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Spg021531 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg021531
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold9:5430785..5441278
RNA-Seq ExpressionSpg021531
SyntenySpg021531
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]1.9e-2249.3Show/hide
Query:  VYKLNQKLYLV-SCRV--FENEELDVPRGNRSSLQTGELDKT---------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESIPI--------
        ++K NQKLYLV   R+   EN +  +PRGNR SLQT ELDKT               V IELPVPD LPTSAESS ++SSTW+ELY ES+ +        
Subjt:  VYKLNQKLYLV-SCRV--FENEELDVPRGNRSSLQTGELDKT---------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESIPI--------

Query:  -----VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGG
             ++++FNV  G    +  DDV WLHA+FRAK  GGPGG
Subjt:  -----VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGG

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]4.6e-2148.59Show/hide
Query:  VYKLNQKLYLVSCRVFENEELDVP-RGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESIPI--------
        V+K NQKLYL      ++ + DV  RGNRSSLQ+GELD T                 VEIELPVPDTLPTSAESS ++SSTW+ELY ES+ +        
Subjt:  VYKLNQKLYLVSCRVFENEELDVP-RGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESIPI--------

Query:  -----VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGG
             ++++F+V  G    +  DDV WLHA+FRAK  GGPGG
Subjt:  -----VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGG

KAA0067117.1 hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa]2.0e-2148.09Show/hide
Query:  LYLVSCRVFENEELDVPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESIPIVNVLFNVQ--------
        L ++  R+   E L++PRGNRSSLQTGELDKT                 VEIELPVPDTLPTSAES  ++SSTW+ELY E + +  + +           
Subjt:  LYLVSCRVFENEELDVPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESIPIVNVLFNVQ--------

Query:  --EGQRVSLEEDDVRWLHAIFRAKLAGGPGG
          EG    +  DDV WLH +FRAK+AGGPGG
Subjt:  --EGQRVSLEEDDVRWLHAIFRAKLAGGPGG

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]1.4e-2249.64Show/hide
Query:  VYKLNQKLYLVSCRVFENEELDVPRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRTSSSTWVELYIESIPI-----------
        ++KLNQKLYL             PRGNR SLQTGELDKTV                IELPVPDTLPTSAESS ++SSTW+ELY ES+ +           
Subjt:  VYKLNQKLYLVSCRVFENEELDVPRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRTSSSTWVELYIESIPI-----------

Query:  --VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGG
          ++++FNV  G    +  DDV WLHA+FRAK  GGPGG
Subjt:  --VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGG

TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]4.6e-2148.59Show/hide
Query:  VYKLNQKLYLVSCRVFENEELDVP-RGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESIPI--------
        V+K NQKLYL      ++ + DV  RGNRSSLQ+GELD T                 VEIELPVPDTLPTSAESS ++SSTW+ELY ES+ +        
Subjt:  VYKLNQKLYLVSCRVFENEELDVP-RGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESIPI--------

Query:  -----VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGG
             ++++F+V  G    +  DDV WLHA+FRAK  GGPGG
Subjt:  -----VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGG

TrEMBL top hitse value%identityAlignment
A0A5A7UT17 CCHC-type domain-containing protein9.0e-2349.3Show/hide
Query:  VYKLNQKLYLV-SCRV--FENEELDVPRGNRSSLQTGELDKT---------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESIPI--------
        ++K NQKLYLV   R+   EN +  +PRGNR SLQT ELDKT               V IELPVPD LPTSAESS ++SSTW+ELY ES+ +        
Subjt:  VYKLNQKLYLV-SCRV--FENEELDVPRGNRSSLQTGELDKT---------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESIPI--------

Query:  -----VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGG
             ++++FNV  G    +  DDV WLHA+FRAK  GGPGG
Subjt:  -----VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGG

A0A5A7V9N3 Reverse transcriptase2.2e-2148.59Show/hide
Query:  VYKLNQKLYLVSCRVFENEELDVP-RGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESIPI--------
        V+K NQKLYL      ++ + DV  RGNRSSLQ+GELD T                 VEIELPVPDTLPTSAESS ++SSTW+ELY ES+ +        
Subjt:  VYKLNQKLYLVSCRVFENEELDVP-RGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESIPI--------

Query:  -----VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGG
             ++++F+V  G    +  DDV WLHA+FRAK  GGPGG
Subjt:  -----VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGG

A0A5A7VIY9 Uncharacterized protein9.9e-2248.09Show/hide
Query:  LYLVSCRVFENEELDVPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESIPIVNVLFNVQ--------
        L ++  R+   E L++PRGNRSSLQTGELDKT                 VEIELPVPDTLPTSAES  ++SSTW+ELY E + +  + +           
Subjt:  LYLVSCRVFENEELDVPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESIPIVNVLFNVQ--------

Query:  --EGQRVSLEEDDVRWLHAIFRAKLAGGPGG
          EG    +  DDV WLH +FRAK+AGGPGG
Subjt:  --EGQRVSLEEDDVRWLHAIFRAKLAGGPGG

A0A5D3CJX3 CCHC-type domain-containing protein6.9e-2349.64Show/hide
Query:  VYKLNQKLYLVSCRVFENEELDVPRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRTSSSTWVELYIESIPI-----------
        ++KLNQKLYL             PRGNR SLQTGELDKTV                IELPVPDTLPTSAESS ++SSTW+ELY ES+ +           
Subjt:  VYKLNQKLYLVSCRVFENEELDVPRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRTSSSTWVELYIESIPI-----------

Query:  --VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGG
          ++++FNV  G    +  DDV WLHA+FRAK  GGPGG
Subjt:  --VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGG

A0A5D3DSY7 Putative Retrotransposon protein2.2e-2148.59Show/hide
Query:  VYKLNQKLYLVSCRVFENEELDVP-RGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESIPI--------
        V+K NQKLYL      ++ + DV  RGNRSSLQ+GELD T                 VEIELPVPDTLPTSAESS ++SSTW+ELY ES+ +        
Subjt:  VYKLNQKLYLVSCRVFENEELDVP-RGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESIPI--------

Query:  -----VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGG
             ++++F+V  G    +  DDV WLHA+FRAK  GGPGG
Subjt:  -----VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCAACGTTCAGGAGGATCAGCGGAGCACAGGATTTTCGAGCAAACCAG
GAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGTAAGTTGTAGAGTGTTCGAAAATGAAGAGTTGGATGTGC
CAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGC
TCCAGTACGTGGGTGGAGTTGTATATTGAGTCTATTCCTATTGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCT
TCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGG
mRNA sequenceShow/hide mRNA sequence
ATGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCAACGTTCAGGAGGATCAGCGGAGCACAGGATTTTCGAGCAAACCAG
GAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGTAAGTTGTAGAGTGTTCGAAAATGAAGAGTTGGATGTGC
CAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGC
TCCAGTACGTGGGTGGAGTTGTATATTGAGTCTATTCCTATTGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCT
TCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGG
Protein sequenceShow/hide protein sequence
MSAESSRTSSSTWVELYIESVQRSGGSAEHRIFEQTRRISGVLWCFEHSGVYKLNQKLYLVSCRVFENEELDVPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRTS
SSTWVELYIESIPIVNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGG