CuGenDBv2

Gene ID	Spg021400
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	protein LOW PSII ACCUMULATION 3, chloroplastic
Genome location	scaffold6:47361846..47367818
RNA-Seq Expression	Spg021400
Synteny	Spg021400
Gene Ontology terms	NA
InterPro domains	IPR018962 - Domain of unknown function DUF1995 IPR044687 - Protein LOW PSII ACCUMULATION 3

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAE8650015.1 hypothetical protein Csa_009730 [Cucumis sativus]

1.2e-79

77.4

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Query:  MTESMQLIRQFCDCFIDPLKATRTRVFFPEANEVKFARNTVFEGASLKLDYLTKPSFFEDFGFVEKVKMADRVKAEDELFLVAYPYFNVNEMLVVEELYK
        MTESMQLIRQFCDCFIDPLKATRTRVFFPEANEVKFARNT FEG S KLDYLTKPSFFEDFGFVEKVKMADRVK EDELFLVAYPYFNVNEMLVVEELYK
Subjt:  MTESMQLIRQFCDCFIDPLKATRTRVFFPEANEVKFARNTVFEGASLKLDYLTKPSFFEDFGFVEKVKMADRVKAEDELFLVAYPYFNVNEMLVVEELYK

Query:  EAVLNTTRKLIIFNGELDRIRSGCERLSAIFLPKAGSTYEDSLPENGDCILHSQLQGTKRRSSFQVSQCYPGPWKVLRKIRNNKYVCVHQQEDMPSLKEV
        EAV NTTRKLIIFNGELDRIRSG       F PK  +  +   PE          +G K    F   + YPGPWKVLRK+R NK+VCVHQQE+MPSLKEV
Subjt:  EAVLNTTRKLIIFNGELDRIRSGCERLSAIFLPKAGSTYEDSLPENGDCILHSQLQGTKRRSSFQVSQCYPGPWKVLRKIRNNKYVCVHQQEDMPSLKEV

Query:  ALNILPSS
        ALNILPSS
Subjt:  ALNILPSS

XP_022923333.1 protein LOW PSII ACCUMULATION 3, chloroplastic [Cucurbita moschata]

2.5e-80

77.4

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Query:  MTESMQLIRQFCDCFIDPLKATRTRVFFPEANEVKFARNTVFEGASLKLDYLTKPSFFEDFGFVEKVKMADRVKAEDELFLVAYPYFNVNEMLVVEELYK
        MTESMQLIRQFCDCFIDPLKATRTRVFFPEANEVKFARNT FEGAS KLDYLTKPSFFEDFGFVEKVKMADRVK EDELFLVAYPYFNVNEMLVVEELYK
Subjt:  MTESMQLIRQFCDCFIDPLKATRTRVFFPEANEVKFARNTVFEGASLKLDYLTKPSFFEDFGFVEKVKMADRVKAEDELFLVAYPYFNVNEMLVVEELYK

Query:  EAVLNTTRKLIIFNGELDRIRSGCERLSAIFLPKAGSTYEDSLPENGDCILHSQLQGTKRRSSFQVSQCYPGPWKVLRKIRNNKYVCVHQQEDMPSLKEV
        EAV NT RKLIIFNGELDRIRSG       F PK  +  +   P+          +G K    F   +CYPGPWKVLRK+R NK+VCVHQQ+DMPSLKEV
Subjt:  EAVLNTTRKLIIFNGELDRIRSGCERLSAIFLPKAGSTYEDSLPENGDCILHSQLQGTKRRSSFQVSQCYPGPWKVLRKIRNNKYVCVHQQEDMPSLKEV

Query:  ALNILPSS
        ALNILPSS
Subjt:  ALNILPSS

XP_022965338.1 protein LOW PSII ACCUMULATION 3, chloroplastic [Cucurbita maxima]

