTTTATAGACTTCGAAACAGTACTAAGGATTCATC
TTCATGA
mRNA sequenceShow/hide mRNA sequence
ATGCATGGAGGTGGGAATGCAAACAGAACCGTCTCCAATTCCCTCTCCTTCAATTCCACGCCCAGCCACCGTCCATTCTCCTTTTTCCGGCCATCAAATCGCATCTCTCC
GTCGTCTCAATCCTTTCTCCGAGCTCTCAATTCCTCCATAACCCTTCCAGTGGTCCGGCAAGGTTCGCTCACATTGGCCAAGTCTCCAAAAAGCGATAGCTCGGAGCATA
AATGGAGCCATGAAGGTTCAGTCGTGGAGTCTCTTCCCAATGGGATGTTCAGAGTTCTATTGGATAATAAAGACCTCATTCTTGGCTACATATCGGGTAAGATTAAGAAG
AATTTTGTGTGTATTTTGCATGGTGATAGGGTCAGGGTTGAAGTTAGCCATTATGATTCTACCAAAGGTCGTATTGTTTATAGACTTCGAAACAGTACTAAGGATTCATC
TTCATGA
Protein sequenceShow/hide protein sequence
MHGGGNANRTVSNSLSFNSTPSHRPFSFFRPSNRISPSSQSFLRALNSSITLPVVRQGSLTLAKSPKSDSSEHKWSHEGSVVESLPNGMFRVLLDNKDLILGYISGKIKK
NFVCILHGDRVRVEVSHYDSTKGRIVYRLRNSTKDSSS