; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg021601 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg021601
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Genome locationscaffold9:5935449..5939160
RNA-Seq ExpressionSpg021601
SyntenySpg021601
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041771.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.2e-3155.19Show/hide
Query:  IEEKDSQIEHLKKVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMAATKEESQCPTSTFTRPSAFQRLSVSTSKKSQPSTSVFDCLKVTNDQPKRKMNNL
        I E D+  +  +++DNS + +QRT VFDRIKP TTR SVFQR+SMA  KEE+QCPTST+ R SAF+RLS+STSKK +P TS FD LK+TNDQ +R+M  L
Subjt:  IEEKDSQIEHLKKVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMAATKEESQCPTSTFTRPSAFQRLSVSTSKKSQPSTSVFDCLKVTNDQPKRKMNNL

Query:  ELKLFDEVNCGEKLQSSIPSRMKRKFSVLINTEATSWMKKEDFIPPNLMSRSPQ
        + K F E N  +K+ S + SRMKRKFSV INTE +  +K    I  NL++   +
Subjt:  ELKLFDEVNCGEKLQSSIPSRMKRKFSVLINTEATSWMKKEDFIPPNLMSRSPQ

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.2e-3253.33Show/hide
Query:  MEERMVEMQEHINTLMKAIEEKDSQIEHLKKVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMAATKEESQCPTSTFTRPSAFQRLSVSTSKKSQPSTSV
        +E+   E+ E       +I + D+  +  ++VDNS + +QRTSVFDRIKP TTR SVFQR+SMA  +EE+QCPTST+ R SAF+RLS+STSKK +PSTS 
Subjt:  MEERMVEMQEHINTLMKAIEEKDSQIEHLKKVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMAATKEESQCPTSTFTRPSAFQRLSVSTSKKSQPSTSV

Query:  FDCLKVTNDQPKRKMNNLELKLFDEVNCGEKLQSSIPSRMKRKFSVLINTEATSWMKKEDFIPPN
        FD LK+TNDQ +R+M +L+ K F E N  +K+ S +PSRMKRK SV INTE +  +K    I  N
Subjt:  FDCLKVTNDQPKRKMNNLELKLFDEVNCGEKLQSSIPSRMKRKFSVLINTEATSWMKKEDFIPPN

KAA0055462.1 retrotransposon gag protein [Cucumis melo var. makuwa]9.4e-3252.73Show/hide
Query:  MEERMVEMQEHINTLMKAIEEKDSQIEHLKKVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMAATKEESQCPTSTFTRPSAFQRLSVSTSKKSQPSTSV
        +E+   E+ E       +I E D+  +  ++VDNS + +QRTSVFDRIKP TTR SVFQR+SMA  +E++QCPTST+ R SAF+RLS+STSKK +PSTS 
Subjt:  MEERMVEMQEHINTLMKAIEEKDSQIEHLKKVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMAATKEESQCPTSTFTRPSAFQRLSVSTSKKSQPSTSV

Query:  FDCLKVTNDQPKRKMNNLELKLFDEVNCGEKLQSSIPSRMKRKFSVLINTEATSWMKKEDFIPPN
        FD LK+TNDQ +R+M +L+ K F E N  +K+ + +PSRMKRK SV INTE +  +K    I  N
Subjt:  FDCLKVTNDQPKRKMNNLELKLFDEVNCGEKLQSSIPSRMKRKFSVLINTEATSWMKKEDFIPPN

KAA0063719.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.2e-3253.94Show/hide
Query:  MEERMVEMQEHINTLMKAIEEKDSQIEHLKKVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMAATKEESQCPTSTFTRPSAFQRLSVSTSKKSQPSTSV
        +E+   E+ E       +I E D+  +  K+VDNS + +QRTSVFDRIKP TTR SVFQR+SMA  +EE+QCPTST+ R S F+RLS+STSKK +PSTS 
Subjt:  MEERMVEMQEHINTLMKAIEEKDSQIEHLKKVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMAATKEESQCPTSTFTRPSAFQRLSVSTSKKSQPSTSV