1.9e-80

77.88

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Query:  MTESMQLIRQFCDCFIDPLKATRTRVFFPEANEVKFARNTVFEGASLKLDYLTKPSFFEDFGFVEKVKMADRVKAEDELFLVAYPYFNVNEMLVVEELYK
        MTESMQLIRQFCDCFIDPLKATRTRVFFPEANEVKFARNT FEGAS KLDYLTKPSFFEDFGFVEKVKMADRVK EDELFLVAYPYFNVNEMLVVEELYK
Subjt:  MTESMQLIRQFCDCFIDPLKATRTRVFFPEANEVKFARNTVFEGASLKLDYLTKPSFFEDFGFVEKVKMADRVKAEDELFLVAYPYFNVNEMLVVEELYK

Query:  EAVLNTTRKLIIFNGELDRIRSGCERLSAIFLPKAGSTYEDSLPENGDCILHSQLQGTKRRSSFQVSQCYPGPWKVLRKIRNNKYVCVHQQEDMPSLKEV
        EAV NTTRKLIIFNGELDRIRSG       F PK  +  +   P+          +G K    F   +CYPGPWKVLRK+R NK VCVHQQ+DMPSLKEV
Subjt:  EAVLNTTRKLIIFNGELDRIRSGCERLSAIFLPKAGSTYEDSLPENGDCILHSQLQGTKRRSSFQVSQCYPGPWKVLRKIRNNKYVCVHQQEDMPSLKEV

Query:  ALNILPSS
        ALNILPSS
Subjt:  ALNILPSS

XP_038877166.1 protein LOW PSII ACCUMULATION 3, chloroplastic isoform X1 [Benincasa hispida]

1.7e-81

74.32

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Query:  MTESMQLIRQFCDCFIDPLKATRTRVFFPEANEVKFARNTVFEGASLKLDYLTKPSFFEDFGFVEKVKMADRVKAEDELFLVAYPYFNVNEMLVVEELYK
        MTESMQLIRQFCDCFIDPLKATRTRVFFPEANEVKFARNT FEG S KLDYLTKPSFFEDFGFVEKVKMADRVK EDELFLVAYPYFNVNEMLVVEELYK
Subjt:  MTESMQLIRQFCDCFIDPLKATRTRVFFPEANEVKFARNTVFEGASLKLDYLTKPSFFEDFGFVEKVKMADRVKAEDELFLVAYPYFNVNEMLVVEELYK

Query:  EAVLNTTRKLIIFNGELDRIRSGCERLSA--------------IFLPKAGSTYEDSLPENGDCILHSQLQGTKRRSSFQVSQCYPGPWKVLRKIRNNKYV
        EAV NTTRKLIIFNGELDRIRSGC  LS                F PK  +  +   P+          +G K    F   +CYPGPWKVLRK+R NK+V
Subjt:  EAVLNTTRKLIIFNGELDRIRSGCERLSA--------------IFLPKAGSTYEDSLPENGDCILHSQLQGTKRRSSFQVSQCYPGPWKVLRKIRNNKYV

Query:  CVHQQEDMPSLKEVALNILPSS
        CVHQQEDMPSLKEVALNILPSS
Subjt:  CVHQQEDMPSLKEVALNILPSS

XP_038877167.1 protein LOW PSII ACCUMULATION 3, chloroplastic isoform X2 [Benincasa hispida]

8.6e-81

77.88

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Query:  MTESMQLIRQFCDCFIDPLKATRTRVFFPEANEVKFARNTVFEGASLKLDYLTKPSFFEDFGFVEKVKMADRVKAEDELFLVAYPYFNVNEMLVVEELYK
        MTESMQLIRQFCDCFIDPLKATRTRVFFPEANEVKFARNT FEG S KLDYLTKPSFFEDFGFVEKVKMADRVK EDELFLVAYPYFNVNEMLVVEELYK
Subjt:  MTESMQLIRQFCDCFIDPLKATRTRVFFPEANEVKFARNTVFEGASLKLDYLTKPSFFEDFGFVEKVKMADRVKAEDELFLVAYPYFNVNEMLVVEELYK

