; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg021598 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg021598
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold9:7214297..7226762
RNA-Seq ExpressionSpg021598
SyntenySpg021598
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040194.1 gag/pol protein [Cucumis melo var. makuwa]7.0e-1555.29Show/hide
Query:  LVEIELPMPDTLPTSAESSRTSFSTWVELYIESVHIVNVLFSVQEGQRVS----------LEEDDVRWLHAIFRAKLAGGLGGGV
        +VEIELP+PDTLPTSAESS ++ STW+ELY ESVH+  + +   + +  S          +  DDV WLHAIFRAK AGG GGGV
Subjt:  LVEIELPMPDTLPTSAESSRTSFSTWVELYIESVHIVNVLFSVQEGQRVS----------LEEDDVRWLHAIFRAKLAGGLGGGV

KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]9.1e-1545.16Show/hide
Query:  FLWFFDHSG---VYKLNQKLYL-----------------VEIELPMPDTLPTSAESSRTSFSTWVELYIESVHIVNVLFSVQEGQR-----------VSL
        F+ F+D      V+K NQKLYL                 VEIELP+PDTLPTSAES  ++ STW+ELY ESVH+    +   +G               +
Subjt:  FLWFFDHSG---VYKLNQKLYL-----------------VEIELPMPDTLPTSAESSRTSFSTWVELYIESVHIVNVLFSVQEGQR-----------VSL

Query:  EEDDVRWLHAIFRAKLAGGLGGGV
          DDV WLHA+FRAK AGG GGGV
Subjt:  EEDDVRWLHAIFRAKLAGGLGGGV

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]3.1e-1554.55Show/hide
Query:  LVEIELPMPDTLPTSAESSRTSFSTWVELYIESVHI-------------VNVLFSVQEGQRVSLEEDDVRWLHAIFRAKLAGGLGGGV
        +VEIELP+PDTLPTSAESS ++ STW+ELY ESVH+             ++++FSV  G    +  DDV WLHA+FRAK  GG GGGV
Subjt:  LVEIELPMPDTLPTSAESSRTSFSTWVELYIESVHI-------------VNVLFSVQEGQRVSLEEDDVRWLHAIFRAKLAGGLGGGV

TYK25935.1 gag/pol protein [Cucumis melo var. makuwa]7.0e-1555.29Show/hide
Query:  LVEIELPMPDTLPTSAESSRTSFSTWVELYIESVHIVNVLFSVQEGQRVS----------LEEDDVRWLHAIFRAKLAGGLGGGV
        +VEIELP+PDTLPTSAESS ++ STW+ELY ESVH+  + +   + +  S          +  DDV WLHAIFRAK AGG GGGV
Subjt:  LVEIELPMPDTLPTSAESSRTSFSTWVELYIESVHIVNVLFSVQEGQRVS----------LEEDDVRWLHAIFRAKLAGGLGGGV

TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]3.1e-1554.55Show/hide
Query:  LVEIELPMPDTLPTSAESSRTSFSTWVELYIESVHI-------------VNVLFSVQEGQRVSLEEDDVRWLHAIFRAKLAGGLGGGV
        +VEIELP+PDTLPTSAESS ++ STW+ELY ESVH+             ++++FSV  G    +  DDV WLHA+FRAK  GG GGGV
Subjt:  LVEIELPMPDTLPTSAESSRTSFSTWVELYIESVHI-------------VNVLFSVQEGQRVSLEEDDVRWLHAIFRAKLAGGLGGGV

TrEMBL top hitse value%identityAlignment
A0A5A7T9P7 Gag/pol protein3.4e-1555.29Show/hide
Query:  LVEIELPMPDTLPTSAESSRTSFSTWVELYIESVHIVNVLFSVQEGQRVS----------LEEDDVRWLHAIFRAKLAGGLGGGV
        +VEIELP+PDTLPTSAESS ++ STW+ELY ESVH+  + +   + +  S          +  DDV WLHAIFRAK AGG GGGV
Subjt:  LVEIELPMPDTLPTSAESSRTSFSTWVELYIESVHIVNVLFSVQEGQRVS----------LEEDDVRWLHAIFRAKLAGGLGGGV

A0A5A7TKT0 Reverse transcriptase4.4e-1545.16Show/hide
Query:  FLWFFDHSG---VYKLNQKLYL-----------------VEIELPMPDTLPTSAESSRTSFSTWVELYIESVHIVNVLFSVQEGQR-----------VSL
        F+ F+D      V+K NQKLYL                 VEIELP+PDTLPTSAES  ++ STW+ELY ESVH+    +   +G               +
Subjt:  FLWFFDHSG---VYKLNQKLYL-----------------VEIELPMPDTLPTSAESSRTSFSTWVELYIESVHIVNVLFSVQEGQR-----------VSL

