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Spg021562 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg021562
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationscaffold9:7659196..7661871
RNA-Seq ExpressionSpg021562
SyntenySpg021562
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036850.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.8e-0745.56Show/hide
Query:  IANKMLRRMTEFAQLEIATTENLMLGKFTSPSQQP-NKTSSLNVMSFMMTDAGISEERMTEVEKKINMLLKMVEEKDQEIASLKNQMKIR
        IA  + ++M +  + EI   EN M+ +  S S+    +T   N+MS ++T+   SE+R TE+EKKINMLLK+VEE+D EIASLKN ++ R
Subjt:  IANKMLRRMTEFAQLEIATTENLMLGKFTSPSQQP-NKTSSLNVMSFMMTDAGISEERMTEVEKKINMLLKMVEEKDQEIASLKNQMKIR

KAA0039052.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]9.5e-0650Show/hide
Query:  IATTENLMLGKFTSPSQQPN-KTSSLNVMSFMMTDAGISEERMTEVEKKINMLLKMVEEKDQEIASLKNQMKIR
        I   EN ++ +  S S++ N +T   N+MS + TD   S+ RMTE+EKKINML+K VEE+D EIASLKN ++ R
Subjt:  IATTENLMLGKFTSPSQQPN-KTSSLNVMSFMMTDAGISEERMTEVEKKINMLLKMVEEKDQEIASLKNQMKIR

KAA0050708.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]9.5e-0654.1Show/hide
Query:  TSPSQQPNKTSSLNVMSFMMTDAGISEERMTEVEKKINMLLKMVEEKDQEIASLKNQMKIR
        +S    P +T   N+MS M+T+   SE+RMT++EKKINML+K+VEE+D EIASLKN ++ R
Subjt:  TSPSQQPNKTSSLNVMSFMMTDAGISEERMTEVEKKINMLLKMVEEKDQEIASLKNQMKIR

KAA0064216.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.2e-0648.65Show/hide
Query:  IATTENLMLGKFTSPSQQPNKTS-SLNVMSFMMTDAGISEERMTEVEKKINMLLKMVEEKDQEIASLKNQMKIR
        +   ENL + K  S S++ N+ +   N+MS M+TD   SE+RM E+EKK+NML+K+VEE+D EIA LKN ++ R
Subjt:  IATTENLMLGKFTSPSQQPNKTS-SLNVMSFMMTDAGISEERMTEVEKKINMLLKMVEEKDQEIASLKNQMKIR

TYK18586.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]4.2e-0648.65Show/hide
Query:  IATTENLMLGKFTSPSQQPNKTS-SLNVMSFMMTDAGISEERMTEVEKKINMLLKMVEEKDQEIASLKNQMKIR
        +   ENL + K  S S++ N+ +   N+MS M+TD   SE+RM E+EKK+NML+K+VEE+D EIA LKN ++ R
Subjt:  IATTENLMLGKFTSPSQQPNKTS-SLNVMSFMMTDAGISEERMTEVEKKINMLLKMVEEKDQEIASLKNQMKIR

TrEMBL top hitse value%identityAlignment
A0A5A7T0G6 Ty3-gypsy retrotransposon protein1.9e-0745.56Show/hide
Query:  IANKMLRRMTEFAQLEIATTENLMLGKFTSPSQQP-NKTSSLNVMSFMMTDAGISEERMTEVEKKINMLLKMVEEKDQEIASLKNQMKIR
        IA  + ++M +  + EI   EN M+ +  S S+    +T   N+MS ++T+   SE+R TE+EKKINMLLK+VEE+D EIASLKN ++ R
Subjt:  IANKMLRRMTEFAQLEIATTENLMLGKFTSPSQQP-NKTSSLNVMSFMMTDAGISEERMTEVEKKINMLLKMVEEKDQEIASLKNQMKIR

A0A5A7T6D4 Ty3-gypsy retrotransposon protein4.6e-0650Show/hide
Query:  IATTENLMLGKFTSPSQQPN-KTSSLNVMSFMMTDAGISEERMTEVEKKINMLLKMVEEKDQEIASLKNQMKIR
        I   EN ++ +  S S++ N +T   N+MS + TD   S+ RMTE+EKKINML+K VEE+D EIASLKN ++ R
Subjt:  IATTENLMLGKFTSPSQQPN-KTSSLNVMSFMMTDAGISEERMTEVEKKINMLLKMVEEKDQEIASLKNQMKIR

A0A5A7U601 Ty3-gypsy retrotransposon protein4.6e-0654.1Show/hide
Query:  TSPSQQPNKTSSLNVMSFMMTDAGISEERMTEVEKKINMLLKMVEEKDQEIASLKNQMKIR
        +S    P +T   N+MS M+T+   SE+RMT++EKKINML+K+VEE+D EIASLKN ++ R
Subjt:  TSPSQQPNKTSSLNVMSFMMTDAGISEERMTEVEKKINMLLKMVEEKDQEIASLKNQMKIR

A0A5A7VCV9 Retrotransposon gag protein2.1e-0648.65Show/hide
Query:  IATTENLMLGKFTSPSQQPNKTS-SLNVMSFMMTDAGISEERMTEVEKKINMLLKMVEEKDQEIASLKNQMKIR
        +   ENL + K  S S++ N+ +   N+MS M+TD   SE+RM E+EKK+NML+K+VEE+D EIA LKN ++ R
Subjt:  IATTENLMLGKFTSPSQQPNKTS-SLNVMSFMMTDAGISEERMTEVEKKINMLLKMVEEKDQEIASLKNQMKIR