Query:  EAVLNTTRKLIIFNGELDRIRSGCERLSAIFLPKAGSTYEDSLPENGDCILHSQLQGTKRRSSFQVSQCYPGPWKVLRKIRNNKYVCVHQQEDMPSLKEV
        EAV NTTRKLIIFNGELDRIRSG       F PK  +  +   P+          +G K    F   +CYPGPWKVLRK+R NK+VCVHQQEDMPSLKEV
Subjt:  EAVLNTTRKLIIFNGELDRIRSGCERLSAIFLPKAGSTYEDSLPENGDCILHSQLQGTKRRSSFQVSQCYPGPWKVLRKIRNNKYVCVHQQEDMPSLKEV

Query:  ALNILPSS
        ALNILPSS
Subjt:  ALNILPSS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L151 DUF1995 domain-containing protein

6.0e-80

77.4

Show/hide

Query:  MTESMQLIRQFCDCFIDPLKATRTRVFFPEANEVKFARNTVFEGASLKLDYLTKPSFFEDFGFVEKVKMADRVKAEDELFLVAYPYFNVNEMLVVEELYK
        MTESMQLIRQFCDCFIDPLKATRTRVFFPEANEVKFARNT FEG S KLDYLTKPSFFEDFGFVEKVKMADRVK EDELFLVAYPYFNVNEMLVVEELYK
Subjt:  MTESMQLIRQFCDCFIDPLKATRTRVFFPEANEVKFARNTVFEGASLKLDYLTKPSFFEDFGFVEKVKMADRVKAEDELFLVAYPYFNVNEMLVVEELYK

Query:  EAVLNTTRKLIIFNGELDRIRSGCERLSAIFLPKAGSTYEDSLPENGDCILHSQLQGTKRRSSFQVSQCYPGPWKVLRKIRNNKYVCVHQQEDMPSLKEV
        EAV NTTRKLIIFNGELDRIRSG       F PK  +  +   PE          +G K    F   + YPGPWKVLRK+R NK+VCVHQQE+MPSLKEV
Subjt:  EAVLNTTRKLIIFNGELDRIRSGCERLSAIFLPKAGSTYEDSLPENGDCILHSQLQGTKRRSSFQVSQCYPGPWKVLRKIRNNKYVCVHQQEDMPSLKEV

Query:  ALNILPSS
        ALNILPSS
Subjt:  ALNILPSS

A0A1S3BKQ4 protein LOW PSII ACCUMULATION 3, chloroplastic isoform X2

1.5e-78

76.44

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Query:  MTESMQLIRQFCDCFIDPLKATRTRVFFPEANEVKFARNTVFEGASLKLDYLTKPSFFEDFGFVEKVKMADRVKAEDELFLVAYPYFNVNEMLVVEELYK
        MTESMQLIRQFCDCFIDPLKATRTRVFFPEANEVKFARNT FEG S KLDYLTKPSFFEDFGFVEKVKMADRVK EDELFLVAYPYFNVNEMLVVEELYK
Subjt:  MTESMQLIRQFCDCFIDPLKATRTRVFFPEANEVKFARNTVFEGASLKLDYLTKPSFFEDFGFVEKVKMADRVKAEDELFLVAYPYFNVNEMLVVEELYK

Query:  EAVLNTTRKLIIFNGELDRIRSGCERLSAIFLPKAGSTYEDSLPENGDCILHSQLQGTKRRSSFQVSQCYPGPWKVLRKIRNNKYVCVHQQEDMPSLKEV
        EAV NTTRKLIIFNGELDRIRSG       F PK  +  +   P+          +G K    F   + YPGPWKVLRK+R NK  CVHQQE+MPSLKEV
Subjt:  EAVLNTTRKLIIFNGELDRIRSGCERLSAIFLPKAGSTYEDSLPENGDCILHSQLQGTKRRSSFQVSQCYPGPWKVLRKIRNNKYVCVHQQEDMPSLKEV