Query:  EEDDVRWLHAIFRAKLAGGLGGGV
          DDV WLHA+FRAK AGG GGGV
Subjt:  EEDDVRWLHAIFRAKLAGGLGGGV

A0A5A7V9N3 Reverse transcriptase1.5e-1554.55Show/hide
Query:  LVEIELPMPDTLPTSAESSRTSFSTWVELYIESVHI-------------VNVLFSVQEGQRVSLEEDDVRWLHAIFRAKLAGGLGGGV
        +VEIELP+PDTLPTSAESS ++ STW+ELY ESVH+             ++++FSV  G    +  DDV WLHA+FRAK  GG GGGV
Subjt:  LVEIELPMPDTLPTSAESSRTSFSTWVELYIESVHI-------------VNVLFSVQEGQRVSLEEDDVRWLHAIFRAKLAGGLGGGV

A0A5D3DR18 Gag/pol protein3.4e-1555.29Show/hide
Query:  LVEIELPMPDTLPTSAESSRTSFSTWVELYIESVHIVNVLFSVQEGQRVS----------LEEDDVRWLHAIFRAKLAGGLGGGV
        +VEIELP+PDTLPTSAESS ++ STW+ELY ESVH+  + +   + +  S          +  DDV WLHAIFRAK AGG GGGV
Subjt:  LVEIELPMPDTLPTSAESSRTSFSTWVELYIESVHIVNVLFSVQEGQRVS----------LEEDDVRWLHAIFRAKLAGGLGGGV

A0A5D3DSY7 Putative Retrotransposon protein1.5e-1554.55Show/hide
Query:  LVEIELPMPDTLPTSAESSRTSFSTWVELYIESVHI-------------VNVLFSVQEGQRVSLEEDDVRWLHAIFRAKLAGGLGGGV
        +VEIELP+PDTLPTSAESS ++ STW+ELY ESVH+             ++++FSV  G    +  DDV WLHA+FRAK  GG GGGV
Subjt:  LVEIELPMPDTLPTSAESSRTSFSTWVELYIESVHI-------------VNVLFSVQEGQRVSLEEDDVRWLHAIFRAKLAGGLGGGV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTTTGGAATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTCTCTGGTTTTTCGACCATTCTGGGGTGTACAAGTTGAATCAGAAGCT
CTATTTGGTAGAGATCGAGCTCCCGATGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTTTAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATA
TTGTAAATGTTTTGTTCAGCGTTCAGGAGGGTCAGCGGGTATCATTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCTGGGA
GGGGGCGTTGGGTCAGTTCTGATAGAACTAGCAGAGTACGGTCCAAGTGTTGTTGAGAGTGAGTCCAGTAGAGTGAGTCCAGTCAGGACTAGAATGGCTGATTGGGGAGA
CTTTTTTGGTGACTTTGGAGCCGTAAAACAGAGAGAAAAGGTTGCTGTGAATGCTGAAGCAAGTGGAGAAAAGTGGATTTCAAGGCTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTTTTGGAATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTCTCTGGTTTTTCGACCATTCTGGGGTGTACAAGTTGAATCAGAAGCT
CTATTTGGTAGAGATCGAGCTCCCGATGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTTTAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATA
TTGTAAATGTTTTGTTCAGCGTTCAGGAGGGTCAGCGGGTATCATTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCTGGGA
GGGGGCGTTGGGTCAGTTCTGATAGAACTAGCAGAGTACGGTCCAAGTGTTGTTGAGAGTGAGTCCAGTAGAGTGAGTCCAGTCAGGACTAGAATGGCTGATTGGGGAGA
CTTTTTTGGTGACTTTGGAGCCGTAAAACAGAGAGAAAAGGTTGCTGTGAATGCTGAAGCAAGTGGAGAAAAGTGGATTTCAAGGCTTTGA
Protein sequenceShow/hide protein sequence
MVFGMENRAQDFRAKQEDLWFLWFFDHSGVYKLNQKLYLVEIELPMPDTLPTSAESSRTSFSTWVELYIESVHIVNVLFSVQEGQRVSLEEDDVRWLHAIFRAKLAGGLG
GGVGSVLIELAEYGPSVVESESSRVSPVRTRMADWGDFFGDFGAVKQREKVAVNAEASGEKWISRL