; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg021515 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg021515
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Genome locationscaffold9:6995883..6998236
RNA-Seq ExpressionSpg021515
SyntenySpg021515
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.8e-2052.17Show/hide
Query:  MSMATTEEENQCVVSTFTQPSTFQRLSVSTSKKSRSSTSVFDRLKVTNHQPQRKIDNLDVKLFNEVGSDKKLQSSIPSRMKRKFSVLINTEGSLKFEGSH
        +SMAT EEENQC  ST+ + S F+RLS+STSKK R STS FDRLK+TN Q QR++ +L  K F+E   D K+ S +PSRMKRK SV INTEGSL  +   
Subjt:  MSMATTEEENQCVVSTFTQPSTFQRLSVSTSKKSRSSTSVFDRLKVTNHQPQRKIDNLDVKLFNEVGSDKKLQSSIPSRMKRKFSVLINTEGSLKFEGSH

Query:  ALHCNSFSPSSKVLM
         +  N  +   + ++
Subjt:  ALHCNSFSPSSKVLM

KAA0050734.1 gag protease polyprotein [Cucumis melo var. makuwa]6.5e-2062.77Show/hide
Query:  MSMATTEEENQCVVSTFTQPSTFQRLSVSTSKKSRSSTSVFDRLKVTNHQPQRKIDNLDVKLFNEVGSDKKLQSSIPSRMKRKFSVLINTEGSL
        +SMAT EEENQC  ST+ + S F+RLS+STSKK R STS FDRLK+TN Q QR++ +L  K F+E   D K+ S +PSRMKRK SV INTEGSL
Subjt:  MSMATTEEENQCVVSTFTQPSTFQRLSVSTSKKSRSSTSVFDRLKVTNHQPQRKIDNLDVKLFNEVGSDKKLQSSIPSRMKRKFSVLINTEGSL

KAA0063719.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.2e-2053.04Show/hide
Query:  MSMATTEEENQCVVSTFTQPSTFQRLSVSTSKKSRSSTSVFDRLKVTNHQPQRKIDNLDVKLFNEVGSDKKLQSSIPSRMKRKFSVLINTEGSLKFEGSH
        +SMAT EEENQC  ST+ + STF+RLS+STSKK R STS FDRLK+TN Q QR++  L  K F+E   D K+ S +PSRMKRK SV INTEGSL  +   
Subjt:  MSMATTEEENQCVVSTFTQPSTFQRLSVSTSKKSRSSTSVFDRLKVTNHQPQRKIDNLDVKLFNEVGSDKKLQSSIPSRMKRKFSVLINTEGSLKFEGSH

Query:  ALHCNSFSPSSKVLM
         +  N  +   + ++
Subjt:  ALHCNSFSPSSKVLM

KAA0065966.1 hypothetical protein E6C27_scaffold62G00430 [Cucumis melo var. makuwa]5.0e-2051.54Show/hide
Query:  MSMATTEEENQCVVSTFTQPSTFQRLSVSTSKKSRSSTSVFDRLKVTNHQPQRKIDNLDVKLFNEVGSDKKLQSSIPSRMKRKFSVLINTEGSLKFEGSH
        +SMAT EEENQC  ST+T+ S F+RLS+STSKK R STS FDR K+TN+Q QR+I +L  KLF+E   D K+ S +PSRMKRK SV INTE         
Subjt:  MSMATTEEENQCVVSTFTQPSTFQRLSVSTSKKSRSSTSVFDRLKVTNHQPQRKIDNLDVKLFNEVGSDKKLQSSIPSRMKRKFSVLINTEGSLKFEGSH

Query:  ALHCNSFSP-------SSKVLMCFATVPSL
             SF P       S KVL   +  PS+
Subjt:  ALHCNSFSP-------SSKVLMCFATVPSL

TYK30263.1 gag protease polyprotein [Cucumis melo var. makuwa]1.7e-2063.83Show/hide
Query:  MSMATTEEENQCVVSTFTQPSTFQRLSVSTSKKSRSSTSVFDRLKVTNHQPQRKIDNLDVKLFNEVGSDKKLQSSIPSRMKRKFSVLINTEGSL
        +SMAT EEENQC  ST+T+ S F+RLS+STSKK R STS FDR K+TN+Q QR+I +L  KLF+E   D K+ S +PSRMKRK SV INTE SL
Subjt:  MSMATTEEENQCVVSTFTQPSTFQRLSVSTSKKSRSSTSVFDRLKVTNHQPQRKIDNLDVKLFNEVGSDKKLQSSIPSRMKRKFSVLINTEGSL