Query:  FDCLKVTNDQPKRKMNNLELKLFDEVNCGEKLQSSIPSRMKRKFSVLINTEATSWMKKEDFIPPN
        FD LK+TNDQ +R+M  L+ K F E N  +K+ S +PSRMKRK SV INTE +  +K    I  N
Subjt:  FDCLKVTNDQPKRKMNNLELKLFDEVNCGEKLQSSIPSRMKRKFSVLINTEATSWMKKEDFIPPN

TYK08944.1 retrotransposon gag protein [Cucumis melo var. makuwa]9.4e-3252.73Show/hide
Query:  MEERMVEMQEHINTLMKAIEEKDSQIEHLKKVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMAATKEESQCPTSTFTRPSAFQRLSVSTSKKSQPSTSV
        +E+   E+ E       +I E D+  +  ++VDNS + +QRTSVFDRIKP TTR SVFQR+SMA  +E++QCPTST+ R SAF+RLS+STSKK +PSTS 
Subjt:  MEERMVEMQEHINTLMKAIEEKDSQIEHLKKVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMAATKEESQCPTSTFTRPSAFQRLSVSTSKKSQPSTSV

Query:  FDCLKVTNDQPKRKMNNLELKLFDEVNCGEKLQSSIPSRMKRKFSVLINTEATSWMKKEDFIPPN
        FD LK+TNDQ +R+M +L+ K F E N  +K+ + +PSRMKRK SV INTE +  +K    I  N
Subjt:  FDCLKVTNDQPKRKMNNLELKLFDEVNCGEKLQSSIPSRMKRKFSVLINTEATSWMKKEDFIPPN

TrEMBL top hitse value%identityAlignment
A0A5A7TJH2 Retrotransposon gag protein5.9e-3255.19Show/hide
Query:  IEEKDSQIEHLKKVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMAATKEESQCPTSTFTRPSAFQRLSVSTSKKSQPSTSVFDCLKVTNDQPKRKMNNL
        I E D+  +  +++DNS + +QRT VFDRIKP TTR SVFQR+SMA  KEE+QCPTST+ R SAF+RLS+STSKK +P TS FD LK+TNDQ +R+M  L
Subjt:  IEEKDSQIEHLKKVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMAATKEESQCPTSTFTRPSAFQRLSVSTSKKSQPSTSVFDCLKVTNDQPKRKMNNL

Query:  ELKLFDEVNCGEKLQSSIPSRMKRKFSVLINTEATSWMKKEDFIPPNLMSRSPQ
        + K F E N  +K+ S + SRMKRKFSV INTE +  +K    I  NL++   +
Subjt:  ELKLFDEVNCGEKLQSSIPSRMKRKFSVLINTEATSWMKKEDFIPPNLMSRSPQ

A0A5A7TQ06 Retrotransposon gag protein1.6e-3253.33Show/hide
Query:  MEERMVEMQEHINTLMKAIEEKDSQIEHLKKVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMAATKEESQCPTSTFTRPSAFQRLSVSTSKKSQPSTSV
        +E+   E+ E       +I + D+  +  ++VDNS + +QRTSVFDRIKP TTR SVFQR+SMA  +EE+QCPTST+ R SAF+RLS+STSKK +PSTS 
Subjt:  MEERMVEMQEHINTLMKAIEEKDSQIEHLKKVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMAATKEESQCPTSTFTRPSAFQRLSVSTSKKSQPSTSV

Query:  FDCLKVTNDQPKRKMNNLELKLFDEVNCGEKLQSSIPSRMKRKFSVLINTEATSWMKKEDFIPPN
        FD LK+TNDQ +R+M +L+ K F E N  +K+ S +PSRMKRK SV INTE +  +K    I  N
Subjt:  FDCLKVTNDQPKRKMNNLELKLFDEVNCGEKLQSSIPSRMKRKFSVLINTEATSWMKKEDFIPPN

