CuGenDBv2

Gene ID	Spg021393
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Ribosomal protein
Genome location	scaffold6:45567504..45571222
RNA-Seq Expression	Spg021393
Synteny	Spg021393
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005737 - cytoplasm (cellular component) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR000529 - Ribosomal protein S6 IPR014717 - Translation elongation factor EF1B/ribosomal protein S6 IPR035980 - Ribosomal protein S6 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6596891.1 hypothetical protein SDJN03_10071, partial [Cucurbita argyrosperma subsp. sororia]

1.9e-66

89.54

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Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTVMATPNMNKELHYLNKEDRLLRWLLVKHRDAK
        MPLYDCMLLMKPHV+KEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRY+QGQLMQMT+MATPNMNKELHYLNKEDRLLRWLLVKHRDAK
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTVMATPNMNKELHYLNKEDRLLRWLLVKHRDAK

Query:  YGLEFLSEDDGKSELNKFPRTDFFGDDDDDKEDD----DDEEYDVEQEERKPE
        YGLEFLSEDDGK ELNKFPR +  GDDD D+EDD    DDEEYDVEQEER  E
Subjt:  YGLEFLSEDDGKSELNKFPRTDFFGDDDDDKEDD----DDEEYDVEQEERKPE

XP_022143220.1 uncharacterized protein LOC111013137 [Momordica charantia]

1.8e-64

88.16

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Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTVMATPNMNKELHYLNKEDRLLRWLLVKHRDAK
        MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGR+YQGQLMQMT+MATPNMNKELHYLNKEDR+LRWLLVKHRD K
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTVMATPNMNKELHYLNKEDRLLRWLLVKHRDAK

Query:  YGLEFLSEDDGKSELNKFPRTDFFGDDDDDKEDDD---DEEYDVEQEERKPE
        YGLEFLSEDD K EL+KFPR    GDDD D+EDDD   DEEYDVEQEE K E
Subjt:  YGLEFLSEDDGKSELNKFPRTDFFGDDDDDKEDDD---DEEYDVEQEERKPE

XP_022936695.1 uncharacterized protein LOC111443208 [Cucurbita moschata]

3.3e-66

88.89

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Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTVMATPNMNKELHYLNKEDRLLRWLLVKHRDAK
        MPLYDCMLLMKPHV+KEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRY+QGQLMQMT+MATPNMNKELHYLNKEDRLLRWLLVKHRD K
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTVMATPNMNKELHYLNKEDRLLRWLLVKHRDAK

Query:  YGLEFLSEDDGKSELNKFPRTDFFGDDD----DDKEDDDDEEYDVEQEERKPE
        YGLEFLSEDDGK+ELNKFPR    GDDD    DD +DDDDEEYDVEQEER  E
Subjt:  YGLEFLSEDDGKSELNKFPRTDFFGDDD----DDKEDDDDEEYDVEQEERKPE

XP_023005590.1 uncharacterized protein LOC111498530 [Cucurbita maxima]

1.1e-64

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Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTVMATPNMNKELHYLNKEDRLLRWLLVKHRDAK
        MPLYDCMLLMKPHV+KEALLDLVARVGKHVFRRNGVVTD+KSFGVVQLGYGIKKLDGRY+QGQLMQMT+MATPNMNKELHYLNKEDRLLRWLLVKHRD K
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTVMATPNMNKELHYLNKEDRLLRWLLVKHRDAK

Query:  YGLEFLSEDDGKSELNKFPRTDFFGDDDDDKEDDDDEEYDVEQE-ERKPE
        YGLEFLSEDDGK+ELNKFPR    GDDD D+EDDDD++ DVEQE ER+ E
Subjt:  YGLEFLSEDDGKSELNKFPRTDFFGDDDDDKEDDDDEEYDVEQE-ERKPE

XP_023539684.1 uncharacterized protein LOC111800294 [Cucurbita pepo subsp. pepo]

