; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg021471 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg021471
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Genome locationscaffold9:6217877..6221519
RNA-Seq ExpressionSpg021471
SyntenySpg021471
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040811.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.5e-3264.39Show/hide
Query:  EEVDNSKKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSIFDRLKVTNDQPRRKIENLDVKLFNEVGSD
        EEVDNS + +QRTSVFDRIKP TTR SVFQR+S+   EEENQC  ST TR SAF+ LS+STSKK R STS FDRLK+ NDQ +R++++L VK F+E   D
Subjt:  EEVDNSKKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSIFDRLKVTNDQPRRKIENLDVKLFNEVGSD

Query:  KKLQSSIPSRMKRKFSVLINTEGSLKFLPPKF
         K+ S +PSRMKRK SV INTEGSL  + P+F
Subjt:  KKLQSSIPSRMKRKFSVLINTEGSLKFLPPKF

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.3e-3366.67Show/hide
Query:  EEVDNSKKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSIFDRLKVTNDQPRRKIENLDVKLFNEVGSD
        EEVDNS + +QRTSVFDRIKP TTR SVFQR+SMA  EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R++++L  K F+E   D
Subjt:  EEVDNSKKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSIFDRLKVTNDQPRRKIENLDVKLFNEVGSD

Query:  KKLQSSIPSRMKRKFSVLINTEGSLKFLP
         K+ S +PSRMKRK SV INTEGSL   P
Subjt:  KKLQSSIPSRMKRKFSVLINTEGSLKFLP

KAA0050734.1 gag protease polyprotein [Cucumis melo var. makuwa]8.6e-3365.12Show/hide
Query:  EEVDNSKKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSIFDRLKVTNDQPRRKIENLDVKLFNEVGSD
        EEVDNS + +QRTS+FDRIKP TTR  VFQR+SMA  EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R++++L  K F+E   D
Subjt:  EEVDNSKKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSIFDRLKVTNDQPRRKIENLDVKLFNEVGSD

Query:  KKLQSSIPSRMKRKFSVLINTEGSLKFLP
         K+ S +PSRMKRK SV INTEGSL   P
Subjt:  KKLQSSIPSRMKRKFSVLINTEGSLKFLP

KAA0055462.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.5e-3261.97Show/hide
Query:  EKENFATSYCIDVEEVDNSKKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSIFDRLKVTNDQPRRKIE
        E +N   SY    EEVDNS + +QRTSVFDRIKP TTR SVFQR+SMA  EE+NQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+++
Subjt:  EKENFATSYCIDVEEVDNSKKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSIFDRLKVTNDQPRRKIE

Query:  NLDVKLFNEVGSDKKLQSSIPSRMKRKFSVLINTEGSLKFLP
        +L  K F+E   D K+ + +PSRMKRK SV INTEGSL   P
Subjt:  NLDVKLFNEVGSDKKLQSSIPSRMKRKFSVLINTEGSLKFLP

TYK08944.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.5e-3261.97Show/hide
Query:  EKENFATSYCIDVEEVDNSKKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSIFDRLKVTNDQPRRKIE
        E +N   SY    EEVDNS + +QRTSVFDRIKP TTR SVFQR+SMA  EE+NQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+++
Subjt:  EKENFATSYCIDVEEVDNSKKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSIFDRLKVTNDQPRRKIE

Query:  NLDVKLFNEVGSDKKLQSSIPSRMKRKFSVLINTEGSLKFLP
        +L  K F+E   D K+ + +PSRMKRK SV INTEGSL   P
Subjt:  NLDVKLFNEVGSDKKLQSSIPSRMKRKFSVLINTEGSLKFLP

TrEMBL top hitse value%identityAlignment
A0A5A7TGM1 Retrotransposon gag protein7.1e-3364.39Show/hide
Query:  EEVDNSKKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSIFDRLKVTNDQPRRKIENLDVKLFNEVGSD
        EEVDNS + +QRTSVFDRIKP TTR SVFQR+S+   EEENQC  ST TR SAF+ LS+STSKK R STS FDRLK+ NDQ +R++++L VK F+E   D
Subjt:  EEVDNSKKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSIFDRLKVTNDQPRRKIENLDVKLFNEVGSD