A0A5A7UI09 Retrotransposon gag protein4.5e-3252.73Show/hide
Query:  MEERMVEMQEHINTLMKAIEEKDSQIEHLKKVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMAATKEESQCPTSTFTRPSAFQRLSVSTSKKSQPSTSV
        +E+   E+ E       +I E D+  +  ++VDNS + +QRTSVFDRIKP TTR SVFQR+SMA  +E++QCPTST+ R SAF+RLS+STSKK +PSTS 
Subjt:  MEERMVEMQEHINTLMKAIEEKDSQIEHLKKVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMAATKEESQCPTSTFTRPSAFQRLSVSTSKKSQPSTSV

Query:  FDCLKVTNDQPKRKMNNLELKLFDEVNCGEKLQSSIPSRMKRKFSVLINTEATSWMKKEDFIPPN
        FD LK+TNDQ +R+M +L+ K F E N  +K+ + +PSRMKRK SV INTE +  +K    I  N
Subjt:  FDCLKVTNDQPKRKMNNLELKLFDEVNCGEKLQSSIPSRMKRKFSVLINTEATSWMKKEDFIPPN

A0A5A7VDY3 Ty3-gypsy retrotransposon protein1.6e-3253.94Show/hide
Query:  MEERMVEMQEHINTLMKAIEEKDSQIEHLKKVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMAATKEESQCPTSTFTRPSAFQRLSVSTSKKSQPSTSV
        +E+   E+ E       +I E D+  +  K+VDNS + +QRTSVFDRIKP TTR SVFQR+SMA  +EE+QCPTST+ R S F+RLS+STSKK +PSTS 
Subjt:  MEERMVEMQEHINTLMKAIEEKDSQIEHLKKVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMAATKEESQCPTSTFTRPSAFQRLSVSTSKKSQPSTSV

Query:  FDCLKVTNDQPKRKMNNLELKLFDEVNCGEKLQSSIPSRMKRKFSVLINTEATSWMKKEDFIPPN
        FD LK+TNDQ +R+M  L+ K F E N  +K+ S +PSRMKRK SV INTE +  +K    I  N
Subjt:  FDCLKVTNDQPKRKMNNLELKLFDEVNCGEKLQSSIPSRMKRKFSVLINTEATSWMKKEDFIPPN

A0A5D3CCI8 Retrotransposon gag protein4.5e-3252.73Show/hide
Query:  MEERMVEMQEHINTLMKAIEEKDSQIEHLKKVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMAATKEESQCPTSTFTRPSAFQRLSVSTSKKSQPSTSV
        +E+   E+ E       +I E D+  +  ++VDNS + +QRTSVFDRIKP TTR SVFQR+SMA  +E++QCPTST+ R SAF+RLS+STSKK +PSTS 
Subjt:  MEERMVEMQEHINTLMKAIEEKDSQIEHLKKVDNSKKGEQRTSVFDRIKPSTTRPSVFQRMSMAATKEESQCPTSTFTRPSAFQRLSVSTSKKSQPSTSV