TrEMBL top hitse value%identityAlignment
A0A5A7TQ06 Retrotransposon gag protein1.9e-2052.17Show/hide
Query:  MSMATTEEENQCVVSTFTQPSTFQRLSVSTSKKSRSSTSVFDRLKVTNHQPQRKIDNLDVKLFNEVGSDKKLQSSIPSRMKRKFSVLINTEGSLKFEGSH
        +SMAT EEENQC  ST+ + S F+RLS+STSKK R STS FDRLK+TN Q QR++ +L  K F+E   D K+ S +PSRMKRK SV INTEGSL  +   
Subjt:  MSMATTEEENQCVVSTFTQPSTFQRLSVSTSKKSRSSTSVFDRLKVTNHQPQRKIDNLDVKLFNEVGSDKKLQSSIPSRMKRKFSVLINTEGSLKFEGSH

Query:  ALHCNSFSPSSKVLM
         +  N  +   + ++
Subjt:  ALHCNSFSPSSKVLM

A0A5A7VDY3 Ty3-gypsy retrotransposon protein1.1e-2053.04Show/hide
Query:  MSMATTEEENQCVVSTFTQPSTFQRLSVSTSKKSRSSTSVFDRLKVTNHQPQRKIDNLDVKLFNEVGSDKKLQSSIPSRMKRKFSVLINTEGSLKFEGSH
        +SMAT EEENQC  ST+ + STF+RLS+STSKK R STS FDRLK+TN Q QR++  L  K F+E   D K+ S +PSRMKRK SV INTEGSL  +   
Subjt:  MSMATTEEENQCVVSTFTQPSTFQRLSVSTSKKSRSSTSVFDRLKVTNHQPQRKIDNLDVKLFNEVGSDKKLQSSIPSRMKRKFSVLINTEGSLKFEGSH

Query:  ALHCNSFSPSSKVLM
         +  N  +   + ++
Subjt:  ALHCNSFSPSSKVLM

A0A5A7VHY3 Uncharacterized protein2.4e-2051.54Show/hide
Query:  MSMATTEEENQCVVSTFTQPSTFQRLSVSTSKKSRSSTSVFDRLKVTNHQPQRKIDNLDVKLFNEVGSDKKLQSSIPSRMKRKFSVLINTEGSLKFEGSH
        +SMAT EEENQC  ST+T+ S F+RLS+STSKK R STS FDR K+TN+Q QR+I +L  KLF+E   D K+ S +PSRMKRK SV INTE         
Subjt:  MSMATTEEENQCVVSTFTQPSTFQRLSVSTSKKSRSSTSVFDRLKVTNHQPQRKIDNLDVKLFNEVGSDKKLQSSIPSRMKRKFSVLINTEGSLKFEGSH

Query:  ALHCNSFSP-------SSKVLMCFATVPSL
             SF P       S KVL   +  PS+
Subjt:  ALHCNSFSP-------SSKVLMCFATVPSL

A0A5D3BBF9 Gag protease polyprotein3.2e-2062.77Show/hide
Query:  MSMATTEEENQCVVSTFTQPSTFQRLSVSTSKKSRSSTSVFDRLKVTNHQPQRKIDNLDVKLFNEVGSDKKLQSSIPSRMKRKFSVLINTEGSL
        +SMAT EEENQC  ST+ + S F+RLS+STSKK R STS FDRLK+TN Q QR++ +L  K F+E   D K+ S +PSRMKRK SV INTEGSL
Subjt:  MSMATTEEENQCVVSTFTQPSTFQRLSVSTSKKSRSSTSVFDRLKVTNHQPQRKIDNLDVKLFNEVGSDKKLQSSIPSRMKRKFSVLINTEGSL