A0A5D3D4X3 Ty3-gypsy retrotransposon protein2.1e-0648.65Show/hide
Query:  IATTENLMLGKFTSPSQQPNKTS-SLNVMSFMMTDAGISEERMTEVEKKINMLLKMVEEKDQEIASLKNQMKIR
        +   ENL + K  S S++ N+ +   N+MS M+TD   SE+RM E+EKK+NML+K+VEE+D EIA LKN ++ R
Subjt:  IATTENLMLGKFTSPSQQPNKTS-SLNVMSFMMTDAGISEERMTEVEKKINMLLKMVEEKDQEIASLKNQMKIR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTTGAAATGGAAGCCGCAGATCTCTAGCGTTCGCAAATCGCCGGCAAACCTCACGAAGCTCAATCTCTCTCTCAACAGCACTCCAGCAAACGATGAATCTAAAGC
TCACAAATGCTTCGCCGGCGTGGTTTGCGGGTTCATTCGTCGGCAGTGGGCGTCCGAGGGTTCGCAGGTTCGTTCGTCGAAGGTGGGTTCGTTTCGCTACTATTCAGACT
CAGATTCAGAGACTCACACTCAAAGAAGCATTCAGATAGAGTCAGAGAAATCAGAGTCCAGAGCATTATTCAAGAGTCCAGAGTCGTCAGAAGTTAGAGAGTCCAGAGTC
GTCAGAACCGATCCAAGAGATCATCAAGCCAACAGGCCGATCCAAGATATCATCAAGCCAACAAGCCAATCATCCAAGAAGATCAACAAGCCAACAAGCCGATCCAAGAG
ATCATCAAGCCAACAGGCTGATCCAAGAGATCATCAACCTAGCAAACTGATCATTCATAAACAGGTCATTGCAAACAAGATGCTGAGACGCATGACAGAATTTGCTCAAC
TTGAAATCGCCACTACAGAAAATCTGATGCTTGGCAAATTCACCTCTCCTTCTCAGCAACCAAACAAAACATCAAGTCTTAATGTGATGTCTTTTATGATGACTGATGCA
GGAATTAGTGAAGAACGAATGACTGAAGTTGAGAAGAAAATCAACATGTTACTGAAGATGGTTGAAGAGAAAGACCAAGAAATCGCCTCTCTCAAGAACCAGATGAAAAT
CAGACTGCCAGAGCCAACCAAGGTAGTTGGAAAGCAAAAGCGGAAAGAAAAATGGAGTCTTGGTGCCATGCGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATTTGAAATGGAAGCCGCAGATCTCTAGCGTTCGCAAATCGCCGGCAAACCTCACGAAGCTCAATCTCTCTCTCAACAGCACTCCAGCAAACGATGAATCTAAAGC
TCACAAATGCTTCGCCGGCGTGGTTTGCGGGTTCATTCGTCGGCAGTGGGCGTCCGAGGGTTCGCAGGTTCGTTCGTCGAAGGTGGGTTCGTTTCGCTACTATTCAGACT
CAGATTCAGAGACTCACACTCAAAGAAGCATTCAGATAGAGTCAGAGAAATCAGAGTCCAGAGCATTATTCAAGAGTCCAGAGTCGTCAGAAGTTAGAGAGTCCAGAGTC
GTCAGAACCGATCCAAGAGATCATCAAGCCAACAGGCCGATCCAAGATATCATCAAGCCAACAAGCCAATCATCCAAGAAGATCAACAAGCCAACAAGCCGATCCAAGAG
ATCATCAAGCCAACAGGCTGATCCAAGAGATCATCAACCTAGCAAACTGATCATTCATAAACAGGTCATTGCAAACAAGATGCTGAGACGCATGACAGAATTTGCTCAAC
TTGAAATCGCCACTACAGAAAATCTGATGCTTGGCAAATTCACCTCTCCTTCTCAGCAACCAAACAAAACATCAAGTCTTAATGTGATGTCTTTTATGATGACTGATGCA
GGAATTAGTGAAGAACGAATGACTGAAGTTGAGAAGAAAATCAACATGTTACTGAAGATGGTTGAAGAGAAAGACCAAGAAATCGCCTCTCTCAAGAACCAGATGAAAAT
CAGACTGCCAGAGCCAACCAAGGTAGTTGGAAAGCAAAAGCGGAAAGAAAAATGGAGTCTTGGTGCCATGCGCTGA
Protein sequenceShow/hide protein sequence
MDLKWKPQISSVRKSPANLTKLNLSLNSTPANDESKAHKCFAGVVCGFIRRQWASEGSQVRSSKVGSFRYYSDSDSETHTQRSIQIESEKSESRALFKSPESSEVRESRV
VRTDPRDHQANRPIQDIIKPTSQSSKKINKPTSRSKRSSSQQADPRDHQPSKLIIHKQVIANKMLRRMTEFAQLEIATTENLMLGKFTSPSQQPNKTSSLNVMSFMMTDA
GISEERMTEVEKKINMLLKMVEEKDQEIASLKNQMKIRLPEPTKVVGKQKRKEKWSLGAMR