Query:  FDCLKVTNDQPKRKMNNLELKLFDEVNCGEKLQSSIPSRMKRKFSVLINTEATSWMKKEDFIPPN
        FD LK+TNDQ +R+M +L+ K F E N  +K+ + +PSRMKRK SV INTE +  +K    I  N
Subjt:  FDCLKVTNDQPKRKMNNLELKLFDEVNCGEKLQSSIPSRMKRKFSVLINTEATSWMKKEDFIPPN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTCTACTGCCCATTGTTGCTTCAATGAACTGACGTTGCAAGAAGATAAAGCTTCTATCGTTGCAGGTCAAGAAACAACCTTGCAGGGGGCATATACCAATGACAA
GTTTCTTGTTAAGTATAACCCTTTGTTTGAACTTGATTCTGACATAGTGACTGTCATGATGACTGAGACAAGAACTATGGAAGAAAGAATGGTTGAGATGCAGGAGCACA
TCAACACCTTAATGAAGGCGATTGAAGAAAAAGATTCTCAAATTGAACACCTAAAGAAAGTTGACAATTCCAAGAAGGGTGAACAAAGGACATCCGTCTTTGATCGCATC
AAGCCTTCAACTACTCGTCCTTCGGTATTCCAAAGAATGAGTATGGCCGCGACAAAAGAAGAAAGTCAATGTCCGACGTCCACCTTCACTCGACCTTCAGCTTTCCAAAG
GCTAAGTGTCTCCACATCGAAGAAAAGTCAGCCTTCAACATCTGTTTTTGATTGCCTCAAAGTAACGAACGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAAC
TTTTCGATGAAGTAAACTGCGGCGAAAAGCTTCAAAGTAGCATCCCGTCACGTATGAAGAGGAAGTTCTCTGTTCTCATAAATACAGAAGCTACGAGTTGGATGAAAAAA
GAAGACTTCATTCCTCCAAATTTGATGTCTCGCTCGCCTCAAGTCCGGTGTTCCACTCACCCTAAGTTCGCAGTTCCTTCCTCCAAGTTCGAAAGGTTCTCACGCGCTCC
GCTGCTGCAGTTCATTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGTTGCAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCATGCGGTTCGCTGCAGTTCCTTCTCCCCA
AGTTCGAAGGTTCTCACACGCTTCGCTGCAGTTCCTTCCTCAAAGTTCTCGAAGGTCTCACGCGAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCTCCCCAAAGTTCTCG
AAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCAAAGTTCGAAGCACACGCTTCGTTGCAGTTCCTTCTTTTCAATTTCGAAGGTTCTCACGCGTTTCGTTGCAGTT
CATTCTCTCAATTTCGAAGGTTCCCACGCGTTGCGCTGCAGTTCCTTCTCTCAAGTTTGAAGTTCCTTCTCTCAAGTTTGAAGGTTCTCATGTGTTTCGCTGTAGTTCCT
TCTCTCCAAGGTTCTCATGCACTGCGTTGCAGTTCCTTCTCCCCAAGTTCGAAGGTTTTCACACACTTCGATACAGTTCCTTCTCTCCAAGTTCGAAGGTTCTGACGTTG
CGCTGCTTCCTTCACCACGTTCGAAGGTTCTCACGCTACACTACTTCGCTGTTCCTTCTCCAAGTTCGAAGGTTCTCACGCTACGCTGCTTCCTTCTCCAAGTTTGAAGG
TTCTCATGCTACGCTAGAATGCGTTATTGTGCTACATTCTTCTTTAAGTTCGAAGGATCCCACATTGCGCTGTTGTGTTGCTTCCTTCACCAAGTTCGAAGGTTCTCACG
CTGCACTGCTTCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTCACGCTGCGCTGCTTCCTTCTCCAAGTTCGAAGGTCTTCATGCTACGCTCGGCTGCGCTGTTGCGCTAC
TTTCTAAAGTCCGAGGAACATGTCCTTGTACTCGTGCAGAGACGTGGCGGCGGCAAAAGTACAAGGAACATGTCCCTGTACTCATGCAGAAGGGCGTGGTGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTTCTACTGCCCATTGTTGCTTCAATGAACTGACGTTGCAAGAAGATAAAGCTTCTATCGTTGCAGGTCAAGAAACAACCTTGCAGGGGGCATATACCAATGACAA