Query:  ALNILPSS
        ALNILPSS
Subjt:  ALNILPSS

A0A6J1CWD3 protein LOW PSII ACCUMULATION 3, chloroplastic isoform X1

3.9e-79

75.96

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Query:  MTESMQLIRQFCDCFIDPLKATRTRVFFPEANEVKFARNTVFEGASLKLDYLTKPSFFEDFGFVEKVKMADRVKAEDELFLVAYPYFNVNEMLVVEELYK
        MTESMQLIRQFCDC IDPLKATRTRVFFPEANEVKFARNT FEGAS KLDYLTKPSFFEDFGFVEKVKMADRVK EDELFLVAYPYFNVNEMLVVEELYK
Subjt:  MTESMQLIRQFCDCFIDPLKATRTRVFFPEANEVKFARNTVFEGASLKLDYLTKPSFFEDFGFVEKVKMADRVKAEDELFLVAYPYFNVNEMLVVEELYK

Query:  EAVLNTTRKLIIFNGELDRIRSGCERLSAIFLPKAGSTYEDSLPENGDCILHSQLQGTKRRSSFQVSQCYPGPWKVLRKIRNNKYVCVHQQEDMPSLKEV
        EAV+NTTRKLIIFNGELDRIRSG       F PK  +  +   P           +G K    F   +CYPGPWKVLRK+R NK+VC+HQQ+DMPSLKEV
Subjt:  EAVLNTTRKLIIFNGELDRIRSGCERLSAIFLPKAGSTYEDSLPENGDCILHSQLQGTKRRSSFQVSQCYPGPWKVLRKIRNNKYVCVHQQEDMPSLKEV

Query:  ALNILPSS
        ALNILP++
Subjt:  ALNILPSS

A0A6J1E988 protein LOW PSII ACCUMULATION 3, chloroplastic

1.2e-80

77.4

Show/hide

Query:  MTESMQLIRQFCDCFIDPLKATRTRVFFPEANEVKFARNTVFEGASLKLDYLTKPSFFEDFGFVEKVKMADRVKAEDELFLVAYPYFNVNEMLVVEELYK
        MTESMQLIRQFCDCFIDPLKATRTRVFFPEANEVKFARNT FEGAS KLDYLTKPSFFEDFGFVEKVKMADRVK EDELFLVAYPYFNVNEMLVVEELYK
Subjt:  MTESMQLIRQFCDCFIDPLKATRTRVFFPEANEVKFARNTVFEGASLKLDYLTKPSFFEDFGFVEKVKMADRVKAEDELFLVAYPYFNVNEMLVVEELYK

Query:  EAVLNTTRKLIIFNGELDRIRSGCERLSAIFLPKAGSTYEDSLPENGDCILHSQLQGTKRRSSFQVSQCYPGPWKVLRKIRNNKYVCVHQQEDMPSLKEV
        EAV NT RKLIIFNGELDRIRSG       F PK  +  +   P+          +G K    F   +CYPGPWKVLRK+R NK+VCVHQQ+DMPSLKEV
Subjt:  EAVLNTTRKLIIFNGELDRIRSGCERLSAIFLPKAGSTYEDSLPENGDCILHSQLQGTKRRSSFQVSQCYPGPWKVLRKIRNNKYVCVHQQEDMPSLKEV

Query:  ALNILPSS
        ALNILPSS
Subjt:  ALNILPSS

A0A6J1HNL5 protein LOW PSII ACCUMULATION 3, chloroplastic

9.3e-81

77.88

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Query:  MTESMQLIRQFCDCFIDPLKATRTRVFFPEANEVKFARNTVFEGASLKLDYLTKPSFFEDFGFVEKVKMADRVKAEDELFLVAYPYFNVNEMLVVEELYK
        MTESMQLIRQFCDCFIDPLKATRTRVFFPEANEVKFARNT FEGAS KLDYLTKPSFFEDFGFVEKVKMADRVK EDELFLVAYPYFNVNEMLVVEELYK
Subjt:  MTESMQLIRQFCDCFIDPLKATRTRVFFPEANEVKFARNTVFEGASLKLDYLTKPSFFEDFGFVEKVKMADRVKAEDELFLVAYPYFNVNEMLVVEELYK

