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Spg021506 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg021506
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionsuccinate dehydrogenase assembly factor 1, mitochondrial
Genome locationscaffold9:5890447..5890734
RNA-Seq ExpressionSpg021506
SyntenySpg021506
Gene Ontology termsGO:0034553 - mitochondrial respiratory chain complex II assembly (biological process)
GO:0005739 - mitochondrion (cellular component)
InterPro domainsIPR008011 - Complex 1 LYR protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_021903887.1 succinate dehydrogenase assembly factor 1, mitochondrial [Carica papaya]4.1e-3077.78Show/hide
Query:  GPKLSGMQKQVLSLYRAFLRVARSKSPEDRRQIESVVSVEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSSFNLSLSQTRD
        GP+LSGMQ+QVLSLYR FLR ARSKS EDR+ IES+VS EFRRN+KQ+DRKNF+YIEYLLRRG KQLDQLKSP T+RLSS N+ LSQ +D
Subjt:  GPKLSGMQKQVLSLYRAFLRVARSKSPEDRRQIESVVSVEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSSFNLSLSQTRD

XP_022973401.1 succinate dehydrogenase assembly factor 1, mitochondrial [Cucurbita maxima]7.1e-3079.79Show/hide
Query:  AGPKLSGMQKQVLSLYRAFLRVARSKSPEDRRQIESVVSVEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSSFNLSLSQTRDSEP
        + PKLSGMQ QVLSLYRAFLR ARSKS EDR+ IESVVS EFRRNAK ID KNFIYIEYLLRRG+KQLDQL+SPATV LSS  L+ S T+DSEP
Subjt:  AGPKLSGMQKQVLSLYRAFLRVARSKSPEDRRQIESVVSVEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSSFNLSLSQTRDSEP

XP_023525064.1 succinate dehydrogenase assembly factor 1, mitochondrial [Cucurbita pepo subsp. pepo]1.5e-3284.04Show/hide
Query:  AGPKLSGMQKQVLSLYRAFLRVARSKSPEDRRQIESVVSVEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSSFNLSLSQTRDSEP
        + PKLSGMQ+QVLSLYRAFLR ARSKS EDRRQIESVVS EFRRNAK IDRKNFIYIEYLLRRGNKQLDQL+SPATV LSS  L+ S T+DSEP
Subjt:  AGPKLSGMQKQVLSLYRAFLRVARSKSPEDRRQIESVVSVEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSSFNLSLSQTRDSEP

XP_023923047.1 succinate dehydrogenase assembly factor 1, mitochondrial [Quercus suber]4.1e-3076.6Show/hide
Query:  AGPKLSGMQKQVLSLYRAFLRVARSKSPEDRRQIESVVSVEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSSFNLSLSQTRDSEP
        + PKLSGMQKQVLSLYR FLR AR+KS EDR +IES+VS EFRRN+KQ+DRKNF+YIEYLLRRG KQLDQLKSP TV LSS N+S+S+T DS+P
Subjt:  AGPKLSGMQKQVLSLYRAFLRVARSKSPEDRRQIESVVSVEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSSFNLSLSQTRDSEP

XP_031263493.1 succinate dehydrogenase assembly factor 1A, mitochondrial [Pistacia vera]1.5e-3279.57Show/hide
Query:  AGPKLSGMQKQVLSLYRAFLRVARSKSPEDRRQIESVVSVEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSSFNLSLSQTRDSE
        +GP+LSGMQKQVLSLYR FLR ARSKSPEDR Q+E++VS EFR+N+KQ+DRKNFIYIEYLLRRG KQL+QLKSP TVRLSS N+SLSQT++SE
Subjt:  AGPKLSGMQKQVLSLYRAFLRVARSKSPEDRRQIESVVSVEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSSFNLSLSQTRDSE

TrEMBL top hitse value%identityAlignment
A0A2I4FRD8 succinate dehydrogenase assembly factor 1, mitochondrial-like isoform X21.3e-2973.4Show/hide
Query:  AGPKLSGMQKQVLSLYRAFLRVARSKSPEDRRQIESVVSVEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSSFNLSLSQTRDSEP
        +GP+ SGMQKQVLSLYR FLR ARSKS ED ++IES+VS EFR N+KQIDRKNF+YIEYLLRRG KQLDQLKSP T+ LSS N+S+S+T+  EP
Subjt:  AGPKLSGMQKQVLSLYRAFLRVARSKSPEDRRQIESVVSVEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSSFNLSLSQTRDSEP

A0A2P5FEM4 LYR motif-containing protein1.3e-2974.19Show/hide
Query:  AGPKLSGMQKQVLSLYRAFLRVARSKSPEDRRQIESVVSVEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSSFNLSLSQTRDSE
        +GP+LSGMQKQVLSLYR FLR ARSKS E+R +IES+VS EFRRNAKQ+DRKNFIYIEYLLRRG KQLDQLK+P T+ LSSF++ L QT+ ++
Subjt:  AGPKLSGMQKQVLSLYRAFLRVARSKSPEDRRQIESVVSVEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSSFNLSLSQTRDSE

A0A6J1EX50 LOW QUALITY PROTEIN: succinate dehydrogenase assembly factor 1, mitochondrial5.8e-3079.57Show/hide
Query:  AGPKLSGMQKQVLSLYRAFLRVARSKSPEDRRQIESVVSVEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSSFNLSLSQTRDSE
        + PKLSGMQKQVLSLY AFLR ARSKS EDR++IESVVS EFRRNAK IDRK+FIYIEYLLRRGNKQLDQL+SPATV LS+  L+ S T+DSE
Subjt:  AGPKLSGMQKQVLSLYRAFLRVARSKSPEDRRQIESVVSVEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSSFNLSLSQTRDSE

A0A6J1I7F5 succinate dehydrogenase assembly factor 1, mitochondrial3.4e-3079.79Show/hide
Query:  AGPKLSGMQKQVLSLYRAFLRVARSKSPEDRRQIESVVSVEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSSFNLSLSQTRDSEP
        + PKLSGMQ QVLSLYRAFLR ARSKS EDR+ IESVVS EFRRNAK ID KNFIYIEYLLRRG+KQLDQL+SPATV LSS  L+ S T+DSEP
Subjt:  AGPKLSGMQKQVLSLYRAFLRVARSKSPEDRRQIESVVSVEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSSFNLSLSQTRDSEP

A0A7N2LDJ5 Uncharacterized protein3.4e-3076.6Show/hide
Query:  AGPKLSGMQKQVLSLYRAFLRVARSKSPEDRRQIESVVSVEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSSFNLSLSQTRDSEP
        + PKLSGMQKQVLSLYR FLR ARSKS EDR +IES+VS EFRRN+KQ+DRKNF+YIEYLLRRG KQLDQLKSP TV LSS N+S+S+T D +P
Subjt:  AGPKLSGMQKQVLSLYRAFLRVARSKSPEDRRQIESVVSVEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSSFNLSLSQTRDSEP

SwissProt top hitse value%identityAlignment
A6ZYX9 Succinate dehydrogenase assembly factor 1, mitochondrial5.7e-0640.85Show/hide
Query:  KLSGMQKQVLSLYRAFLRVARSKSPEDRRQIESVVSVEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSP
        +LSG+QK+VL LYRA +R A +K  E++    + +  EF +  + + RK+F  IE+LLR GNK++     P
Subjt:  KLSGMQKQVLSLYRAFLRVARSKSPEDRRQIESVVSVEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSP

A8PU71 Succinate dehydrogenase assembly factor 1, mitochondrial1.3e-0539.08Show/hide
Query:  SGMQKQVLSLYRAFLRVARSKSPEDRRQIESVVSVEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSSFNLSLSQTRDS
        S +Q+QVLSLYR  LR  R K   + R     V  EFR++A  + R + + IEYL RRG +QL  L+S     + +F  +   T +S
Subjt:  SGMQKQVLSLYRAFLRVARSKSPEDRRQIESVVSVEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSSFNLSLSQTRDS

B0K036 Succinate dehydrogenase assembly factor 1, mitochondrial3.3e-0641.77Show/hide
Query:  KLSGMQKQVLSLYRAFLRVARSKSPEDRRQIESVVSVEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSSF
        +LS +Q+QVLSLYR  LR  R K   + R     V  EFR++A  + R + + IEYL RRG +QL  L+S     + +F
Subjt:  KLSGMQKQVLSLYRAFLRVARSKSPEDRRQIESVVSVEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSSF

Q3E785 Succinate dehydrogenase assembly factor 1, mitochondrial5.7e-0640.85Show/hide
Query:  KLSGMQKQVLSLYRAFLRVARSKSPEDRRQIESVVSVEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSP
        +LSG+QK+VL LYRA +R A +K  E++    + +  EF +  + + RK+F  IE+LLR GNK++     P
Subjt:  KLSGMQKQVLSLYRAFLRVARSKSPEDRRQIESVVSVEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSP

Q54HG5 Succinate dehydrogenase assembly factor 1A, mitochondrial1.9e-0641.43Show/hide
Query:  SGMQKQVLSLYRAFLRVARSKSPED-RRQIESVVSVEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSP
        SG+QK VLSLYR+FLRV+  K  ++    I + +  +FR  A  I +++   IE LL +G +QL+Q++ P
Subjt:  SGMQKQVLSLYRAFLRVARSKSPED-RRQIESVVSVEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSP

Arabidopsis top hitse value%identityAlignment
AT2G39725.1 LYR family of Fe/S cluster biogenesis protein3.5e-2768.89Show/hide
Query:  MAGPKLSGMQKQVLSLYRAFLRVARSKSPEDRRQIESVVSVEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSSFNLSLSQT
        M   KLSGMQKQVLSLYR FLR ARS+  EDR++IE +VS EFR N+K++DRKNF YIEYLLR G KQLDQLKSPA V LSS  +  S+T
Subjt:  MAGPKLSGMQKQVLSLYRAFLRVARSKSPEDRRQIESVVSVEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSSFNLSLSQT

AT2G39725.2 LYR family of Fe/S cluster biogenesis protein3.5e-2768.89Show/hide
Query:  MAGPKLSGMQKQVLSLYRAFLRVARSKSPEDRRQIESVVSVEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSSFNLSLSQT
        M   KLSGMQKQVLSLYR FLR ARS+  EDR++IE +VS EFR N+K++DRKNF YIEYLLR G KQLDQLKSPA V LSS  +  S+T
Subjt:  MAGPKLSGMQKQVLSLYRAFLRVARSKSPEDRRQIESVVSVEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSSFNLSLSQT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGGTCCGAAGCTCTCAGGGATGCAAAAGCAAGTGCTCAGTCTATACAGAGCATTTCTCCGAGTCGCTCGTTCCAAATCCCCCGAAGATCGACGCCAAATAGAATC
GGTTGTCTCCGTCGAGTTCCGTCGAAACGCCAAGCAAATCGATCGCAAAAATTTCATCTACATTGAGTACCTTCTTCGTCGAGGTAACAAACAGTTGGATCAACTTAAAA
GCCCTGCAACTGTTCGATTGTCATCGTTCAATCTTAGTTTGTCTCAAACACGAGATTCTGAGCCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCGGTCCGAAGCTCTCAGGGATGCAAAAGCAAGTGCTCAGTCTATACAGAGCATTTCTCCGAGTCGCTCGTTCCAAATCCCCCGAAGATCGACGCCAAATAGAATC
GGTTGTCTCCGTCGAGTTCCGTCGAAACGCCAAGCAAATCGATCGCAAAAATTTCATCTACATTGAGTACCTTCTTCGTCGAGGTAACAAACAGTTGGATCAACTTAAAA
GCCCTGCAACTGTTCGATTGTCATCGTTCAATCTTAGTTTGTCTCAAACACGAGATTCTGAGCCTTGA
Protein sequenceShow/hide protein sequence
MAGPKLSGMQKQVLSLYRAFLRVARSKSPEDRRQIESVVSVEFRRNAKQIDRKNFIYIEYLLRRGNKQLDQLKSPATVRLSSFNLSLSQTRDSEP