Query:  KKLQSSIPSRMKRKFSVLINTEGSLKFLPPKF
         K+ S +PSRMKRK SV INTEGSL  + P+F
Subjt:  KKLQSSIPSRMKRKFSVLINTEGSLKFLPPKF

A0A5A7TQ06 Retrotransposon gag protein6.4e-3466.67Show/hide
Query:  EEVDNSKKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSIFDRLKVTNDQPRRKIENLDVKLFNEVGSD
        EEVDNS + +QRTSVFDRIKP TTR SVFQR+SMA  EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R++++L  K F+E   D
Subjt:  EEVDNSKKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSIFDRLKVTNDQPRRKIENLDVKLFNEVGSD

Query:  KKLQSSIPSRMKRKFSVLINTEGSLKFLP
         K+ S +PSRMKRK SV INTEGSL   P
Subjt:  KKLQSSIPSRMKRKFSVLINTEGSLKFLP

A0A5A7UI09 Retrotransposon gag protein7.1e-3361.97Show/hide
Query:  EKENFATSYCIDVEEVDNSKKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSIFDRLKVTNDQPRRKIE
        E +N   SY    EEVDNS + +QRTSVFDRIKP TTR SVFQR+SMA  EE+NQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+++
Subjt:  EKENFATSYCIDVEEVDNSKKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSIFDRLKVTNDQPRRKIE

Query:  NLDVKLFNEVGSDKKLQSSIPSRMKRKFSVLINTEGSLKFLP
        +L  K F+E   D K+ + +PSRMKRK SV INTEGSL   P
Subjt:  NLDVKLFNEVGSDKKLQSSIPSRMKRKFSVLINTEGSLKFLP

A0A5D3BBF9 Gag protease polyprotein4.2e-3365.12Show/hide
Query:  EEVDNSKKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSIFDRLKVTNDQPRRKIENLDVKLFNEVGSD
        EEVDNS + +QRTS+FDRIKP TTR  VFQR+SMA  EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R++++L  K F+E   D
Subjt:  EEVDNSKKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSIFDRLKVTNDQPRRKIENLDVKLFNEVGSD

Query:  KKLQSSIPSRMKRKFSVLINTEGSLKFLP
         K+ S +PSRMKRK SV INTEGSL   P
Subjt:  KKLQSSIPSRMKRKFSVLINTEGSLKFLP

A0A5D3CCI8 Retrotransposon gag protein7.1e-3361.97Show/hide
Query:  EKENFATSYCIDVEEVDNSKKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSIFDRLKVTNDQPRRKIE
        E +N   SY    EEVDNS + +QRTSVFDRIKP TTR SVFQR+SMA  EE+NQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+++
Subjt:  EKENFATSYCIDVEEVDNSKKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSIFDRLKVTNDQPRRKIE

Query:  NLDVKLFNEVGSDKKLQSSIPSRMKRKFSVLINTEGSLKFLP
        +L  K F+E   D K+ + +PSRMKRK SV INTEGSL   P
Subjt:  NLDVKLFNEVGSDKKLQSSIPSRMKRKFSVLINTEGSLKFLP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACAACTTTTACACGGGTTCTACTACCTATTGTTGCTTCAATGAAATGAGGTTGCAAGAAGATAAAGCTCCTATCATTGCAAGCGGTGAAATAACATTGCAGGGGGC
ATGTACTGATGGCAAGTTTCTTGTGAAGTATAACCCCTTGTTCGAGCCTGATTCTGACATAGTGACTGTCATGATGACTGAGACAAGAACTACGGAAGAAAGAATGGCTG
AGATGCAGGAACACATCAACACCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATCGCGCAACTAAAGAGCCAAATTGAGAACCAACATATCGCCGAATCAAAACTT
TCCACAAAAAAAGAAAAAGAAAACTTTGCAACTTCCTACTGCATCGACGTGGAAGAAGTTGACAATTCCAAGAAGGGTGAACAAAGGACCTCCGTCTTCGATCGCATCAA
GCCTCCAACTACTCGTCCTTCGGTATTCCAAAGAATGAGTATGGCCGCGACAGAAGAAGAAAATCAATGTGTGGTGTCCACCTCCACTCGACCTTCGGCTTTCCAAAGAC
TAAGTGTCTCCACATCGAAGAAAAGTCGATCTTCAACATCTATCTTTGATCGCCTCAAAGTAACAAACGATCAACCTCGAAGAAAGATAGAAAACTTAGATGTGAAATTG
TTCAATGAAGTAGGCAGTGACAAGAAGCTTCAAAGTAGCATCCCGTCACGTATGAAGAGGAAGTTCTCTGTTCTCATAAATACAGAAGGTTCCTTGAAGTTCCTTCCTCC
CAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCCAAATTCGAAGGTTCTCACGCGCTCCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGCTCTCACGCGC
TCCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTCCGCTGCAGTTCCTTCCTCCAGGTTCGAAAGGTTCTCACGCGCTCCGATGCTGCAGTTCATTCCTC
CAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAATTCCTTCTCCCCAAGTTCGAAGGTTCTCATGCGCTTCGCTGCAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCACGCG
CTTCGCTGCAGTTCCTTCCTCAAAGTTCTCGAAGGTTCTCACGCAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCAAAGTTCGAAGCACACGCTCCGCTGCAGTT
CCTACTTCTCCAAGTTCGAAGGTTCTCAGGTTGCTTCGCTGCAGTTCTTTCCTCCAAGTTCGGAGGTTCTCACACTGTTTCTTCCTCATGTTGTTTCGCTGCAGTTCCTT
CTCTCCAAATTTGAAGGTTCTCACGCATTTCGCTGCAGTTCCTTCTCTCCAAGTTTGAAGGTTCACGCACTTCGCTGCAGTTCCTTCTCTCAATTCCTTCTCTCCAAGTT
CGAAGGTTCTCACATTGCTGCGTTGCAGTTCCTTCTCTCAAGTTTGAAGGTTCTCACGTGTTTCGCTGTAGTTCCTTCTCTCCAAGGTTCTCATGCGCTGCGTTGCAGTT
CCTTCTCCCCAAGTTCGAAGGTTTTCACACACTTTGATACAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCACGCTACGCTGCTTCCTTCTCCAAGTTTGAAGGTTCTCAT
GCTACGCTAGAATGCGTTGCTGTGCTACTTTCTTCTTTAAGTTCGAAGGATCCCACATTGCGCTGTTGTGTTGCTTCCTTCACCAAGTTCGAAGGTTCTCACGCTGCGCT
GTTGTGCTGCTTTTTTCTCCAAGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAACAACTTTTACACGGGTTCTACTACCTATTGTTGCTTCAATGAAATGAGGTTGCAAGAAGATAAAGCTCCTATCATTGCAAGCGGTGAAATAACATTGCAGGGGGC
ATGTACTGATGGCAAGTTTCTTGTGAAGTATAACCCCTTGTTCGAGCCTGATTCTGACATAGTGACTGTCATGATGACTGAGACAAGAACTACGGAAGAAAGAATGGCTG
AGATGCAGGAACACATCAACACCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATCGCGCAACTAAAGAGCCAAATTGAGAACCAACATATCGCCGAATCAAAACTT
TCCACAAAAAAAGAAAAAGAAAACTTTGCAACTTCCTACTGCATCGACGTGGAAGAAGTTGACAATTCCAAGAAGGGTGAACAAAGGACCTCCGTCTTCGATCGCATCAA
GCCTCCAACTACTCGTCCTTCGGTATTCCAAAGAATGAGTATGGCCGCGACAGAAGAAGAAAATCAATGTGTGGTGTCCACCTCCACTCGACCTTCGGCTTTCCAAAGAC
TAAGTGTCTCCACATCGAAGAAAAGTCGATCTTCAACATCTATCTTTGATCGCCTCAAAGTAACAAACGATCAACCTCGAAGAAAGATAGAAAACTTAGATGTGAAATTG
TTCAATGAAGTAGGCAGTGACAAGAAGCTTCAAAGTAGCATCCCGTCACGTATGAAGAGGAAGTTCTCTGTTCTCATAAATACAGAAGGTTCCTTGAAGTTCCTTCCTCC
CAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCCAAATTCGAAGGTTCTCACGCGCTCCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGCTCTCACGCGC
TCCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTCCGCTGCAGTTCCTTCCTCCAGGTTCGAAAGGTTCTCACGCGCTCCGATGCTGCAGTTCATTCCTC
CAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAATTCCTTCTCCCCAAGTTCGAAGGTTCTCATGCGCTTCGCTGCAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCACGCG
CTTCGCTGCAGTTCCTTCCTCAAAGTTCTCGAAGGTTCTCACGCAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCAAAGTTCGAAGCACACGCTCCGCTGCAGTT
CCTACTTCTCCAAGTTCGAAGGTTCTCAGGTTGCTTCGCTGCAGTTCTTTCCTCCAAGTTCGGAGGTTCTCACACTGTTTCTTCCTCATGTTGTTTCGCTGCAGTTCCTT
CTCTCCAAATTTGAAGGTTCTCACGCATTTCGCTGCAGTTCCTTCTCTCCAAGTTTGAAGGTTCACGCACTTCGCTGCAGTTCCTTCTCTCAATTCCTTCTCTCCAAGTT
CGAAGGTTCTCACATTGCTGCGTTGCAGTTCCTTCTCTCAAGTTTGAAGGTTCTCACGTGTTTCGCTGTAGTTCCTTCTCTCCAAGGTTCTCATGCGCTGCGTTGCAGTT
CCTTCTCCCCAAGTTCGAAGGTTTTCACACACTTTGATACAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCACGCTACGCTGCTTCCTTCTCCAAGTTTGAAGGTTCTCAT
GCTACGCTAGAATGCGTTGCTGTGCTACTTTCTTCTTTAAGTTCGAAGGATCCCACATTGCGCTGTTGTGTTGCTTCCTTCACCAAGTTCGAAGGTTCTCACGCTGCGCT
GTTGTGCTGCTTTTTTCTCCAAGTTTGA
Protein sequenceShow/hide protein sequence
MNNFYTGSTTYCCFNEMRLQEDKAPIIASGEITLQGACTDGKFLVKYNPLFEPDSDIVTVMMTETRTTEERMAEMQEHINTLMKAIEEKDSQIAQLKSQIENQHIAESKL
STKKEKENFATSYCIDVEEVDNSKKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSIFDRLKVTNDQPRRKIENLDVKL
FNEVGSDKKLQSSIPSRMKRKFSVLINTEGSLKFLPPKFEGSHALRCSSFLPNSKVLTRSAAVPSSKFEGSHALRCSSFLQVRRFSRAPLQFLPPGSKGSHALRCCSSFL
QVRRFSRASLQFLLPKFEGSHALRCSSFSPSSKVLTRFAAVPSSKFSKVLTQGSHALRCSSFLQSSKHTLRCSSYFSKFEGSQVASLQFFPPSSEVLTLFLPHVVSLQFL
LSKFEGSHAFRCSSFSPSLKVHALRCSSFSQFLLSKFEGSHIAALQFLLSSLKVLTCFAVVPSLQGSHALRCSSFSPSSKVFTHFDTVPSLQVRRFSRYAASFSKFEGSH
ATLECVAVLLSSLSSKDPTLRCCVASFTKFEGSHAALLCCFFLQV