6.7e-67

89.54

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Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTVMATPNMNKELHYLNKEDRLLRWLLVKHRDAK
        MPLYDCMLLMKPHV+KEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRY+QGQLMQMT+MATPNMNKELHYLNKEDRLLRWLLVKHRDAK
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTVMATPNMNKELHYLNKEDRLLRWLLVKHRDAK

Query:  YGLEFLSEDDGKSELNKFPRTDFFGDDD----DDKEDDDDEEYDVEQEERKPE
        YGLEFLSEDDGK+ELNKFPR +  GDDD    DD +DDDDEEYDVEQEER  E
Subjt:  YGLEFLSEDDGKSELNKFPRTDFFGDDD----DDKEDDDDEEYDVEQEERKPE

TrEMBL top hits

e value

%identity

Alignment

A0A2N9FW87 Uncharacterized protein

3.8e-60

80.54

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Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTVMATPNMNKELHYLNKEDRLLRWLLVKHRDAK
        MPLYDCMLL+KPHVKKEAL+DLVAR+GKHV+RRNGV+TD+KSFG VQLGYGIKKLDGRYYQGQLMQMT+MATPN+N+ELHYLN EDRLLRWLLVKHR+ K
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTVMATPNMNKELHYLNKEDRLLRWLLVKHRDAK

Query:  YGLEFLSEDDGKSELNKFPRTDFFGDD--DDDKEDDDDEEYDVEQEERK
        YGLEFL+EDDGK EL+KF R+  + D+  D+D +DDDDEEYDV+QEERK
Subjt:  YGLEFLSEDDGKSELNKFPRTDFFGDD--DDDKEDDDDEEYDVEQEERK

A0A6J1CN79 uncharacterized protein LOC111013137

8.8e-65

88.16

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Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTVMATPNMNKELHYLNKEDRLLRWLLVKHRDAK
        MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGR+YQGQLMQMT+MATPNMNKELHYLNKEDR+LRWLLVKHRD K
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTVMATPNMNKELHYLNKEDRLLRWLLVKHRDAK

Query:  YGLEFLSEDDGKSELNKFPRTDFFGDDDDDKEDDD---DEEYDVEQEERKPE
        YGLEFLSEDD K EL+KFPR    GDDD D+EDDD   DEEYDVEQEE K E
Subjt:  YGLEFLSEDDGKSELNKFPRTDFFGDDDDDKEDDD---DEEYDVEQEERKPE

A0A6J1FEF6 uncharacterized protein LOC111443208

1.6e-66

88.89

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Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTVMATPNMNKELHYLNKEDRLLRWLLVKHRDAK
        MPLYDCMLLMKPHV+KEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRY+QGQLMQMT+MATPNMNKELHYLNKEDRLLRWLLVKHRD K
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTVMATPNMNKELHYLNKEDRLLRWLLVKHRDAK

Query:  YGLEFLSEDDGKSELNKFPRTDFFGDDD----DDKEDDDDEEYDVEQEERKPE
        YGLEFLSEDDGK+ELNKFPR    GDDD    DD +DDDDEEYDVEQEER  E
Subjt:  YGLEFLSEDDGKSELNKFPRTDFFGDDD----DDKEDDDDEEYDVEQEERKPE

A0A6J1KXT7 uncharacterized protein LOC111498530

5.1e-65

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Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTVMATPNMNKELHYLNKEDRLLRWLLVKHRDAK
        MPLYDCMLLMKPHV+KEALLDLVARVGKHVFRRNGVVTD+KSFGVVQLGYGIKKLDGRY+QGQLMQMT+MATPNMNKELHYLNKEDRLLRWLLVKHRD K
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTVMATPNMNKELHYLNKEDRLLRWLLVKHRDAK

Query:  YGLEFLSEDDGKSELNKFPRTDFFGDDDDDKEDDDDEEYDVEQE-ERKPE
        YGLEFLSEDDGK+ELNKFPR    GDDD D+EDDDD++ DVEQE ER+ E
Subjt:  YGLEFLSEDDGKSELNKFPRTDFFGDDDDDKEDDDDEEYDVEQE-ERKPE