A0A5D3E2D7 Gag protease polyprotein8.3e-2163.83Show/hide
Query:  MSMATTEEENQCVVSTFTQPSTFQRLSVSTSKKSRSSTSVFDRLKVTNHQPQRKIDNLDVKLFNEVGSDKKLQSSIPSRMKRKFSVLINTEGSL
        +SMAT EEENQC  ST+T+ S F+RLS+STSKK R STS FDR K+TN+Q QR+I +L  KLF+E   D K+ S +PSRMKRK SV INTE SL
Subjt:  MSMATTEEENQCVVSTFTQPSTFQRLSVSTSKKSRSSTSVFDRLKVTNHQPQRKIDNLDVKLFNEVGSDKKLQSSIPSRMKRKFSVLINTEGSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTATGGCCACGACAGAAGAAGAAAATCAATGTGTGGTGTCCACCTTCACTCAACCTTCAACTTTCCAAAGACTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTC
AACATCGGTCTTTGATCGCCTCAAAGTAACAAACCATCAACCTCAAAGAAAGATAGATAACTTAGATGTGAAATTGTTCAATGAAGTAGGCAGTGACAAGAAGCTTCAAA
GTAGCATCCCGTCACGTATGAAGAGGAAGTTCTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGTTTGAAGGTTCTCATGCACTTCACTGCAATTCCTTCTCTCCAAGT
TCGAAGGTTCTCATGTGCTTCGCAACAGTTCCTTCTCTCCAAGTTCGAGGGTGCTTACGTTGTACGCTACTGAGTTGTTCCTTCTCCAAGTTTGAAGGTTCTCCGATGCA
CGCTCCTGTGTTACTCCTTCTCCAAGTTCGAAGGTTCTCGGCCTGCATTGCTGCGCTACTTCCTTCTTTAAGTTCGAAGGTTCTCACGTTGCGCTCTTGTGCTCCTTCCT
TCTCCAAGTTTGAAGGTTCTGACGCTGCGTTGCTTCCTTCAACAAGTTCGAAGGTTCTGACGTTGCGCTGCTTCCTTCTCCAAGTTCGAAGGTTCTCATGCCACGCTGCT
TCGTTGTTCCTTCTCAAAGTTTCAAGATTCTCATACGGCGATGCTACGCTGCTTCCTTCTTCAAGTTTGAAGGTTCTCATACGGCGCCGCTGCGCTGCTTCTTTCTCCAA
GTTTGAGGTTCTCATGCGCTTCGCTGAGATTTATTCTCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGGAGTTCTTTCTCTCCAAGTTTGAAGGTTCTCACGCGCTTC
GCTGTAGTTCCTTCTCTCCAAGTTCAAAGGCTCTCACATTGCTTCACTTCAGTTCCTTCTCCAATTTGAAACTTTTCTCCAAGTTTGAAGATTCTCATGCACTTCACTGT
AGTTCCTTCTCTCCAAGTTTGAAGGTTCTCACACGCTTCGCTACAGTTCCTTATCCAAGTTCGAAGGTTCTGACGCTACGCTGCTTTTTTCTCCAAGTTCGAAGTTTCTC
CACTGAACGCTCCTGCGTTGCTCGTTCTCCAAGTTCGAAGGTTCTCACGTTGCGCTGTTGTGCTGCTTCCTTCTGTAAGTTCGAAGGTTTGCACGTTGTTATGCTGCTTT
GTTGTTGTTCCTTCTCTCCGAGTTCGAAGGTTCTCACGTTGCTTCGTTGTTGTTCCTTCTCTAAATTCGAAGGTTCTCACGCTACGTTATTCGAAGGCTCTTCCTCTTAC
ACTGCATTGCATCGCTGTTCCTTCAACAAGTTCGAAGGTTCTTACGTTGAAGCAGTAAAAGAACCCAAGTGGGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTATGGCCACGACAGAAGAAGAAAATCAATGTGTGGTGTCCACCTTCACTCAACCTTCAACTTTCCAAAGACTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTC
AACATCGGTCTTTGATCGCCTCAAAGTAACAAACCATCAACCTCAAAGAAAGATAGATAACTTAGATGTGAAATTGTTCAATGAAGTAGGCAGTGACAAGAAGCTTCAAA
GTAGCATCCCGTCACGTATGAAGAGGAAGTTCTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGTTTGAAGGTTCTCATGCACTTCACTGCAATTCCTTCTCTCCAAGT
TCGAAGGTTCTCATGTGCTTCGCAACAGTTCCTTCTCTCCAAGTTCGAGGGTGCTTACGTTGTACGCTACTGAGTTGTTCCTTCTCCAAGTTTGAAGGTTCTCCGATGCA
CGCTCCTGTGTTACTCCTTCTCCAAGTTCGAAGGTTCTCGGCCTGCATTGCTGCGCTACTTCCTTCTTTAAGTTCGAAGGTTCTCACGTTGCGCTCTTGTGCTCCTTCCT
TCTCCAAGTTTGAAGGTTCTGACGCTGCGTTGCTTCCTTCAACAAGTTCGAAGGTTCTGACGTTGCGCTGCTTCCTTCTCCAAGTTCGAAGGTTCTCATGCCACGCTGCT
TCGTTGTTCCTTCTCAAAGTTTCAAGATTCTCATACGGCGATGCTACGCTGCTTCCTTCTTCAAGTTTGAAGGTTCTCATACGGCGCCGCTGCGCTGCTTCTTTCTCCAA
GTTTGAGGTTCTCATGCGCTTCGCTGAGATTTATTCTCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGGAGTTCTTTCTCTCCAAGTTTGAAGGTTCTCACGCGCTTC
GCTGTAGTTCCTTCTCTCCAAGTTCAAAGGCTCTCACATTGCTTCACTTCAGTTCCTTCTCCAATTTGAAACTTTTCTCCAAGTTTGAAGATTCTCATGCACTTCACTGT
AGTTCCTTCTCTCCAAGTTTGAAGGTTCTCACACGCTTCGCTACAGTTCCTTATCCAAGTTCGAAGGTTCTGACGCTACGCTGCTTTTTTCTCCAAGTTCGAAGTTTCTC
CACTGAACGCTCCTGCGTTGCTCGTTCTCCAAGTTCGAAGGTTCTCACGTTGCGCTGTTGTGCTGCTTCCTTCTGTAAGTTCGAAGGTTTGCACGTTGTTATGCTGCTTT
GTTGTTGTTCCTTCTCTCCGAGTTCGAAGGTTCTCACGTTGCTTCGTTGTTGTTCCTTCTCTAAATTCGAAGGTTCTCACGCTACGTTATTCGAAGGCTCTTCCTCTTAC
ACTGCATTGCATCGCTGTTCCTTCAACAAGTTCGAAGGTTCTTACGTTGAAGCAGTAAAAGAACCCAAGTGGGAATGA
Protein sequenceShow/hide protein sequence
MSMATTEEENQCVVSTFTQPSTFQRLSVSTSKKSRSSTSVFDRLKVTNHQPQRKIDNLDVKLFNEVGSDKKLQSSIPSRMKRKFSVLINTEGSLKFEGSHALHCNSFSPS
SKVLMCFATVPSLQVRGCLRCTLLSCSFSKFEGSPMHAPVLLLLQVRRFSACIAALLPSLSSKVLTLRSCAPSFSKFEGSDAALLPSTSSKVLTLRCFLLQVRRFSCHAA
SLFLLKVSRFSYGDATLLPSSSLKVLIRRRCAASFSKFEVLMRFAEIYSLQVRRFSRASLEFFLSKFEGSHALRCSSFSPSSKALTLLHFSSFSNLKLFSKFEDSHALHC
SSFSPSLKVLTRFATVPYPSSKVLTLRCFFLQVRSFSTERSCVARSPSSKVLTLRCCAASFCKFEGLHVVMLLCCCSFSPSSKVLTLLRCCSFSKFEGSHATLFEGSSSY
TALHRCSFNKFEGSYVEAVKEPKWE