Query:  EAVLNTTRKLIIFNGELDRIRSGCERLSAIFLPKAGSTYEDSLPENGDCILHSQLQGTKRRSSFQVSQCYPGPWKVLRKIRNNKYVCVHQQEDMPSLKEV
        EAV NTTRKLIIFNGELDRIRSG       F PK  +  +   P+          +G K    F   +CYPGPWKVLRK+R NK VCVHQQ+DMPSLKEV
Subjt:  EAVLNTTRKLIIFNGELDRIRSGCERLSAIFLPKAGSTYEDSLPENGDCILHSQLQGTKRRSSFQVSQCYPGPWKVLRKIRNNKYVCVHQQEDMPSLKEV

Query:  ALNILPSS
        ALNILPSS
Subjt:  ALNILPSS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G48790.1 Domain of unknown function (DUF1995)

2.5e-70

66.35

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Query:  MTESMQLIRQFCDCFIDPLKATRTRVFFPEANEVKFARNTVFEGASLKLDYLTKPSFFEDFGFVEKVKMADRVKAEDELFLVAYPYFNVNEMLVVEELYK
        MTES+ +IR+FCD  + P KA  TR+FFPEANEVKFA+ TVF G   KLDYLTKPS FEDFGF E+VKMADRVK EDELFLVAYPYFNVNEMLVVEELYK
Subjt:  MTESMQLIRQFCDCFIDPLKATRTRVFFPEANEVKFARNTVFEGASLKLDYLTKPSFFEDFGFVEKVKMADRVKAEDELFLVAYPYFNVNEMLVVEELYK

Query:  EAVLNTTRKLIIFNGELDRIRSGCERLSAIFLPKAGSTYEDSLPENGDCILHSQLQGTKRRSSFQVSQCYPGPWKVLRKIRNNKYVCVHQQEDMPSLKEV
        EAV+NT RKLIIFNGELDRIRSG       F PK  +  +  LP+          +G K    F   +CYPGPW+VLR+ R NKY+CVHQQE MPSLKEV
Subjt:  EAVLNTTRKLIIFNGELDRIRSGCERLSAIFLPKAGSTYEDSLPENGDCILHSQLQGTKRRSSFQVSQCYPGPWKVLRKIRNNKYVCVHQQEDMPSLKEV

Query:  ALNILPSS
        AL+IL S+
Subjt:  ALNILPSS

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGACTGAGAGTATGCAATTGATTCGCCAATTTTGTGACTGCTTCATAGATCCATTGAAAGCCACTCGGACCAGAGTATTCTTTCCAGAGGCCAACGAAGTTAAATTTGC
AAGAAACACAGTGTTTGAAGGGGCCTCGTTGAAGTTGGATTATCTAACGAAACCATCATTTTTTGAGGATTTTGGTTTTGTTGAGAAAGTGAAAATGGCCGATCGTGTGA
AAGCAGAAGATGAGCTTTTTCTGGTTGCATATCCATATTTCAATGTCAATGAAATGCTTGTGGTGGAAGAGCTTTACAAGGAAGCTGTATTAAACACTACACGAAAGCTT
ATAATATTTAATGGAGAGCTCGACCGCATTAGATCTGGCTGTGAAAGACTATCCGCCATTTTTCTACCCAAAGCTGGCAGCACTTATGAAGACTCTCTTCCCGAAAATGG
AGACTGTATATTACATTCACAACTTCAAGGGACAAAAAGGAGGAGTTCTTTTCAGGTTTCCCAGTGCTACCCAGGTCCTTGGAAAGTCCTTAGAAAAATAAGGAATAACA
AATATGTCTGCGTGCATCAGCAAGAAGACATGCCTTCTCTCAAGGAAGTTGCTTTGAACATTCTTCCATCATCTTGA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MTESMQLIRQFCDCFIDPLKATRTRVFFPEANEVKFARNTVFEGASLKLDYLTKPSFFEDFGFVEKVKMADRVKAEDELFLVAYPYFNVNEMLVVEELYKEAVLNTTRKL
IIFNGELDRIRSGCERLSAIFLPKAGSTYEDSLPENGDCILHSQLQGTKRRSSFQVSQCYPGPWKVLRKIRNNKYVCVHQQEDMPSLKEVALNILPSS

Spg021400 (gene) of Sponge gourd (cylindrica) v1 genome