A0A7N2L1D1 Uncharacterized protein

2.0e-61

81.21

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Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTVMATPNMNKELHYLNKEDRLLRWLLVKHRDAK
        MPLYDCMLL+KPHVKKEAL++LVAR+GKHV+RRNGV+ D+KSFG+VQLGYGIKKLDGRYYQGQLMQMT+MATPN+NKELHYLNKEDRLLRWLLVKHRD K
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTVMATPNMNKELHYLNKEDRLLRWLLVKHRDAK

Query:  YGLEFLSEDDGKSELNKFPRTDFFGDD--DDDKEDDDDEEYDVEQEERK
        YGLEFLSEDDGK EL+KF R+  + DD  D+D +DDDD+EYDV+QEE+K
Subjt:  YGLEFLSEDDGKSELNKFPRTDFFGDD--DDDKEDDDDEEYDVEQEERK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G18760.1 Translation elongation factor EF1B/ribosomal protein S6 family protein

2.5e-43

62.96

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Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTVMATPNMNKELHYLNKEDRLLRWLLVKHRDAK
        MPLYDCMLL KP ++KE L+DLVAR+GKHV+ RNGV+T+IKSFG V+LGYGI+KLDGR+YQGQLMQ+T+M TPNMNKELHYLNKED+LLRWLLVKHRD K
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTVMATPNMNKELHYLNKEDRLLRWLLVKHRDAK

Query:  YGLEFLSEDDGKSELNKFPRTDFFGDDDDDKEDDD
         G     ++D  +  N+      +     D++D++
Subjt:  YGLEFLSEDDGKSELNKFPRTDFFGDDDDDKEDDD

AT3G18760.2 Translation elongation factor EF1B/ribosomal protein S6 family protein

1.4e-38

59.26

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Query:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTVMATPNMNKELHYLNKEDRLLRWLLVKHRDAK
        MPLYDCMLL KP ++KE L+DLVAR+GKHV+ RNGV+T+IKSFG V+LGYGI+KLDGR+Y     Q+T+M TPNMNKELHYLNKED+LLRWLLVKHRD K
Subjt:  MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTVMATPNMNKELHYLNKEDRLLRWLLVKHRDAK

Query:  YGLEFLSEDDGKSELNKFPRTDFFGDDDDDKEDDD
         G     ++D  +  N+      +     D++D++
Subjt:  YGLEFLSEDDGKSELNKFPRTDFFGDDDDDKEDDD

Sequences

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CDS sequence

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ATGCCTCTTTACGATTGTATGCTTTTGATGAAACCCCATGTGAAGAAGGAGGCCTTGTTGGACTTGGTTGCTAGAGTGGGCAAGCATGTGTTCAGACGAAATGGGGTTGT
TACTGACATTAAGTCATTTGGAGTTGTTCAACTGGGTTATGGCATTAAGAAGCTCGATGGAAGATATTATCAGGGCCAACTTATGCAGATGACAGTGATGGCTACTCCCA
ACATGAACAAGGAGTTGCATTACTTGAACAAGGAAGATCGATTGTTGCGTTGGCTTTTGGTGAAGCATCGTGACGCAAAATATGGCTTGGAATTCCTTAGTGAAGATGAT
GGAAAGAGTGAACTCAACAAATTTCCTCGAACTGACTTCTTTGGTGATGATGATGACGATAAAGAAGATGATGACGATGAAGAATACGACGTGGAACAAGAAGAGAGGAA
ACCAGAGTGA

mRNA sequence

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Protein sequence

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MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTVMATPNMNKELHYLNKEDRLLRWLLVKHRDAKYGLEFLSEDD
GKSELNKFPRTDFFGDDDDDKEDDDDEEYDVEQEERKPE

Spg021393 (gene) of Sponge gourd (cylindrica) v1 genome