GTTTCTTGTTAAGTATAACCCTTTGTTTGAACTTGATTCTGACATAGTGACTGTCATGATGACTGAGACAAGAACTATGGAAGAAAGAATGGTTGAGATGCAGGAGCACA
TCAACACCTTAATGAAGGCGATTGAAGAAAAAGATTCTCAAATTGAACACCTAAAGAAAGTTGACAATTCCAAGAAGGGTGAACAAAGGACATCCGTCTTTGATCGCATC
AAGCCTTCAACTACTCGTCCTTCGGTATTCCAAAGAATGAGTATGGCCGCGACAAAAGAAGAAAGTCAATGTCCGACGTCCACCTTCACTCGACCTTCAGCTTTCCAAAG
GCTAAGTGTCTCCACATCGAAGAAAAGTCAGCCTTCAACATCTGTTTTTGATTGCCTCAAAGTAACGAACGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAAC
TTTTCGATGAAGTAAACTGCGGCGAAAAGCTTCAAAGTAGCATCCCGTCACGTATGAAGAGGAAGTTCTCTGTTCTCATAAATACAGAAGCTACGAGTTGGATGAAAAAA
GAAGACTTCATTCCTCCAAATTTGATGTCTCGCTCGCCTCAAGTCCGGTGTTCCACTCACCCTAAGTTCGCAGTTCCTTCCTCCAAGTTCGAAAGGTTCTCACGCGCTCC
GCTGCTGCAGTTCATTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGTTGCAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCATGCGGTTCGCTGCAGTTCCTTCTCCCCA
AGTTCGAAGGTTCTCACACGCTTCGCTGCAGTTCCTTCCTCAAAGTTCTCGAAGGTCTCACGCGAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCTCCCCAAAGTTCTCG
AAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCAAAGTTCGAAGCACACGCTTCGTTGCAGTTCCTTCTTTTCAATTTCGAAGGTTCTCACGCGTTTCGTTGCAGTT
CATTCTCTCAATTTCGAAGGTTCCCACGCGTTGCGCTGCAGTTCCTTCTCTCAAGTTTGAAGTTCCTTCTCTCAAGTTTGAAGGTTCTCATGTGTTTCGCTGTAGTTCCT
TCTCTCCAAGGTTCTCATGCACTGCGTTGCAGTTCCTTCTCCCCAAGTTCGAAGGTTTTCACACACTTCGATACAGTTCCTTCTCTCCAAGTTCGAAGGTTCTGACGTTG
CGCTGCTTCCTTCACCACGTTCGAAGGTTCTCACGCTACACTACTTCGCTGTTCCTTCTCCAAGTTCGAAGGTTCTCACGCTACGCTGCTTCCTTCTCCAAGTTTGAAGG
TTCTCATGCTACGCTAGAATGCGTTATTGTGCTACATTCTTCTTTAAGTTCGAAGGATCCCACATTGCGCTGTTGTGTTGCTTCCTTCACCAAGTTCGAAGGTTCTCACG
CTGCACTGCTTCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTCACGCTGCGCTGCTTCCTTCTCCAAGTTCGAAGGTCTTCATGCTACGCTCGGCTGCGCTGTTGCGCTAC
TTTCTAAAGTCCGAGGAACATGTCCTTGTACTCGTGCAGAGACGTGGCGGCGGCAAAAGTACAAGGAACATGTCCCTGTACTCATGCAGAAGGGCGTGGTGGTGA
Protein sequenceShow/hide protein sequence
MGSTAHCCFNELTLQEDKASIVAGQETTLQGAYTNDKFLVKYNPLFELDSDIVTVMMTETRTMEERMVEMQEHINTLMKAIEEKDSQIEHLKKVDNSKKGEQRTSVFDRI
KPSTTRPSVFQRMSMAATKEESQCPTSTFTRPSAFQRLSVSTSKKSQPSTSVFDCLKVTNDQPKRKMNNLELKLFDEVNCGEKLQSSIPSRMKRKFSVLINTEATSWMKK
EDFIPPNLMSRSPQVRCSTHPKFAVPSSKFERFSRAPLLQFIPPSSKVLTRFVAVPSPQVRRFSCGSLQFLLPKFEGSHTLRCSSFLKVLEGLTRGSHALRCSSFSPKFS
KVLTRFAAVPSSKVRSTRFVAVPSFQFRRFSRVSLQFILSISKVPTRCAAVPSLKFEVPSLKFEGSHVFRCSSFSPRFSCTALQFLLPKFEGFHTLRYSSFSPSSKVLTL
RCFLHHVRRFSRYTTSLFLLQVRRFSRYAASFSKFEGSHATLECVIVLHSSLSSKDPTLRCCVASFTKFEGSHAALLRCSFSKFEGSHAALLPSPSSKVFMLRSAALLRY
FLKSEEHVLVLVQRRGGGKSTRNMSLYSCRRAWW